mRNA_E-fasciculatus_F_contig14554.3287.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14554.3287.1
Unique NamemRNA_E-fasciculatus_F_contig14554.3287.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14554.3287.1 vs. uniprot
Match: D7FHK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK7_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 2.140e-51
Identity = 99/114 (86.84%), Postives = 103/114 (90.35%), Query Frame = 1 
Query:   10 DGSAALGTVYMRSRSVLDEALPTTDQQQAALESSNEFDPHVDVLADGHPRRKGLVSRMRRTASNVIRHPFRSSSNNGGSNSASRPGAADLSGSGGAHITPFGSGDGGGGRQGHR 351
            DGSAALGTVY+RSRSVLDEALPTTDQQQAALE SN+FD HVDVLADGHPRRKGLVSRMRRTASNVIRHPFRSSS+N G    SRPGAADL+GSGGAH  PFGSGDGGG RQG R
Sbjct:  330 DGSAALGTVYVRSRSVLDEALPTTDQQQAALELSNDFDQHVDVLADGHPRRKGLVSRMRRTASNVIRHPFRSSSSNSGG--VSRPGAADLTGSGGAHNAPFGSGDGGG-RQGQR 440
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14554.3287.1 vs. uniprot
Match: A0A6H5JC72_9PHAE (GLOBIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC72_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 3.890e-48
Identity = 99/116 (85.34%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    7 RDGSAALGTVYMRSRSVLDEALPTTDQQQAALESSNEFDPHVDVLADGHPRRKGLVSRMRRTASNVIRHPFRSSSNNGGSNSASRPGAADLSGSGGAHITPFGSGDGGGGRQGHRG 354
            RDG+AALGTVYMRSRSVLDEALPTTDQQQAALE S +FD HVDVLADGHPRRKGLVSRMRRTASNVIRHPFRSSSN+GG    SRPGAADL+GSG  H  PFGSGDGGG RQG RG
Sbjct:  566 RDGTAALGTVYMRSRSVLDEALPTTDQQQAALELSTDFDQHVDVLADGHPRRKGLVSRMRRTASNVIRHPFRSSSNSGG---VSRPGAADLTGSG-THNAPFGSGDGGG-RQGQRG 676
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14554.3287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHK7_ECTSI2.140e-5186.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC72_9PHAE3.890e-4885.34GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14554contigE-fasciculatus_F_contig14554:1988..3265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927941.67947-CDS-E-fasciculatus_F_contig14554:1988..22321622927941.67947-CDS-E-fasciculatus_F_contig14554:1988..2232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14554 1989..2232 -
1695995759.90035-CDS-E-fasciculatus_F_contig14554:1988..22321695995759.90035-CDS-E-fasciculatus_F_contig14554:1988..2232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14554 1989..2232 -
1622927941.6929457-CDS-E-fasciculatus_F_contig14554:3155..32651622927941.6929457-CDS-E-fasciculatus_F_contig14554:3155..3265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14554 3156..3265 -
1695995759.9095352-CDS-E-fasciculatus_F_contig14554:3155..32651695995759.9095352-CDS-E-fasciculatus_F_contig14554:3155..3265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14554 3156..3265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14554.3287.1prot_E-fasciculatus_F_contig14554.3287.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14554 1989..3265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14554.3287.1

>prot_E-fasciculatus_F_contig14554.3287.1 ID=prot_E-fasciculatus_F_contig14554.3287.1|Name=mRNA_E-fasciculatus_F_contig14554.3287.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=118bp
RGRDGSAALGTVYMRSRSVLDEALPTTDQQQAALESSNEFDPHVDVLADG
HPRRKGLVSRMRRTASNVIRHPFRSSSNNGGSNSASRPGAADLSGSGGAH
ITPFGSGDGGGGRQGHRG
back to top

mRNA from alignment at E-fasciculatus_F_contig14554:1988..3265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14554.3287.1 ID=mRNA_E-fasciculatus_F_contig14554.3287.1|Name=mRNA_E-fasciculatus_F_contig14554.3287.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14554:1988..3265- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGGGAGAGACGGAAGCGCGGCCCTGGGAACGGTTTACATGAGGTCGCG
GTCGGTGCTGGACGAGGCGTTGCCAACGACGGACCAACAACAGGCTGCCT
TGGAATCAAGGTAAGCCAGCTGCTCGATTGCTGTAATTGCTCTTCTTTAT
TGTTTTTGCTAGTTTTTCCAGTCTATGGTCAGTACAAAAACCCGTGTAAA
AGCTGCTAGGGTTGTGCTCGGAAGGTGTTTTTTTTCTTGCGATTTAGATA
AATGTTTTCAGTGTAATATCCCAAATGGACAACAAAAATTCAAGGCCATC
GCCTACCGAGCACAAGCTGTGCTCCCGTGTGTCTCTTGGTTCTTGATGTG
GTGCTAGGGATTTGTCGCCTGGGGTGGCACAGCAGTAGTAGCTGTTGCCA
AAACTACACTAAGCATAAGGCATGTTTTTTTTTTTGTGTTCAGGTGTGTT
CAGGTGTGTTGTTGTTGTTGTTGCGGGGTCTCTTGTGCCTCTAGCGAGCC
TGCCAGTCAGACGGACAATCCCGCTTTGGGTGCCGTCCGTGGCTGTCGCG
CGTCGTGAAATGGTCCTGTGCGTTCGTTCAACGTCCTCATCCTCGAGCCA
CCCGATGAACTTTAATTTTCTCGCGGTCTCTCTCTCTCTCTCGTGTGTGT
CGGTGTGCTGTGGTCGTCTTTCGTGTTGTTGTTCTCATTGCGCGTAGGGG
TGCCGTGGGGCAGTTCTATAGTTGCCTAGTCGGCCATGCCGGGCCAGGCT
GCCATGTCTCTAGCGGTATGGCGCTCCAGCTGGATGAATGGCAGAATGGC
AGAATGGAAGATATCCTATTCCCCCTTTGGCCGGTGCCGAGCGACACATG
CAAAGAAGCGTGTGTCCTTGCCTCCGGTTGGTTGGTCGGATTCTTTTGTT
GGGTCTTACGGTGACCCTCCCCACGTGCGCTGAGCGACACCATGCGAAGT
AGCTTGTGTCCTCCCTGTTGCCCCTGATTGGTTGGTCGGATTCTTTGCTG
ACGACCGCCCTCTCTCCCCTCCTTGCACGCCAGCAATGAATTCGATCCGC
ACGTGGACGTGCTCGCCGACGGCCACCCCCGCCGCAAGGGCCTAGTCTCC
CGGATGCGCCGAACGGCGTCGAACGTCATCCGGCACCCCTTCCGAAGCAG
CAGCAACAACGGCGGCAGCAACAGCGCCTCCCGCCCGGGCGCCGCTGACC
TTTCCGGCAGCGGCGGCGCCCATATAACCCCCTTCGGCAGCGGCGACGGC
GGCGGCGGTAGGCAGGGGCATCGGGGAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14554:1988..3265-

>mRNA_E-fasciculatus_F_contig14554.3287.1 ID=mRNA_E-fasciculatus_F_contig14554.3287.1|Name=mRNA_E-fasciculatus_F_contig14554.3287.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14554:1988..3265- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGGGAGAGACGGAAGCGCGGCCCTGGGAACGGTTTACATGAGGTCGCG
GTCGGTGCTGGACGAGGCGTTGCCAACGACGGACCAACAACAGGCTGCCT
TGGAATCAAGAGAGGGAGAGACGGAAGCGCGGCCCTGGGAACGGTTTACA
TGAGGTCGCGGTCGGTGCTGGACGAGGCGTTGCCAACGACGGACCAACAA
CAGGCTGCCTTGGAATCAAGCAATGAATTCGATCCGCACGTGGACGTGCT
CGCCGACGGCCACCCCCGCCGCAAGGGCCTAGTCTCCCGGATGCGCCGAA
CGGCGTCGAACGTCATCCGGCACCCCTTCCGAAGCAGCAGCAACAACGGC
GGCAGCAACAGCGCCTCCCGCCCGGGCGCCGCTGACCTTTCCGGCAGCGG
CGGCGCCCATATAACCCCCTTCGGCAGCGGCGACGGCGGCGGCGGTAGGC
AGGGGCATCGGGGACAATGAATTCGATCCGCACGTGGACGTGCTCGCCGA
CGGCCACCCCCGCCGCAAGGGCCTAGTCTCCCGGATGCGCCGAACGGCGT
CGAACGTCATCCGGCACCCCTTCCGAAGCAGCAGCAACAACGGCGGCAGC
AACAGCGCCTCCCGCCCGGGCGCCGCTGACCTTTCCGGCAGCGGCGGCGC
CCATATAACCCCCTTCGGCAGCGGCGACGGCGGCGGCGGTAGGCAGGGGC
ATCGGGGA
back to top