mRNA_E-fasciculatus_F_contig14564.3291.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14564.3291.1
Unique NamemRNA_E-fasciculatus_F_contig14564.3291.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Match: D8LMC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC3_ECTSI)

HSP 1 Score: 399 bits (1024), Expect = 1.240e-126
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 1 
Query:    1 PKAGNMNAAIFPNSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRRTGKKYEWADVGFVQTPQRFEDLGDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALRGMAADGKQMVDSVAKPDIVGHDCGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV 579
            PKAGNMNAAIFPNSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRRTGKKYEWADVGFVQTPQRFEDLGDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALRGMAADGKQ+VDSVAKPDIVGHDCGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV
Sbjct: 1114 PKAGNMNAAIFPNSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRRTGKKYEWADVGFVQTPQRFEDLGDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALRGMAADGKQVVDSVAKPDIVGHDCGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV 1306
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Match: D7FSC4_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC4_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 8.370e-66
Identity = 119/195 (61.03%), Postives = 144/195 (73.85%), Query Frame = 1 
Query:    1 PKAGNMNAAIFP-NSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRRTGKKYEWADVGFVQTPQRF-EDLGDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALRGMAADGKQMVDSVAKPDIVGHDCGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV 579
            PKAGNMNAA+FP + P   P+IG P+ +VVVNDARH+L+ EFLQRT PYFF +D  T ++Y+WA V FVQTPQRF +DL D DPLGNHA   + V N+ KDG+G V+S GQGSLWRV+AL+G + DGK  VD      +VG   GFRAE+LIEDTHTS+E F+Q WRS YV E GE LA C  QP  + WR+KQV
Sbjct:  384 PKAGNMNAAMFPIDDPTSPPLIG-PSTIVVVNDARHQLQPEFLQRTTPYFFDVDAIT-QQYKWAKVAFVQTPQRFRKDLPD-DPLGNHAASQYDVINIGKDGIGAVSSSGQGSLWRVEALKGRSPDGKTGVDP-KDLGLVGKKLGFRAEMLIEDTHTSIELFRQGWRSVYVNEPGEVLAWCTHQPTNLTWRIKQV 574
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BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Match: A0A835YSM9_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM9_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.150e-64
Identity = 112/195 (57.44%), Postives = 145/195 (74.36%), Query Frame = 1 
Query:    1 PKAGNMNAAIFP-NSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRRTGKKYEWADVGFVQTPQRFEDLGDGD-PLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALRGMAADGKQMVDSVAKPDIVGHDCGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV 579
            PKAGNMNAA+F  + P   P+IG+ + +VVVND RH+L+ EFLQRT+PYFF+LD   G++Y WA V FVQTPQRF+     D PLGNHA + + V N  KDG+G V+S GQGSLWRV AL+G+ ADG+Q  D+  +  ++GH  GFR+E+LIEDTHTS+E F+  W S YV E GE L++C  QPN++AWR+KQV
Sbjct:  387 PKAGNMNAALFALDYPDMPPLIGN-STIVVVNDCRHQLQPEFLQRTIPYFFELD-ADGQRYRWAKVAFVQTPQRFQTNQQADDPLGNHAAVQYDVINHGKDGIGAVSSSGQGSLWRVAALKGVDADGQQYADTQQRS-LIGHRLGFRSEMLIEDTHTSIEMFRAGWGSRYVNEPGEHLSMCTHQPNSIAWRIKQV 578
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Match: D7FSC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC3_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 9.810e-64
Identity = 115/199 (57.79%), Postives = 142/199 (71.36%), Query Frame = 1 
Query:    1 PKAGNMNAAIFP-NSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDR-----RTGKKYEWADVGFVQTPQRFEDLGDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALRGMAADGKQMVDSVAKPDIVGHDCGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV 579
            PKAGNMNAAIFP + P   P+ G+ + +VVVNDARH+L+  FLQRTVPYFF+L        +G +Y WA V FVQTPQRF      DPLGNHA+  + V N  KDG+G V+S GQGSLWRV+AL+G   DGK +VD   + D+VG   GFR+E+LIEDTHTS+E F+Q WRS YV E GE LA C  QP+++ WR+KQV
Sbjct:  591 PKAGNMNAAIFPVDDPTMTPLTGE-STIVVVNDARHQLEGNFLQRTVPYFFELAGGHPTVASGGRYRWAKVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWRVEALKGQRPDGK-IVDDPTELDLVGKKLGFRSEMLIEDTHTSIELFRQGWRSVYVNEPGEVLAWCTHQPSSLTWRIKQV 787
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BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Match: A0A836CP13_9STRA (Glyco_trans_2-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP13_9STRA)

HSP 1 Score: 221 bits (562), Expect = 2.290e-63
Identity = 113/195 (57.95%), Postives = 143/195 (73.33%), Query Frame = 1 
Query:    1 PKAGNMNAAIFP-NSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRRTGKKYEWADVGFVQTPQRF-EDLGDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALRGMAADGKQMVDSVAKPDIVGHDCGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV 579
            PKAGNMN+A+F  + P   P+IG  + +VVVND RH+L+ EFLQRTVPYFF+LD   G++Y WA V FVQTPQRF  ++   DPLGNHA + + V N  KDG+G V+S GQGSLWRV AL+G+ ADG    D V +  +VGH  GFR+E+LIEDTHTS+E F+  W S YV E GE L++C  QPN++AWR+KQV
Sbjct:  642 PKAGNMNSALFALDYPDMPPLIGS-STIVVVNDCRHQLQPEFLQRTVPYFFELD-ADGQRYRWAKVAFVQTPQRFTNNVQADDPLGNHAAVQYDVINHGKDGIGAVSSSGQGSLWRVAALKGVDADGNSYAD-VKERGLVGHRLGFRSEMLIEDTHTSIEMFRAGWSSRYVNEPGEHLSICTHQPNSIAWRIKQV 833
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Match: A0A835ZCE1_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE1_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.620e-61
Identity = 110/196 (56.12%), Postives = 140/196 (71.43%), Query Frame = 1 
Query:    1 PKAGNMNAAIFP-NSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRRTGKKYEWADVGFVQTPQRF--EDLGDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALRGMAADGKQMVDSVAKPDIVGHDCGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV 579
            PKAGN+NAAIF  + P ++P+IGD A +VVVND RH+L   FLQRTVPYFF+LD   G+ Y WA V FVQTPQRF  + +   DPLGNHA + + V N  KDG+G V+S G GSLWRV+ALRG   DG++  D     D +G   GFR+++LIEDTHTS++ F+  W S YV E GE L++C  QPN++AWR+KQV
Sbjct:  536 PKAGNLNAAIFAVDYPEDDPLIGD-ATIVVVNDCRHQLNPTFLQRTVPYFFELDAE-GQHYGWARVAFVQTPQRFKPDQMTLDDPLGNHAAVQYDVINRGKDGIGAVSSSGHGSLWRVEALRGADVDGRRYADPTVV-DNIGKTLGFRSQMLIEDTHTSIDMFRHGWTSRYVNEPGEHLSICTHQPNSIAWRIKQV 728
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Match: A0A835YHN4_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHN4_9STRA)

HSP 1 Score: 213 bits (541), Expect = 4.970e-61
Identity = 111/195 (56.92%), Postives = 139/195 (71.28%), Query Frame = 1 
Query:    1 PKAGNMNAAIFP-NSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRRTGKKYEWADVGFVQTPQRFEDLGD-GDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALRGMAADGKQMVDSVAKPDIVGHDCGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV 579
            PKAGNMNAAIFP + P + P+IGD + +VVV+D RH+L+ +FLQRTVPYFF+L  +    Y WA V FVQTPQRF    +  DPLGNHA + + V N  KDG+G V S G GSLWRV ALRG+ A+G+   D  +   +VGH  GFR+E+LIEDTHTSLE F+  WRS Y+ E  E L+VC  QP+ +AWR+KQV
Sbjct:  354 PKAGNMNAAIFPIDYPEQVPLIGD-STIVVVDDCRHQLQPDFLQRTVPYFFELH-KPSNTYTWAKVAFVQTPQRFPFQKEKDDPLGNHAAMQYDVINHGKDGIGAVGSSGHGSLWRVAALRGLDANGRCYADP-SNLRLVGHKLGFRSEMLIEDTHTSLEMFRAGWRSVYINEPNENLSVCTHQPDNIAWRIKQV 545
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Match: A0A835YVP7_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP7_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.440e-60
Identity = 104/200 (52.00%), Postives = 145/200 (72.50%), Query Frame = 1 
Query:    1 PKAGNMNAAIFP-NSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRR----TGKKYEWADVGFVQTPQRF-EDLG-DGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALRGMAADGKQMVDSVAKPDIVGHDCGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV 579
            PKAGNMN+A+FP + P +E ++GD + ++ VND RH+L+  FLQRTVPYFFKL +     +G +Y W  V FVQTPQRF +D+  + DPLGN+A + + + N  KDG+G V+S G GSLWRV+AL+G+AADG +  D   +  ++G + GFR+E+LIEDTHTS++ F+  W S YV E GE L+ C  QP+++AWR+KQV
Sbjct:  301 PKAGNMNSALFPIDYPDDESLVGD-STIIAVNDCRHQLQPNFLQRTVPYFFKLQQSANDGSGLEYTWDRVAFVQTPQRFPKDMNAEDDPLGNNAAVQYDIINHGKDGIGAVSSSGHGSLWRVEALKGLAADGTRYADPTNRA-LIGSEVGFRSEMLIEDTHTSIDMFRHGWTSRYVNEPGEHLSTCTHQPDSIAWRIKQV 498
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Match: D7FIF6_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF6_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 6.920e-58
Identity = 110/199 (55.28%), Postives = 131/199 (65.83%), Query Frame = 1 
Query:    1 PKAGNMNAAIFPNSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRRTGKKYEWADVGFVQTPQRFEDL---GDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALR-GMAADGKQMVDSVAKPDIVGHD--CGFRAEVLIEDTHTSLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV 579
            PKAGNMN AIF  +P EEP+IG+ A V+V+ND RH L  EFLQRTVPYFF  D +  + Y+WA++ F+QTPQRF D     D DPLGN A   F + N  +DG GG  SCGQGS+WRV  LR G+  DG + V      D VG     GFRAEVLIEDTHTS++ F+Q W+S YV    E LA C   P+TV WR KQV
Sbjct: 1595 PKAGNMNRAIFSFNPQEEPLIGEAA-VIVINDVRHELYPEFLQRTVPYFFTFD-KPRRCYKWANIAFIQTPQRFHDRTDWNDPDPLGNQAATQFDIVNSGRDGAGGALSCGQGSVWRVQVLRDGIRPDGTKFVKKGMPEDQVGQQGGLGFRAEVLIEDTHTSIDLFRQGWKSVYVNFPNERLACCTLPPDTVKWRWKQV 1791
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Match: A0A835YIK8_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK8_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.440e-57
Identity = 113/205 (55.12%), Postives = 134/205 (65.37%), Query Frame = 1 
Query:    1 PKAGNMNAAIF-PNSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRRTGKKYEWADVGFVQTPQRFEDL---GDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWRVDALR-GMAADGKQMVDSVA-KPDIVGHD--CGFRAEVLIEDTHTSLEFFKQQWRSAYVCEA----GETLAVCVEQPNTVAWRVKQV 579
            PKAGNMN AIF  +  GE  + G  A V+VVNDARH L+ EFLQR +PYFF  D R    Y WADV FVQTPQRF+D+    D DPLGN A   F + N  +DG  GV SCGQGSLWRV ALR G+  DG + +D+ A +  ++G     GFR+EVLIEDTHTSL+  +Q WRS YV       GE LA C   P++V WRVKQV
Sbjct:  276 PKAGNMNCAIFRKDGKGETLIAG--AAVIVVNDARHALQPEFLQRALPYFFTRDARRAGAYVWADVAFVQTPQRFDDVPQWADPDPLGNQAATQFDIVNPGRDGASGVLSCGQGSLWRVAALRDGIRPDGSKYIDTKADREGLIGRTGGLGFRSEVLIEDTHTSLDLLRQGWRSVYVVSPASSKGEVLARCTLPPDSVTWRVKQV 478
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14564.3291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LMC3_ECTSI1.240e-12699.48Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
D7FSC4_ECTSI8.370e-6661.03Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
A0A835YSM9_9STRA1.150e-6457.44Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
D7FSC3_ECTSI9.810e-6457.79Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
A0A836CP13_9STRA2.290e-6357.95Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A835ZCE1_9STRA1.620e-6156.12Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835YHN4_9STRA4.970e-6156.92Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835YVP7_9STRA2.440e-6052.00Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
D7FIF6_ECTSI6.920e-5855.28Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
A0A835YIK8_9STRA2.440e-5755.12Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14564contigE-fasciculatus_F_contig14564:263..1395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.9e-53
Seed eggNOG ortholog2880.D7FSC4
KEGG rclassRC00005
KEGG koko:K00694,ko:K10999,ko:K20924
KEGG TC4.D.3.1.2,4.D.3.1.4,4.D.3.1.5,4.D.3.1.6,4.D.3.1.7,4.D.3.1.9
KEGG ReactionR02889
KEGG Pathwayko00500,ko01100,ko02026,map00500,map01100,map02026
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005938,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009653,GO:0009987,GO:0010927,GO:0016020,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016759,GO:0016760,GO:0022607,GO:0030154,GO:0030243,GO:0030244,GO:0030435,GO:0030587,GO:0031150,GO:0031154,GO:0032502,GO:0032989,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0042244,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0045177,GO:0045179,GO:0045229,GO:0046527,GO:0048646,GO:0048856,GO:0048869,GO:0051273,GO:0051274,GO:0051703,GO:0051704,GO:0070590,GO:0070726,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0090702,GO:0099120,GO:0099568,GO:0099738,GO:1901576
EggNOG free text desc.Cellulose synthase
EggNOG OGs2QQSH@2759,COG1215@1
EC2.4.1.12
COG Functional cat.M
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size579
Cds size564
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14564.3291.1prot_E-fasciculatus_F_contig14564.3291.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14564 263..1380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927942.7717412-CDS-E-fasciculatus_F_contig14564:262..5721622927942.7717412-CDS-E-fasciculatus_F_contig14564:262..572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14564 263..572 -
1695995760.0576246-CDS-E-fasciculatus_F_contig14564:262..5721695995760.0576246-CDS-E-fasciculatus_F_contig14564:262..572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14564 263..572 -
1622927943.1531336-CDS-E-fasciculatus_F_contig14564:1126..13801622927943.1531336-CDS-E-fasciculatus_F_contig14564:1126..1380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14564 1127..1380 -
1695995760.0696442-CDS-E-fasciculatus_F_contig14564:1126..13801695995760.0696442-CDS-E-fasciculatus_F_contig14564:1126..1380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14564 1127..1380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927943.205073-UTR-E-fasciculatus_F_contig14564:1380..13951622927943.205073-UTR-E-fasciculatus_F_contig14564:1380..1395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14564 1381..1395 -
1695995760.078258-UTR-E-fasciculatus_F_contig14564:1380..13951695995760.078258-UTR-E-fasciculatus_F_contig14564:1380..1395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14564 1381..1395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14564.3291.1

>prot_E-fasciculatus_F_contig14564.3291.1 ID=prot_E-fasciculatus_F_contig14564.3291.1|Name=mRNA_E-fasciculatus_F_contig14564.3291.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=188bp
MNAAIFPNSPGEEPVIGDPARVVVVNDARHRLKTEFLQRTVPYFFKLDRR
TGKKYEWADVGFVQTPQRFEDLGDGDPLGNHAVLTFFVSNVSKDGVGGVT
SCGQGSLWRVDALRGMAADGKQMVDSVAKPDIVGHDCGFRAEVLIEDTHT
SLEFFKQQWRSAYVCEAGETLAVCVEQPNTVAWRVKQV
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mRNA from alignment at E-fasciculatus_F_contig14564:263..1395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14564.3291.1 ID=mRNA_E-fasciculatus_F_contig14564.3291.1|Name=mRNA_E-fasciculatus_F_contig14564.3291.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1133bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14564:263..1395- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCAAGGCCGGCAACATGAACGCCGCCATATTCCCCAACTCCCCCGGGGA
GGAGCCCGTCATCGGTGACCCCGCCCGCGTGGTGGTTGTCAACGACGCCC
GCCACCGCCTCAAGACGGAGTTCCTGCAGCGCACGGTGCCGTACTTCTTC
AAGCTCGACCGCCGCACGGGGAAGAAGTACGAGTGGGCGGACGTCGGGTT
CGTGCAGACGCCTCAGCGGTTCGAAGACCTCGGGGACGGAGACCCGCTCG
GGAACCACGCCGTGCTCACGTGAGAATTATTTGGAGAGATTGGGGGGGAG
GGCGGGTGGGGACAAAGATTGTGACAGGCAGACGGACAAGGACAGACCGA
GGTAATTGACGGGGGTCACATGAGAATTTGGAGAGGGGGGGAGGGGGGGC
GGGGATGAGAGACAGGGAGACCTACCGATCCCAAACGAGAAGAACAGACA
CACAGAACAAGTTCGTGTGTGTGTCTGTTCTTCTCGTTTGGGCTGGGTAC
ACCTCCCTGTCTCTCACCTCCCCTCCCCCCTCCCTCCCTCTCCAAATTCT
CACGTGGCCTCGTTCAATTTTCTCGGTCTGTCCTTGTTGGTTATGTGTTC
TCGTTCTCATGCCCCGGCGTAGCCCCCTCATATTGTACCGGTTTTCGTAT
TGATGCCACTCGCTGCCTTTTTTGAGTACCTCTCTTCACCCACCCGCTGC
CGATTCGTGTCCTGCAACACATGTAACACGCCCCCAGTCGCAAAACAATT
GCAGGTGTTCATCTCCCCTCCCCCCCCTCTTCCCCTACCCGTGGCCCAAA
CAAAACTCCACCACGCGTTGCAGGTTCTTCGTGTCCAACGTCAGCAAGGA
CGGTGTCGGAGGCGTGACCTCCTGCGGGCAGGGCAGCCTCTGGCGCGTGG
ATGCCCTCCGAGGCATGGCCGCGGACGGCAAGCAGATGGTGGACAGCGTG
GCCAAGCCCGACATCGTCGGACACGACTGCGGCTTCCGCGCGGAGGTGCT
GATCGAGGACACGCACACCTCCCTCGAGTTCTTCAAGCAGCAGTGGAGGT
CGGCGTACGTGTGCGAGGCCGGGGAGACGCTCGCGGTTTGCGTCGAGCAG
CCCAACACCGTGGCCTGGAGAGTCAAGCAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14564:263..1395-

>mRNA_E-fasciculatus_F_contig14564.3291.1 ID=mRNA_E-fasciculatus_F_contig14564.3291.1|Name=mRNA_E-fasciculatus_F_contig14564.3291.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1128bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14564:263..1395- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACGCCGCCATATTCCCCAACTCCCCCGGGGAGGAGCCCGTCATCGG
TGACCCCGCCCGCGTGGTGGTTGTCAACGACGCCCGCCACCGCCTCAAGA
CGGAGTTCCTGCAGCGCACGGTGCCGTACTTCTTCAAGCTCGACCGCCGC
ACGGGGAAGAAGTACGAGTGGGCGGACGTCGGGTTCGTGCAGACGCCTCA
GCGGTTCGAAGACCTCGGGGACGGAGACCCGCTCGGGAACCACGCCGTGC
TCACATGAACGCCGCCATATTCCCCAACTCCCCCGGGGAGGAGCCCGTCA
TCGGTGACCCCGCCCGCGTGGTGGTTGTCAACGACGCCCGCCACCGCCTC
AAGACGGAGTTCCTGCAGCGCACGGTGCCGTACTTCTTCAAGCTCGACCG
CCGCACGGGGAAGAAGTACGAGTGGGCGGACGTCGGGTTCGTGCAGACGC
CTCAGCGGTTCGAAGACCTCGGGGACGGAGACCCGCTCGGGAACCACGCC
GTGCTCACGTTCTTCGTGTCCAACGTCAGCAAGGACGGTGTCGGAGGCGT
GACCTCCTGCGGGCAGGGCAGCCTCTGGCGCGTGGATGCCCTCCGAGGCA
TGGCCGCGGACGGCAAGCAGATGGTGGACAGCGTGGCCAAGCCCGACATC
GTCGGACACGACTGCGGCTTCCGCGCGGAGGTGCTGATCGAGGACACGCA
CACCTCCCTCGAGTTCTTCAAGCAGCAGTGGAGGTCGGCGTACGTGTGCG
AGGCCGGGGAGACGCTCGCGGTTTGCGTCGAGCAGCCCAACACCGTGGCC
TGGAGAGTCAAGCAGGTAGTTCTTCGTGTCCAACGTCAGCAAGGACGGTG
TCGGAGGCGTGACCTCCTGCGGGCAGGGCAGCCTCTGGCGCGTGGATGCC
CTCCGAGGCATGGCCGCGGACGGCAAGCAGATGGTGGACAGCGTGGCCAA
GCCCGACATCGTCGGACACGACTGCGGCTTCCGCGCGGAGGTGCTGATCG
AGGACACGCACACCTCCCTCGAGTTCTTCAAGCAGCAGTGGAGGTCGGCG
TACGTGTGCGAGGCCGGGGAGACGCTCGCGGTTTGCGTCGAGCAGCCCAA
CACCGTGGCCTGGAGAGTCAAGCAGGTA
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