mRNA_E-fasciculatus_F_contig14545.3280.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14545.3280.1 vs. uniprot
Match: A0A6H5K0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H2_9PHAE) HSP 1 Score: 456 bits (1173), Expect = 1.010e-154 Identity = 314/385 (81.56%), Postives = 329/385 (85.45%), Query Frame = 1
Query: 7 FFSVFQGAVYGILAAKLTGQPEDESYSFRTYAILLPWVAVTCFFRNSSQFSYAALVAAFTAVVIFTSSNTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLVPTRAKNLVLEQIHLSLDAAFREVSINGERMFGPVVCPRDSRAQFLRALHRSKSTSVPCGGPGSAXXXXXXXXXXXXRPHPSRGGEGSPREAGKRHXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXX----VPAESWGRLPAVAELLLLPGFSTEKPGFLDAGDSGRLLDPGPMVASERRRGSPPGKPAAGSSPAESAGPARSPQGGGDAPVRDEGGGVVHVPSEVAGGGRDGSGAEEGKGFRPEGQAAATAA--VVATSWGGREKEAG 1143
FFSV QGAVYGILAAKL GQP ESY+ RTYAILLPWVAVTCFFRNSSQFSYAALVAAFTAVVIFTSS+TVLGANGEAVSLARIVNTVVGSVVYLLVDMLLVPTRAKNL+LEQI+LSLDAAFRE+SINGERMFGPVVCPR SRAQFLRALHRS+S VP GGPG+A PH SRGGEGSPREAGK+HXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX VPAESWGR PAVAELLLLPGFSTEKPGFLD G SGRLLDP P+V+SE P GKPAAGS PAESAGPA SP GG D P RDEGGG++ VPS +AGG RDGSGAEEG+ FR EG+ AA A V TSWGGREKEAG
Sbjct: 13 FFSVLQGAVYGILAAKLAGQPGVESYNLRTYAILLPWVAVTCFFRNSSQFSYAALVAAFTAVVIFTSSSTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLVPTRAKNLLLEQIYLSLDAAFRELSINGERMFGPVVCPRHSRAQFLRALHRSQSICVPSGGPGAAAA-----------PHASRGGEGSPREAGKKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPAESWGRPPAVAELLLLPGFSTEKPGFLDGGGSGRLLDPRPIVSSEHGHDLPLGKPAAGSPPAESAGPAGSPAGGEDGPDRDEGGGILDVPSGLAGGRRDGSGAEEGEDFRLEGEVAAAAEKIVSVTSWGGREKEAG 386
BLAST of mRNA_E-fasciculatus_F_contig14545.3280.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI) HSP 1 Score: 273 bits (698), Expect = 6.820e-79 Identity = 193/376 (51.33%), Postives = 205/376 (54.52%), Query Frame = 1
Query: 25 GAVYGILAAKLTGQPEDESYSFRTYAILLPWVAVTCFFRNSSQFSYAALVAAFTAVVIFTSSNTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLVPTRAKNLVLEQIHLSLDAAFREVSINGERMFGPVVCPRDSRAQFLRALHRSKSTSVPCGGPGSAXXXXXXXXXXXXRPHPSRGGEGSPREAGKRHXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXVPAESWGRLPAVAELLLLPGFSTEKPGFLDAGDSGRLLDPGPMVASERRRGSPPGKPAAGSSPAESAGPARSPQGGGDAPVRDEGGGVVHVP--SEVAGGGRDGSGAEEGKGFRPEGQAAATAAVVAT-SWGGREKEAG 1143
GAVYGILAAKL GQPEDESYSF+TYAILLPWVAVTCFFRNSSQFSYAALVAAFTAVVIFTSSNTVLGANGEAVSLARIVNTVVGSVVYLLVDMLL PTRAKNLVLEQI+LSLDAAFRE PGFLD G SGR LDP P+V+ E+ R SPPGKPAAGS PAESAGPA SP GG D P+RDEG +V VP S +AG +GSGAEEG+G R EG+AAATAAVV+T SWGGREKE G
Sbjct: 781 GAVYGILAAKLAGQPEDESYSFQTYAILLPWVAVTCFFRNSSQFSYAALVAAFTAVVIFTSSNTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLAPTRAKNLVLEQIYLSLDAAFRE------------------------------------------------------------------------------------------------------------------------------------------------PGFLDGGGSGRPLDPTPIVSGEQGRDSPPGKPAAGSPPAESAGPAGSPAGGEDGPLRDEGRRIVDVPRGSGLAGVRWEGSGAEEGEGSRLEGEAAATAAVVSTTSWGGREKEPG 1012
BLAST of mRNA_E-fasciculatus_F_contig14545.3280.1 vs. uniprot
Match: A0A836CDY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY4_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.710e-10 Identity = 53/157 (33.76%), Postives = 80/157 (50.96%), Query Frame = 1
Query: 25 GAVYG--ILAAKLTGQPEDESYSFRTYAIL--LPWVAVTCFFRNSSQFSYAALVAAFTAVVIFTSSNTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLVPTRAKNLVLEQIHLSLDAAFREVSINGERMFGPVVCPRDSRAQFLRALHRSKSTSVP 483
GA+YG + L D + R A+L PWVA+ CFFR+S +YAA+VAAFTAVVI + + +G A +LARI NT+ G ++Y+ +D + P RAK ++ + +L EV + + G + C + A A + P
Sbjct: 774 GAMYGWVLTDIALRNSTGDHPEALRWCAVLGLPPWVALCCFFRHSRTHAYAAVVAAFTAVVIMIGTFSAKDHSGYA-ALARIQNTIFGLIIYMALDNCIAPVRAKIVLKTHVTHALGTMKNEVEAVEDSLAGSLTCVDTAEAHARAASVDDAAADAP 929
BLAST of mRNA_E-fasciculatus_F_contig14545.3280.1 vs. uniprot
Match: A0A836CQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ15_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 7.900e-5 Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 1
Query: 25 GAVYGILAAKLTGQPEDESYSFRTYAILLPWVAVTCFFRNSSQFSYAALVAAFTAVVIFTSSNTVLGANGEAVSLARIVNTVVGSVVYLL-----------VDMLLVPTRAKNLVLEQIHLSLDAAFREVSINGERMFGPV 414
GA+YG +L D + L PWVA FF+NS YAA+V+AFTAV+I + A G L RI NT++G V+Y+ VD L+ P RAK L+ ++ +L V+ ++ G V
Sbjct: 723 GAMYGWFLTELVNN--DAARKLAAIG-LPPWVAFCAFFKNSKSHGYAAIVSAFTAVIIVLGTFNA-SAVGSVAPLTRIQNTILGLVIYMAXXXXXXXXXXAVDNLVFPVRAKVLLRGELAEALGLMRDAVNCLDAQLLGQV 859 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14545.3280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14545.3280.1 >prot_E-fasciculatus_F_contig14545.3280.1 ID=prot_E-fasciculatus_F_contig14545.3280.1|Name=mRNA_E-fasciculatus_F_contig14545.3280.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=381bp MFFFSVFQGAVYGILAAKLTGQPEDESYSFRTYAILLPWVAVTCFFRNSSback to top mRNA from alignment at E-fasciculatus_F_contig14545:18..2518- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14545.3280.1 ID=mRNA_E-fasciculatus_F_contig14545.3280.1|Name=mRNA_E-fasciculatus_F_contig14545.3280.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2501bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14545:18..2518- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14545:18..2518- >mRNA_E-fasciculatus_F_contig14545.3280.1 ID=mRNA_E-fasciculatus_F_contig14545.3280.1|Name=mRNA_E-fasciculatus_F_contig14545.3280.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2286bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14545:18..2518- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |