mRNA_E-fasciculatus_F_contig14554.3286.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14554.3286.1
Unique NamemRNA_E-fasciculatus_F_contig14554.3286.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14554.3286.1 vs. uniprot
Match: A0A6H5JC72_9PHAE (GLOBIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC72_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.030e-19
Identity = 65/88 (73.86%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 AGDMGVVPALSISSASPGSVSTAVPTPSAATPASDRDQGSRGDRGNARTSGAAGAAAR---GGGFKDDVT--AAGDAGGGDSFCFSNE 249
            AGDM VVPALSISSASPGS STAVPTPSAATPASDRDQGSRGDRG ARTSGAA        G GFKDDV   AAG+      FCFSN+
Sbjct:  686 AGDMRVVPALSISSASPGSASTAVPTPSAATPASDRDQGSRGDRGIARTSGAAXXXXXXXGGRGFKDDVDVPAAGEGXXXXXFCFSNQ 773
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BLAST of mRNA_E-fasciculatus_F_contig14554.3286.1 vs. uniprot
Match: D7FHK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.140e-8
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:   10 MGVVPALSISSASPGSVSTAVPTPSAATPASDRDQ 114
            MGVVPALSISSASPGSVSTAVPTPSAATPASDRDQ
Sbjct:  455 MGVVPALSISSASPGSVSTAVPTPSAATPASDRDQ 489
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14554.3286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC72_9PHAE2.030e-1973.86GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FHK7_ECTSI2.140e-8100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14554contigE-fasciculatus_F_contig14554:693..1961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size355
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14554.3286.1prot_E-fasciculatus_F_contig14554.3286.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14554 693..1952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927941.3879485-CDS-E-fasciculatus_F_contig14554:692..9311622927941.3879485-CDS-E-fasciculatus_F_contig14554:692..931Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14554 693..931 -
1695995759.8655481-CDS-E-fasciculatus_F_contig14554:692..9311695995759.8655481-CDS-E-fasciculatus_F_contig14554:692..931Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14554 693..931 -
1622927941.3996406-CDS-E-fasciculatus_F_contig14554:1846..19521622927941.3996406-CDS-E-fasciculatus_F_contig14554:1846..1952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14554 1847..1952 -
1695995759.876266-CDS-E-fasciculatus_F_contig14554:1846..19521695995759.876266-CDS-E-fasciculatus_F_contig14554:1846..1952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14554 1847..1952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927941.412156-UTR-E-fasciculatus_F_contig14554:1952..19611622927941.412156-UTR-E-fasciculatus_F_contig14554:1952..1961Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14554 1953..1961 -
1695995759.8894644-UTR-E-fasciculatus_F_contig14554:1952..19611695995759.8894644-UTR-E-fasciculatus_F_contig14554:1952..1961Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14554 1953..1961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14554.3286.1

>prot_E-fasciculatus_F_contig14554.3286.1 ID=prot_E-fasciculatus_F_contig14554.3286.1|Name=mRNA_E-fasciculatus_F_contig14554.3286.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
MGVVPALSISSASPGSVSTAVPTPSAATPASDRDQGSRGDRGNARTSGAA
GAAARGGGFKDDVTAAGDAGGGDSFCFSNEDKKRESRQQSQQQQQQQRKQ
GRGTSGTAGQHGDSG
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mRNA from alignment at E-fasciculatus_F_contig14554:693..1961-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14554.3286.1 ID=mRNA_E-fasciculatus_F_contig14554.3286.1|Name=mRNA_E-fasciculatus_F_contig14554.3286.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1269bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14554:693..1961- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGGGGACATGGGGGTGGTGCCTGCCCTCAGCATTAGCAGCGCGTCGCC
GGGTTCGGTGTCGACGGCGGTACCGACGCCGTCTGCGGCGACTCCCGCCA
GCGATCGAGACCAAGGTTGGTGTTTTTTTTTGTCGTGTACGTTGCGTGTG
TGGTTTGGTGCACGCGGGGTGTGCGTGGAGACCAATGTTTGATTTTTTTT
CGTTGTCGTCGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGTTG
TTTCTTGCCAATAGCACAGCAAATCCATCTCTTCCACGGAAATAGAGTCC
GTGGCTATTTCTACGGTTCCCCGAGCAACATACAGCGATAGCTCCCCTCT
GGGCTAACAGGCTCTGTTTTCTTGCCGTTTTCCCGTGTATTTTGTATATT
GCGCGTGCGTGGGTTGTGGTACGGGGAGTGGGTGGGACAGACCGGCACGG
GCGTTGCACCGGTGACGTAGTGTCAAGAGACAGTAACCATCCCCGCTGCT
GTGCTATATTGTAGACCCTTTTCTGGCCTCTGCTTTGCTTCATTATATGT
ACTACCACAGAAGCTTATAATACATTGTTTGGCCAATTTGAACGCCCTTT
GATTTGCTCTCCGAGCCGAATGTCTTTTTTGTTTTTTTTTTCTCGCAAAG
ACACAAACGATTTCGTTTCCATGCACAGATACCGTAAGATAAGAGTTTTG
GGTTTACGTGAGCGATGAACTCATTGCGTTAACGGACACAAATTATTTAC
CTGTTTCGTTTGTGCGGCATTTGGTACGGTGTTGATACTCTTGCGTTTCT
CTTTCGCATGCATATCCAGACATGCTGGGGTTCTGTCTTTGCGAGAAGGA
GAGGATGCATGCAACTACAGCCGTCATGCTTGCGTTTCGTGTGTGCCCGT
CTTTCATGATTTTTGTCTTTTTCACACCCACCCCTTATCATGAACTTGGC
GCTTTTCGCTCTTCACGCGTGCAGACACTCACCCCCGTCCCATGAACTTG
GCGCGGCACCCCAAAACACATGCACAACAGGTAGCCGAGGCGACCGTGGC
AACGCCCGAACGTCGGGGGCGGCGGGGGCTGCGGCGAGAGGAGGAGGATT
CAAGGACGATGTTACGGCCGCGGGGGATGCTGGAGGGGGGGACTCGTTTT
GCTTCTCGAACGAAGACAAGAAGAGAGAAAGTCGACAACAGTCCCAGCAG
CAGCAGCAGCAGCAGCGCAAGCAAGGGCGTGGTACCAGCGGTACGGCAGG
ACAGCATGGGGACAGCGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14554:693..1961-

>mRNA_E-fasciculatus_F_contig14554.3286.1 ID=mRNA_E-fasciculatus_F_contig14554.3286.1|Name=mRNA_E-fasciculatus_F_contig14554.3286.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14554:693..1961- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGTGGTGCCTGCCCTCAGCATTAGCAGCGCGTCGCCGGGTTCGGT
GTCGACGGCGGTACCGACGCCGTCTGCGGCGACTCCCGCCAGCGATCGAG
ACCAAGATGGGGGTGGTGCCTGCCCTCAGCATTAGCAGCGCGTCGCCGGG
TTCGGTGTCGACGGCGGTACCGACGCCGTCTGCGGCGACTCCCGCCAGCG
ATCGAGACCAAGGTAGCCGAGGCGACCGTGGCAACGCCCGAACGTCGGGG
GCGGCGGGGGCTGCGGCGAGAGGAGGAGGATTCAAGGACGATGTTACGGC
CGCGGGGGATGCTGGAGGGGGGGACTCGTTTTGCTTCTCGAACGAAGACA
AGAAGAGAGAAAGTCGACAACAGTCCCAGCAGCAGCAGCAGCAGCAGCGC
AAGCAAGGGCGTGGTACCAGCGGTACGGCAGGACAGCATGGGGACAGCGG
TGTAGCCGAGGCGACCGTGGCAACGCCCGAACGTCGGGGGCGGCGGGGGC
TGCGGCGAGAGGAGGAGGATTCAAGGACGATGTTACGGCCGCGGGGGATG
CTGGAGGGGGGGACTCGTTTTGCTTCTCGAACGAAGACAAGAAGAGAGAA
AGTCGACAACAGTCCCAGCAGCAGCAGCAGCAGCAGCGCAAGCAAGGGCG
TGGTACCAGCGGTACGGCAGGACAGCATGGGGACAGCGGT
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