mRNA_E-fasciculatus_F_contig14548.3282.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14548.3282.1
Unique NamemRNA_E-fasciculatus_F_contig14548.3282.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14548.3282.1 vs. uniprot
Match: A0A6H5JHB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB0_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 2.860e-122
Identity = 201/278 (72.30%), Postives = 215/278 (77.34%), Query Frame = 3 
Query:    6 ELVLQQAGGVKNRDRESGARGAGAHDTSRMIVPSSPDPPASRESSPPGPSPSDCGAGWGSPPIFSSPWVSKGSGGEPPSGSSGGSAVDSDKGNNNERSPHPGGSRCLDAFTITLHQGYGGRGGHWYKSTLQLQCVCLALCSACRSFPSLHVHIDDQTPHSLWDTELCISSRVPTVLARRXXXXXXXXXXXXXXXXXXXLTWVYGRMSDFVLDAGDRRWKCLEVLRLERFKSRSRLSRPKPSLVIDQDESSFLSSTVWPPSLRQLEFGDGFSVRIATLK 839
            ELVLQ  G  +NRDRES AR     DTSRMI PSSPDPPASRE SPPGPSPSDCG  WGSPPI +S  VS GSGG+PP+GSSGG  +D++  N  +RSPHPGGSRCLDAF ITLHQ YGGR GHWYKSTLQLQCVCLALCSACRS P+ HV IDDQTPHSLWD  +  SSRVP VL  R                   LTWVYGRM+DFVLD GDR+WK LEVLRLERFKSRSR  RPKP LV DQ+ESSFLSST WPPSLRQLEFGDGF+VRIATLK
Sbjct:   38 ELVLQIPGNARNRDRESDARAMVTLDTSRMIAPSSPDPPASRERSPPGPSPSDCGGCWGSPPIGTSSLVSDGSGGKPPTGSSGGGVIDNESANTGKRSPHPGGSRCLDAFAITLHQAYGGRRGHWYKSTLQLQCVCLALCSACRSVPTWHVRIDDQTPHSLWDPNVRTSSRVPVVLGLR-------------------LTWVYGRMNDFVLDTGDRQWKFLEVLRLERFKSRSRPHRPKPRLVFDQEESSFLSSTAWPPSLRQLEFGDGFTVRIATLK 296
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BLAST of mRNA_E-fasciculatus_F_contig14548.3282.1 vs. uniprot
Match: A0A6H5JJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW8_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 2.530e-95
Identity = 180/278 (64.75%), Postives = 194/278 (69.78%), Query Frame = 3 
Query:   36 KNRDRESGARGAGAHDTSRMIVPSSPDPPASRESSPPGPSPSDCGAGWGSPPIFSSPWVSKGSGGEPPSGSSGGSAVDSDKGNNN---ERSPHPGGSRCLDAFTITLHQGYG-------GRGGHWYKSTLQLQCVCLALCSACRSFPSLHVHIDDQTPHSLWDTELCISSRVPTVLARRXXXXXXXXXXXXXXXXXXXLTWVYGRMSDFVLDAGDRRWKCLEVLRLERFKSRSRLSRPKPSLVIDQDESSFLSSTVWPPSLRQLEFGDGFSVRIATLK 839
            +NRDRE GARG    DTSR+I PSSPDPPASRE SPPGPS SDCG   GSPPI S   VS GSGG+PPSGSSGG  +D++ G+     ERSPH G    L A  + L            G GGHWYKSTLQLQCV LALCSACRS P+LHV ID Q PHSLWD  +  SSRVP VLA R                   LTWV GRM+DFVLD GDR+WK LEVLRLERFKSRSR  RPKP LV DQ+ESSFLSST WPPSLRQLEFGDGF+VRIATLK
Sbjct:   12 ENRDREGGARGMVTLDTSRVISPSSPDPPASRERSPPGPSLSDCGDCSGSPPICSFSLVSNGSGGKPPSGSSGGGVIDNENGDXXXXXERSPHAGN---LQAGVVVLTPSLSPCIKLTAGGGGHWYKSTLQLQCVSLALCSACRSVPTLHVRIDGQAPHSLWDPNVRTSSRVPVVLALR-------------------LTWVCGRMNDFVLDTGDRQWKVLEVLRLERFKSRSRPHRPKPRLVFDQEESSFLSSTAWPPSLRQLEFGDGFTVRIATLK 267
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14548.3282.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.660e-13
Identity = 45/88 (51.14%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:  315 SRCLDAFTITLHQGYGGRGGHWYKSTLQLQCVCLALCSACRSFPSLHVHIDDQTPHSLWDTE------------LCISSRVPTVLARR 542
            +RCLDAF I L Q   G    WY STL+LQ   L LC ACR+   LHVH+DDQTP SLW +             L ISSRVP V A R
Sbjct:    9 TRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALR 96
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14548.3282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHB0_9PHAE2.860e-12272.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJW8_9PHAE2.530e-9564.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LIJ3_9PHAE3.660e-1351.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14548contigE-fasciculatus_F_contig14548:869..3240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1564
Cds size1260
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14548.3282.1prot_E-fasciculatus_F_contig14548.3282.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14548 961..3028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927940.643546-UTR-E-fasciculatus_F_contig14548:868..9601622927940.643546-UTR-E-fasciculatus_F_contig14548:868..960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14548 869..960 +
1695995759.4740179-UTR-E-fasciculatus_F_contig14548:868..9601695995759.4740179-UTR-E-fasciculatus_F_contig14548:868..960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14548 869..960 +
1622927940.6792984-UTR-E-fasciculatus_F_contig14548:3028..32401622927940.6792984-UTR-E-fasciculatus_F_contig14548:3028..3240Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14548 3029..3240 +
1695995759.4995196-UTR-E-fasciculatus_F_contig14548:3028..32401695995759.4995196-UTR-E-fasciculatus_F_contig14548:3028..3240Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14548 3029..3240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927940.6536632-CDS-E-fasciculatus_F_contig14548:960..11771622927940.6536632-CDS-E-fasciculatus_F_contig14548:960..1177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14548 961..1177 +
1695995759.4835105-CDS-E-fasciculatus_F_contig14548:960..11771695995759.4835105-CDS-E-fasciculatus_F_contig14548:960..1177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14548 961..1177 +
1622927940.6650681-CDS-E-fasciculatus_F_contig14548:1985..30281622927940.6650681-CDS-E-fasciculatus_F_contig14548:1985..3028Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14548 1986..3028 +
1695995759.491596-CDS-E-fasciculatus_F_contig14548:1985..30281695995759.491596-CDS-E-fasciculatus_F_contig14548:1985..3028Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14548 1986..3028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14548.3282.1

>prot_E-fasciculatus_F_contig14548.3282.1 ID=prot_E-fasciculatus_F_contig14548.3282.1|Name=mRNA_E-fasciculatus_F_contig14548.3282.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=420bp
MIVPSSPDPPASRESSPPGPSPSDCGAGWGSPPIFSSPWVSKGSGGEPPS
GSSGGSAVDSDKGNNNERSPHPGGSRCLDAFTITLHQGYGGRGGHWYKST
LQLQCVCLALCSACRSFPSLHVHIDDQTPHSLWDTELCISSRVPTVLARR
LWDTELCISSRVPTVLARRLTWVYGRMSDFVLDAGDRRWKCLEVLRLERF
KSRSRLSRPKPSLVIDQDESSFLSSTVWPPSLRQLEFGDGFSVRIATLKW
PPSLQQLSIGHWCDEHISEVGWPMSLQQISFSGNFNQPIVEVMWPASLKQ
LSFGFEFNQPIAEVVWPASLQQLSFGDDFNQPIVDVVLPPSLQQLSFGDE
FNQPIVGVVWPASLQHLSFGNQFNQPITSVVWPSSLRHLSFGKRFSQCTD
GVAWPVSLQTVTCIGVSLL*
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mRNA from alignment at E-fasciculatus_F_contig14548:869..3240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14548.3282.1 ID=mRNA_E-fasciculatus_F_contig14548.3282.1|Name=mRNA_E-fasciculatus_F_contig14548.3282.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2372bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14548:869..3240+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGAGCTCGTCCTCCAACAGGCAGGGGGCGTGAAGAATAGAGACCGT
GAAAGTGGCGCTAGAGGCGCGGGAGCGCATGATACGTCCAGAATGATCGT
CCCATCCTCGCCAGACCCACCGGCTTCGAGGGAAAGTTCACCTCCTGGTC
CTTCGCCCAGCGATTGTGGGGCTGGCTGGGGCTCACCACCTATTTTCTCG
TCTCCATGGGTGTCGAAGGGTAGCGGTGGAGAGCCTCCCAGCGGCAGCAG
CGGAGGTAGTGCCGTCGACAGCGACAAAGGCAACAACAACGAGCGATCAC
CGCATCCAGGTATGTCCGAGTGGTGAAACAGCCCCGAGAACACGTTAGGA
GGCCTTTCCATTACCCCTCTTGGCACCCTGATATAGTGTTTATGCACGAT
CGACGTTATCCAGAGCCATGATCCTGGTGGTGAGGTATGCAGGAAGAGTT
CTGAGACCTTTCTGGCCACAAGACACGAGATAATCTTGGGGCGGCAATAA
GATATCCTCCTGATCGGGGGTCGTATTGCAGGTTTAACCTGTTTGCCAAC
GACGTCCTTTGTCACGCTCACGTGGCTGCGCGTTGTGACATAATATTGAG
GAAGCTCTTGTACGAAGGACCTGAGACACGTTAAGGTGCAGGGGAATGCA
AACTTTGTTCATACACCATTATTCTGGTGAACACTGATTATTCACAACGA
TGCTTGCGTTGTACAGCAACGGGAACGAGCCAACGAGGTGCGCCGCACCG
ACGTTCTGTTTGACCCGAGCATGGTGGAATTGCATTTGCGCAGATCCAAG
CTTTGTGCTTCTTCTCCAGCACCATATGCAAGACTGGCTAGCATTGTAGA
GTTTGGAACGTGAATTTGTCGTGCCGCGACATGGCTGCATGTTTGTCACC
TCAATGTCGCACTTCTTCGCTTGGCGTGGTAGTGCTGTTGCTTGCGCTTG
GGGGGCAACGTGAAATTACCTCTGACCTGAGCAAGCCTCATGTGTGCGTT
GTACGTAATTCGTGGTCGCGATTCTTAAATCTGGTGAATGACCCGTCGCC
TTTCACAGTTGTTATACTACTTCCGTCTTGTCCACGCTTTTCCGTGTGTT
TCGCCGGCAAATTTCAGGCGGGAGTCGGTGTCTTGACGCTTTCACCATCA
CCTTGCACCAAGGCTACGGCGGGAGGGGGGGGCACTGGTACAAGTCCACG
CTGCAGCTGCAATGTGTGTGCTTGGCGTTGTGCTCCGCGTGCCGAAGTTT
CCCGTCCTTGCACGTGCATATCGATGACCAGACGCCGCACAGCTTGTGGG
ATACAGAGTTGTGCATCTCGAGCCGTGTGCCGACCGTGCTAGCGCGCCGT
TTGTGGGATACAGAGTTGTGCATCTCGAGCCGTGTGCCGACCGTGCTAGC
GCGCCGTTTGACCTGGGTGTATGGTCGGATGAGTGATTTTGTTCTGGATG
CAGGCGATAGACGGTGGAAGTGTTTGGAGGTGCTGCGTCTGGAGAGATTC
AAAAGCAGATCGCGCCTATCTCGACCAAAGCCAAGCCTGGTGATAGACCA
AGACGAGTCTTCTTTTTTATCATCGACGGTATGGCCGCCTTCTCTGCGAC
AACTTGAGTTTGGGGATGGGTTCAGCGTACGGATCGCCACGCTCAAGTGG
CCTCCCTCCCTGCAACAGCTTTCGATTGGGCATTGGTGCGACGAGCATAT
TTCCGAGGTCGGTTGGCCGATGTCTTTGCAGCAGATATCATTCAGCGGAA
ACTTCAACCAGCCCATCGTGGAAGTAATGTGGCCAGCCTCCCTGAAACAG
CTATCGTTTGGTTTCGAATTCAACCAGCCCATTGCCGAAGTGGTGTGGCC
GGCTTCCCTGCAGCAGCTGTCGTTTGGAGATGATTTCAACCAGCCCATCG
TCGATGTTGTGTTGCCGCCCTCCCTGCAGCAGTTGTCGTTTGGAGATGAA
TTCAACCAGCCCATCGTCGGAGTCGTGTGGCCGGCCTCCTTGCAGCACCT
GTCGTTTGGAAACCAATTCAACCAGCCCATCACCAGTGTGGTGTGGCCAA
GCTCCTTGCGGCACCTTTCCTTTGGGAAACGGTTTTCCCAGTGTACAGAT
GGAGTCGCGTGGCCGGTCTCCCTTCAAACGGTGACGTGTATCGGAGTTTC
TCTGCTGTAGACTAATAGCGCAAGTATGTCTCGAGGGTGGGGTCCCTATT
TGTGAAGCACGTGGAGACAGGGAGGTTAGTGGTCAAGCGCATTGTTCCTG
ACCATGAGAAAAAACAAAAGGTTCGCCAAGCCACCGTTGCACCTCCCCAT
CTAGTGTTTATGGCGTGATTGAGTGCACCTGAGTACTGAAGGAATGCAAA
CCTTGGCGGGTGTAATTTTGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14548:869..3240+

>mRNA_E-fasciculatus_F_contig14548.3282.1 ID=mRNA_E-fasciculatus_F_contig14548.3282.1|Name=mRNA_E-fasciculatus_F_contig14548.3282.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2520bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14548:869..3240+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCGTCCCATCCTCGCCAGACCCACCGGCTTCGAGGGAAAGTTCACC
TCCTGGTCCTTCGCCCAGCGATTGTGGGGCTGGCTGGGGCTCACCACCTA
TTTTCTCGTCTCCATGGGTGTCGAAGGGTAGCGGTGGAGAGCCTCCCAGC
GGCAGCAGCGGAGGTAGTGCCGTCGACAGCGACAAAGGCAACAACAACGA
GCGATCACCGCATCCAGATGATCGTCCCATCCTCGCCAGACCCACCGGCT
TCGAGGGAAAGTTCACCTCCTGGTCCTTCGCCCAGCGATTGTGGGGCTGG
CTGGGGCTCACCACCTATTTTCTCGTCTCCATGGGTGTCGAAGGGTAGCG
GTGGAGAGCCTCCCAGCGGCAGCAGCGGAGGTAGTGCCGTCGACAGCGAC
AAAGGCAACAACAACGAGCGATCACCGCATCCAGGCGGGAGTCGGTGTCT
TGACGCTTTCACCATCACCTTGCACCAAGGCTACGGCGGGAGGGGGGGGC
ACTGGTACAAGTCCACGCTGCAGCTGCAATGTGTGTGCTTGGCGTTGTGC
TCCGCGTGCCGAAGTTTCCCGTCCTTGCACGTGCATATCGATGACCAGAC
GCCGCACAGCTTGTGGGATACAGAGTTGTGCATCTCGAGCCGTGTGCCGA
CCGTGCTAGCGCGCCGTTTGTGGGATACAGAGTTGTGCATCTCGAGCCGT
GTGCCGACCGTGCTAGCGCGCCGTTTGACCTGGGTGTATGGTCGGATGAG
TGATTTTGTTCTGGATGCAGGCGATAGACGGTGGAAGTGTTTGGAGGTGC
TGCGTCTGGAGAGATTCAAAAGCAGATCGCGCCTATCTCGACCAAAGCCA
AGCCTGGTGATAGACCAAGACGAGTCTTCTTTTTTATCATCGACGGTATG
GCCGCCTTCTCTGCGACAACTTGAGTTTGGGGATGGGTTCAGCGTACGGA
TCGCCACGCTCAAGTGGCCTCCCTCCCTGCAACAGCTTTCGATTGGGCAT
TGGTGCGACGAGCATATTTCCGAGGTCGGTTGGCCGATGTCTTTGCAGCA
GATATCATTCAGCGGAAACTTCAACCAGCCCATCGTGGAAGTAATGTGGC
CAGCCTCCCTGAAACAGCTATCGTTTGGTTTCGAATTCAACCAGCCCATT
GCCGAAGTGGTGTGGCCGGCTTCCCTGCAGCAGCTGTCGTTTGGAGATGA
TTTCAACCAGCCCATCGTCGATGTTGTGTTGCCGCCCTCCCTGCAGCAGT
TGTCGTTTGGAGATGAATTCAACCAGCCCATCGTCGGAGTCGTGTGGCCG
GCCTCCTTGCAGCACCTGTCGTTTGGAAACCAATTCAACCAGCCCATCAC
CAGTGTGGTGTGGCCAAGCTCCTTGCGGCACCTTTCCTTTGGGAAACGGT
TTTCCCAGTGTACAGATGGAGTCGCGTGGCCGGTCTCCCTTCAAACGGTG
ACGTGTATCGGAGTTTCTCTGCTGTAGGCGGGAGTCGGTGTCTTGACGCT
TTCACCATCACCTTGCACCAAGGCTACGGCGGGAGGGGGGGGCACTGGTA
CAAGTCCACGCTGCAGCTGCAATGTGTGTGCTTGGCGTTGTGCTCCGCGT
GCCGAAGTTTCCCGTCCTTGCACGTGCATATCGATGACCAGACGCCGCAC
AGCTTGTGGGATACAGAGTTGTGCATCTCGAGCCGTGTGCCGACCGTGCT
AGCGCGCCGTTTGTGGGATACAGAGTTGTGCATCTCGAGCCGTGTGCCGA
CCGTGCTAGCGCGCCGTTTGACCTGGGTGTATGGTCGGATGAGTGATTTT
GTTCTGGATGCAGGCGATAGACGGTGGAAGTGTTTGGAGGTGCTGCGTCT
GGAGAGATTCAAAAGCAGATCGCGCCTATCTCGACCAAAGCCAAGCCTGG
TGATAGACCAAGACGAGTCTTCTTTTTTATCATCGACGGTATGGCCGCCT
TCTCTGCGACAACTTGAGTTTGGGGATGGGTTCAGCGTACGGATCGCCAC
GCTCAAGTGGCCTCCCTCCCTGCAACAGCTTTCGATTGGGCATTGGTGCG
ACGAGCATATTTCCGAGGTCGGTTGGCCGATGTCTTTGCAGCAGATATCA
TTCAGCGGAAACTTCAACCAGCCCATCGTGGAAGTAATGTGGCCAGCCTC
CCTGAAACAGCTATCGTTTGGTTTCGAATTCAACCAGCCCATTGCCGAAG
TGGTGTGGCCGGCTTCCCTGCAGCAGCTGTCGTTTGGAGATGATTTCAAC
CAGCCCATCGTCGATGTTGTGTTGCCGCCCTCCCTGCAGCAGTTGTCGTT
TGGAGATGAATTCAACCAGCCCATCGTCGGAGTCGTGTGGCCGGCCTCCT
TGCAGCACCTGTCGTTTGGAAACCAATTCAACCAGCCCATCACCAGTGTG
GTGTGGCCAAGCTCCTTGCGGCACCTTTCCTTTGGGAAACGGTTTTCCCA
GTGTACAGATGGAGTCGCGTGGCCGGTCTCCCTTCAAACGGTGACGTGTA
TCGGAGTTTCTCTGCTGTAG
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