mRNA_E-fasciculatus_F_contig14543.3279.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Match: D8LLI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI1_ECTSI) HSP 1 Score: 251 bits (641), Expect = 5.110e-82 Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 1
Query: 1 YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSIIGGSGLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDGETE 378
YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKS+IGGS LSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDGET+
Sbjct: 101 YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLIGGSSLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDGETD 226
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Match: A0A835Z8Y2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y2_9STRA) HSP 1 Score: 120 bits (301), Expect = 7.680e-31 Identity = 64/127 (50.39%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 1 YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSIIGGSGLSS--KDTMEGVLKKALSQKGENQFQSFKLKSVKDGET 375
Y LP V P G LLE YG+D NR+ +LVTWNYP GWI QRP+ DTN E GTV+TGDY +GDSA L V P ++GG LS+ K +E ++ ++++QKG NQ Q+FKLK V +G T
Sbjct: 93 YGLPGVGKPPDGMKALLEIYGRD---------QNRETLLVTWNYPNGWITQRPSLDTNSEDGTVATGDYQKGDSAFLVVQPLDVLGGEKLSATNKALVEKLVLQSITQKGANQIQNFKLKKVTEGAT 210
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Match: W7TXP4_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXP4_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.510e-22 Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 1
Query: 1 YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSIIGGSGLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDG 369
Y LPP++DVPGGF+ L+E YGK K R+ +LV + YP W+V +P+ D N E GT+S GDY +GDSA +V G S D V+K+A+ QK +N +Q+FK+ + G
Sbjct: 124 YGLPPILDVPGGFSPLVEVYGKAAGAKKE-----RETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPG 241
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Match: A0A4D9DCV0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCV0_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.200e-22 Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 1
Query: 1 YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSIIGGSGLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDG 369
Y LPP++DVPGGF+ L+E YGK K R+ +LV + YP W+V +P+ D N E GT+S GDY +GDSA +V G S D V+ +A+ QK +N +Q+FK+ + G
Sbjct: 33 YGLPPILDVPGGFSPLVEVYGKAAGAKKE-----RETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVTRAIGQKSQNVYQNFKVLKKRPG 150
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Match: A0A7S1Z0S7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z0S7_TRICV) HSP 1 Score: 92.4 bits (228), Expect = 1.970e-20 Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 1 YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPK-SIIGGSGLSSKDTMEGVLKKALSQKGENQFQSFKLKSV 360
Y LP + +P GF+ LLE YGK +NR P+LV + +P W+V PN D N E GT+ G+YG+GD+A LFV + + G K E VL+KA+SQKG + +Q+FK+ +V
Sbjct: 89 YGLPLMKSIPDGFSPLLEIYGK---------GANRSPLLVNFAHPLDWVVTLPNLDVNGEDGTIQAGEYGKGDTATLFVYNEPGKVSDIGEKPKAFFEDVLQKAISQKGSSIYQNFKVTAV 200
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Match: A0A7S2RLR6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLR6_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.640e-20 Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query: 1 YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSIIGGSGLSSKDTMEGVLKKALSQKGENQFQSFKLKSV 360
Y + P GF+ ++ YG+ +DP+LVT+N P GW+V RPN D N E GTVS+GDYG+GDSA LF+ P G K+ E ++ ++QKGE+ Q FKL+ +
Sbjct: 88 YGIKDYKQAPDGFSPVVGFYGR--------AVPGQDPLLVTYNSPSGWLVVRPNIDNNGEDGTVSSGDYGKGDSAALFIGPPLKGGSLADQPKEYFEKLVFAGVTQKGESMVQGFKLRKI 199
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Match: F0YP05_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP05_AURAN) HSP 1 Score: 89.7 bits (221), Expect = 2.370e-19 Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 7 LPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSIIGGSGLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDG 369
LPPV +P GF+ +L +D +L +V +N+P W+V +P+ +TN E+GTVS GDYG+GDSA L+V+ G +K ++ K L+QKG+NQFQ+F++++V G
Sbjct: 70 LPPVAGIPDGFSPVLSSVNQDQSL------------IVQFNHPNAWLVVKPSVNTNGESGTVSAGDYGKGDSAALYVSDLPPGGDKAFYAK-----LIAKGLAQKGDNQFQNFRVRAVSPG 173
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Match: A0A7S2LS91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LS91_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.830e-18 Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 1
Query: 1 YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSIIGGSGLSSKDTMEGVLKKALSQKGENQFQSFKLKSV 360
Y LPP+ VP GF+ LLE +GK NR P+LV + +P W+V P+ D N E GT+ G Y GD+A L+V + + K + + KA+SQKG+N +Q FK+ ++
Sbjct: 31 YGLPPLKSVPDGFSPLLELWGK---------GKNRSPLLVQFAHPSDWVVTLPSQDVNGEDGTIQAGQYSAGDTATLYVIENTKVENISEQPKTFFKDSIIKAISQKGDNIYQDFKVTNL 141
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Match: A0A1E7EM36_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EM36_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.920e-18 Identity = 50/118 (42.37%), Postives = 65/118 (55.08%), Query Frame = 1
Query: 1 YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFV-APKSIIGGSGLSSKDTMEGVLKKALSQKGENQFQSFKL 351
Y LP +V++P G LLE YGK NR P+LV N+P W+VQ P+ D N E GTV G+Y +GD+A F+ P+ I K E VL A+SQKG N +Q FK+
Sbjct: 94 YGLPSIVNIPSGMKPLLEVYGK---------GKNRFPLLVLMNHPLTWVVQLPSNDVNGEDGTVQAGEYAKGDTATFFLYEPEGHIDNIYDVDKKLYEKVLIAAISQKGGNMYQDFKV 202
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Match: A0A7S3P7Q3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7Q3_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 6.020e-18 Identity = 47/117 (40.17%), Postives = 68/117 (58.12%), Query Frame = 1
Query: 1 YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSIIGGSGLSSKDTMEGVLKKALSQKGENQFQSFKL 351
Y LP V V GF +LE YGK NR PILVT+N+P W++ P+ D N E GT+ GDY +GD++ +V + LS K+ ++ VL K +SQKG+N +++FK+
Sbjct: 69 YGLPQVSKVADGFTPILEVYGK---------GKNRFPILVTFNHPLSWVITLPSNDVNGEDGTIQVGDYAKGDTSTFYVYDEKGHVDLPLS-KEVVDTVLIKCISQKGDNMYENFKV 175 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14543.3279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14543.3279.1 >prot_E-fasciculatus_F_contig14543.3279.1 ID=prot_E-fasciculatus_F_contig14543.3279.1|Name=mRNA_E-fasciculatus_F_contig14543.3279.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp YNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVback to top mRNA from alignment at E-fasciculatus_F_contig14543:272..3045+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14543.3279.1 ID=mRNA_E-fasciculatus_F_contig14543.3279.1|Name=mRNA_E-fasciculatus_F_contig14543.3279.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2774bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14543:272..3045+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14543:272..3045+ >mRNA_E-fasciculatus_F_contig14543.3279.1 ID=mRNA_E-fasciculatus_F_contig14543.3279.1|Name=mRNA_E-fasciculatus_F_contig14543.3279.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14543:272..3045+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |