mRNA_E-fasciculatus_F_contig14528.3271.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14528.3271.1
Unique NamemRNA_E-fasciculatus_F_contig14528.3271.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14528.3271.1 vs. uniprot
Match: D8LHM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM8_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 6.180e-24
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:  145 MESPVRSVETGENGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETSPSQRFEAKSYLERQVEELSCADEDEAQEKVSQRLQLKQDQAQKKR 429
            MESPVRSVETGENGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ETSPSQRFEAKSYLERQVEELSCADEDEAQEKVSQRLQLKQDQAQKKR
Sbjct:    1 MESPVRSVETGENGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ETSPSQRFEAKSYLERQVEELSCADEDEAQEKVSQRLQLKQDQAQKKR 93
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BLAST of mRNA_E-fasciculatus_F_contig14528.3271.1 vs. uniprot
Match: A0A6H5K209_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K209_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.540e-21
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:  145 MESPVRSVETGENGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETSPSQRFEAKSYLERQVEELSCADEDEAQEKVSQRLQLKQDQAQKKR 429
            MESPVRSVETG+NGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ETS SQRFEAKSYLERQVEELSCADEDEAQEKVSQRLQ KQDQA+KKR
Sbjct:    1 MESPVRSVETGKNGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXX---ETSTSQRFEAKSYLERQVEELSCADEDEAQEKVSQRLQFKQDQARKKR 92
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14528.3271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHM8_ECTSI6.180e-2497.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K209_9PHAE1.540e-2192.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14528contigE-fasciculatus_F_contig14528:1531..2571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size672
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14528.3271.1prot_E-fasciculatus_F_contig14528.3271.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14528 1675..2403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927937.8152099-UTR-E-fasciculatus_F_contig14528:1530..16741622927937.8152099-UTR-E-fasciculatus_F_contig14528:1530..1674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14528 1531..1674 +
1695995758.8059752-UTR-E-fasciculatus_F_contig14528:1530..16741695995758.8059752-UTR-E-fasciculatus_F_contig14528:1530..1674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14528 1531..1674 +
1622927937.8559515-UTR-E-fasciculatus_F_contig14528:2403..25711622927937.8559515-UTR-E-fasciculatus_F_contig14528:2403..2571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14528 2404..2571 +
1695995758.8423617-UTR-E-fasciculatus_F_contig14528:2403..25711695995758.8423617-UTR-E-fasciculatus_F_contig14528:2403..2571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14528 2404..2571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927937.8298264-CDS-E-fasciculatus_F_contig14528:1674..19581622927937.8298264-CDS-E-fasciculatus_F_contig14528:1674..1958Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14528 1675..1958 +
1695995758.8170905-CDS-E-fasciculatus_F_contig14528:1674..19581695995758.8170905-CDS-E-fasciculatus_F_contig14528:1674..1958Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14528 1675..1958 +
1622927937.8409848-CDS-E-fasciculatus_F_contig14528:2327..24031622927937.8409848-CDS-E-fasciculatus_F_contig14528:2327..2403Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14528 2328..2403 +
1695995758.8280056-CDS-E-fasciculatus_F_contig14528:2327..24031695995758.8280056-CDS-E-fasciculatus_F_contig14528:2327..2403Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14528 2328..2403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14528.3271.1

>prot_E-fasciculatus_F_contig14528.3271.1 ID=prot_E-fasciculatus_F_contig14528.3271.1|Name=mRNA_E-fasciculatus_F_contig14528.3271.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp
MESPVRSVETGENGSGGGGGGGGANQQQQDNKPTAAGQAGAGGAAAAETS
PSQRFEAKSYLERQVEELSCADEDEAQEKVSQRLQLKQDQAQKKRDVQLQ
RRRKGIAERVRTQRTSTTH*
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mRNA from alignment at E-fasciculatus_F_contig14528:1531..2571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14528.3271.1 ID=mRNA_E-fasciculatus_F_contig14528.3271.1|Name=mRNA_E-fasciculatus_F_contig14528.3271.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1041bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14528:1531..2571+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGACTCCTCTCACACACACGACCCCTCTTCTCTTGTCGTCTCGAGGGT
CTCTGACCAGAGCAGCTTTGTTCCCTCTCCTGGTCGGGGAGAGCAGAGAC
AGACAGACAGGCCCACAACCTCGTCCTGTGTTTTCCCCCCAAGAATGGAA
TCGCCCGTTCGCTCGGTGGAAACTGGAGAAAACGGGAGCGGGGGCGGCGG
CGGCGGCGGCGGGGCGAATCAGCAGCAGCAGGACAACAAGCCGACAGCAG
CGGGCCAGGCCGGGGCCGGAGGGGCAGCGGCGGCGGAGACATCGCCGTCC
CAGCGGTTCGAGGCCAAGTCGTACCTCGAGCGGCAGGTGGAGGAGCTCTC
GTGCGCTGACGAGGACGAGGCCCAGGAGAAGGTGTCTCAGCGCCTCCAGC
TAAAGCAGGACCAGGCTCAGAAGAAGAGGTAAAAATAGCGACTTGCTTCT
TTCTCTTCAACGAAAACATCCGAGAGATCAAGCGAAAAAATTCAGATCAA
AAAAAAATGGGAGAGGAGCGAGAGGGTTTTGACGTGTCTCACCCCCTTTG
TCGCTTCGGGGTGGCAATCCACCTACGATGCCATGTGCGCCGGTGGGGCA
ATTGCATTCAGCCTCGGAAAGCAAGAAGAGTCCACTCTTGATGTCCACGC
TCCTTCATGATAGACTCGCTAGAAGCGTACGGGTTTTGCCGTGCTACGGA
TGCCTGTAGTGCCACACCATCTTCTTGTTTTCTTTTCCGCAGACCCCGAT
TTTTGATTTTTTGTGTGCGCTTGCGACATCGCTCTTGTTTGCGGCAGGGA
CGTGCAGCTGCAGCGGAGGCGTAAGGGCATCGCTGAGAGGGTGAGAACAC
AACGCACATCAACCACGCACTGACTGGGGAACGCACCGCTCCTTCCTCCC
TGTAGCAGCAGTAGCGCTATACTTCGTGTGCCGCCAAACGCTCGGTCGGT
TGGGGGCATGTAGGGTGACTGACGTTCTAAAAAAACCCGCATGTAGGCTC
CCGCTTTCGTGAGCAGCAAGCAGGGCGGAAATGAAATGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14528:1531..2571+

>mRNA_E-fasciculatus_F_contig14528.3271.1 ID=mRNA_E-fasciculatus_F_contig14528.3271.1|Name=mRNA_E-fasciculatus_F_contig14528.3271.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14528:1531..2571+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAATCGCCCGTTCGCTCGGTGGAAACTGGAGAAAACGGGAGCGGGGG
CGGCGGCGGCGGCGGCGGGGCGAATCAGCAGCAGCAGGACAACAAGCCGA
CAGCAGCGGGCCAGGCCGGGGCCGGAGGGGCAGCGGCGGCGGAGACATCG
CCGTCCCAGCGGTTCGAGGCCAAGTCGTACCTCGAGCGGCAGGTGGAGGA
GCTCTCGTGCGCTGACGAGGACGAGGCCCAGGAGAAGGTGTCTCAGCGCC
TCCAGCTAAAGCAGGACCAGGCTCAGAAGAAGAGATGGAATCGCCCGTTC
GCTCGGTGGAAACTGGAGAAAACGGGAGCGGGGGCGGCGGCGGCGGCGGC
GGGGCGAATCAGCAGCAGCAGGACAACAAGCCGACAGCAGCGGGCCAGGC
CGGGGCCGGAGGGGCAGCGGCGGCGGAGACATCGCCGTCCCAGCGGTTCG
AGGCCAAGTCGTACCTCGAGCGGCAGGTGGAGGAGCTCTCGTGCGCTGAC
GAGGACGAGGCCCAGGAGAAGGTGTCTCAGCGCCTCCAGCTAAAGCAGGA
CCAGGCTCAGAAGAAGAGGGACGTGCAGCTGCAGCGGAGGCGTAAGGGCA
TCGCTGAGAGGGTGAGAACACAACGCACATCAACCACGCACTGAGGACGT
GCAGCTGCAGCGGAGGCGTAAGGGCATCGCTGAGAGGGTGAGAACACAAC
GCACATCAACCACGCACTGA
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