mRNA_E-fasciculatus_F_contig1452.3268.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1452.3268.1
Unique NamemRNA_E-fasciculatus_F_contig1452.3268.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1452.3268.1 vs. uniprot
Match: D7G8Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z8_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.890e-21
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 ASPTAEDMPGSELHDNSEWVRHTSRQCTLRTGVARVWPGLGVFQPVHSISRDETRTPCARGIHMPP 198
            ASPTAEDMPGSEL +NS  VR TSRQCTL   V  V PGLGVFQPVHSISRDET T    GI++PP
Sbjct:    5 ASPTAEDMPGSELQENSG-VRETSRQCTLHPSVTGVRPGLGVFQPVHSISRDET-TDAHGGIYLPP 68
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1452.3268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Z8_ECTSI1.890e-2172.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1452contigE-fasciculatus_F_contig1452:10698..12314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002470.1
Exons3
Model size247
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1452.3268.1prot_E-fasciculatus_F_contig1452.3268.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1452 10719..12310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927937.543002-UTR-E-fasciculatus_F_contig1452:10697..107181622927937.543002-UTR-E-fasciculatus_F_contig1452:10697..10718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1452 10698..10718 +
1695995758.6583068-UTR-E-fasciculatus_F_contig1452:10697..107181695995758.6583068-UTR-E-fasciculatus_F_contig1452:10697..10718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1452 10698..10718 +
1622927937.5958142-UTR-E-fasciculatus_F_contig1452:12310..123141622927937.5958142-UTR-E-fasciculatus_F_contig1452:12310..12314Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1452 12311..12314 +
1695995758.7063782-UTR-E-fasciculatus_F_contig1452:12310..123141695995758.7063782-UTR-E-fasciculatus_F_contig1452:12310..12314Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1452 12311..12314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927937.5592155-CDS-E-fasciculatus_F_contig1452:10718..107491622927937.5592155-CDS-E-fasciculatus_F_contig1452:10718..10749Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1452 10719..10749 +
1695995758.672111-CDS-E-fasciculatus_F_contig1452:10718..107491695995758.672111-CDS-E-fasciculatus_F_contig1452:10718..10749Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1452 10719..10749 +
1622927937.573888-CDS-E-fasciculatus_F_contig1452:11634..116481622927937.573888-CDS-E-fasciculatus_F_contig1452:11634..11648Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1452 11635..11648 +
1695995758.6887867-CDS-E-fasciculatus_F_contig1452:11634..116481695995758.6887867-CDS-E-fasciculatus_F_contig1452:11634..11648Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1452 11635..11648 +
1622927937.5853744-CDS-E-fasciculatus_F_contig1452:12133..123101622927937.5853744-CDS-E-fasciculatus_F_contig1452:12133..12310Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1452 12134..12310 +
1695995758.6975462-CDS-E-fasciculatus_F_contig1452:12133..123101695995758.6975462-CDS-E-fasciculatus_F_contig1452:12133..12310Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1452 12134..12310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1452.3268.1

>prot_E-fasciculatus_F_contig1452.3268.1 ID=prot_E-fasciculatus_F_contig1452.3268.1|Name=mRNA_E-fasciculatus_F_contig1452.3268.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=74bp
MPGSELHDNSEWVRHTSRQCTLRTGVARVWPGLGVFQPVHSISRDETRTP
CARGIHMPPGSAYGAPSPRGHAA*
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mRNA from alignment at E-fasciculatus_F_contig1452:10698..12314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1452.3268.1 ID=mRNA_E-fasciculatus_F_contig1452.3268.1|Name=mRNA_E-fasciculatus_F_contig1452.3268.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1617bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1452:10698..12314+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTTCTCCGACTGCGGAAGACATGCCAGGAAGTGAGCTGCACGATAACTC
AGGTGGGACATATATGTGGGCCTGTTGAAGGTGTTGGCGGCTTTCGCGTT
AAGACCGGCTCCCTCGCACCCTCTAATCTCTCTCGAACTGTTAACTATTG
TATGCACCTACTACATATGTACACTCATTTTTTGCCCTCTTGACCGCTCA
ATGAAGTACTGGGGTGTGCCCAATGTAACATGACGACAGCCACGGCAGCT
ACATTGTCTTGTACCATTGTGGTTGTAGGTGGTAAGGCGCGCGCCACTAG
CAATGCGGTCGTGAAGTATTGGCATGTTATGATTGGCGTGTATTTCAGCT
GCCCATCCAGACCCACGTCGTCACCTTCTCAACAATCCATCTAATTGTAC
AATGGTGATTCTTTCGGCCCTGAGGGCGCCTTCGGCGTCTCTTCGGCCTC
ACCCCAAAAGCCATCCCTCTCCTACCAACCAACCTGTTGATCTGACTCGC
CTGCTGTGTACGATGAATGCGCCTCATATTGTTTCATTCTAGCCGGTTTG
CTCGAACAGTTCGGCCGTTCAACGCCCCATGGTTTCCTTTGGTGGCAATA
GACCCACCCACTCGTAAGAGCTAGGGCGGAACAGCGGTCAGCTCCTCGTA
TCTAGAAACTAGACTCTGTAGACAAGACAGCTCCTGCAAAACTACATCAC
TCTACAAGCCGTCGTGTGTACATAGAGCCAACCCTCATTCCATGCGCAAG
TCAGGGCGAATGGCTCGGTCGCCTTTCGCGCGCTCGTCTTGTGCGGTGCG
CGCGTCGGCTTCCGAAAGCACCAGTGCCGTTCGCTCGTTACGTCCGTGGT
AAAGCAAACCCCCGGCCTTGGCGACCTTTAGGGGGGGGTCTCGTTCTGAG
CCCTCCCCGCCAGTCTCGGCTATCTTCGCTCGGCGAGAGTGGGTGCGGCA
CGTACAACACTCGAGTTGTTTTTCTCGTGAGCCGCCGCCCTAGATCTTTG
AGCAGACATTTTTTTTCCTCCAGTTACAAGTTGCGGTGTTGTTTGCAAAA
CACCAGCCTTCCTCCCGCTGTTGTCTTGAAGTACACACCGTCGTGCTGGT
CACGGGAGCCTTGCACCCAAGCTAGGTTTTGGTTCCAGTTACAAGACGAA
GAGCGTGTAGTAGCGAAATGTTGCGAGCGCTCAAACCGCCAACCACTCAT
GTGTGACCAATCCCCGTGTGGTTCGTTACAACGACGTTGCACGTCCAGCA
GGTTTTACTCAACTTGAACGTAGCATACTGCGACGGCGACAAGATACAGC
GTAAAAGAGCCCGCGGGCAGCACCCAAACAGTCATCCTCTTGGCTTTGTC
CTTGGCTGCAAATGCCCTTCTGTCGTCCTGTATTGAACATAACTTGCCCG
CCTACCTACACTGTCGTCTCTGTTCAGGGGCCCGAGACTTCACGCCAGTG
CACGCTGCGTACGGGCGTTGCCCGCGTTTGGCCCGGGCTAGGCGTGTTTC
AACCCGTGCACAGCATCTCGCGGGACGAGACCAGAACACCTTGTGCTCGG
GGTATCCACATGCCCCCTGGATCTGCGTACGGCGCCCCCTCCCCTCGTGG
GCATGCAGCCTGAAGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1452:10698..12314+

>mRNA_E-fasciculatus_F_contig1452.3268.1 ID=mRNA_E-fasciculatus_F_contig1452.3268.1|Name=mRNA_E-fasciculatus_F_contig1452.3268.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1452:10698..12314+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAGGAAGTGAGCTGCACGATAACTCAGATGCCAGGAAGTGAGCTGC
ACGATAACTCAGAGTGGGTGCGGCACAGTGGGTGCGGCACACTTCACGCC
AGTGCACGCTGCGTACGGGCGTTGCCCGCGTTTGGCCCGGGCTAGGCGTG
TTTCAACCCGTGCACAGCATCTCGCGGGACGAGACCAGAACACCTTGTGC
TCGGGGTATCCACATGCCCCCTGGATCTGCGTACGGCGCCCCCTCCCCTC
GTGGGCATGCAGCCTGAACTTCACGCCAGTGCACGCTGCGTACGGGCGTT
GCCCGCGTTTGGCCCGGGCTAGGCGTGTTTCAACCCGTGCACAGCATCTC
GCGGGACGAGACCAGAACACCTTGTGCTCGGGGTATCCACATGCCCCCTG
GATCTGCGTACGGCGCCCCCTCCCCTCGTGGGCATGCAGCCTGA
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