mRNA_E-fasciculatus_F_contig1452.3266.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1452.3266.1 vs. uniprot
Match: D7G900_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G900_ECTSI) HSP 1 Score: 976 bits (2524), Expect = 0.000e+0 Identity = 504/578 (87.20%), Postives = 526/578 (91.00%), Query Frame = 1
Query: 1 KVLTPSARPNFCMLMIDGDVFVSTLPRELCSRLHSSNLVPVECPIVVAASDSGVYGAGVSGEGDYSTYEGRDIEFDPPPPTTCVLTVAYIPPEVGSDGGPPEPRVKTFIASQNSQNTQSVGPSVDGVAAVFMECAPAVTFGTKLAAVHGQ-KPDGTSSSASGTDLTEPAGSSGPPQPVRRSSRATTVANSKAASQRVFPKLSPPSSSVPLEGADTVFLVDDHHPLLMARTADWLQKVLGEDAVILGGSTTCALCIGSQMFPDPEEKAGNYSRPSF----VVGVALRGVHALAISAKGYEGVGPVFKIDTTADPQGGPQAEKGKLLRDVTVVSSEGAAVRKSTALSIFQHEVCQASGESYPEKISLGVSASPAELLHCRPGSGR-QDPDQEIIEEARGAPPIAVDWTFGEVVALDDDVTPGQHARFLRSTNRLVLKDAEAAYHACRRRVEREGGVVLSSIHFTCCIRPDRVELSGRRVQQ---------PDGGDGDAVVTRVMALHQQEMVGLIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSVGTKSRASSVSQGL 1689
KVLTPSARPNFCMLMIDG+VF+ST RELCSR HSSNL+PVECPIVVA SDSGVYGAGVSGEGDYSTYEGRDIE DPPPPTTCVLTVAYIPPE G DGG P+PRVKTFIAS + QNT++ GPSVDGVA VF ECAPAVTFGTKLAAV+G+ KP GTSSSAS T+LTEPAGSSGPPQPVRRS RATTV SK ASQRV+PKL+PPSSSVPLE ADTVFLVDDHHPLLMARTADWLQK+LGED V+LGGSTTCALCIGSQ+FPDP+EK GN+SRPS VVGVALRGVHALAISAKGYEGVGPVFKIDTTADPQGGPQAEKGKLLRDVTVVSSEG AVRKSTALSIFQHEVCQASGESYPEKISLGVSASPAELL CR GSGR +D D EI EEA GAPP+AV+WTFGE VALDDDVTPGQHARFLRSTNRLVL+DAEAAYHAC RRVEREGGVVLSSI FTCC+R D VELSGRRVQQ PDGGDGDAVVTRVMALHQQEMV IKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSVGTKSRASSVSQGL
Sbjct: 13 KVLTPSARPNFCMLMIDGNVFLSTTLRELCSRFHSSNLIPVECPIVVAESDSGVYGAGVSGEGDYSTYEGRDIELDPPPPTTCVLTVAYIPPEGGIDGGLPQPRVKTFIASHSFQNTRNDGPSVDGVAPVFTECAPAVTFGTKLAAVNGENKPGGTSSSASCTNLTEPAGSSGPPQPVRRSIRATTVTKSKVASQRVYPKLTPPSSSVPLEDADTVFLVDDHHPLLMARTADWLQKLLGEDTVVLGGSTTCALCIGSQVFPDPDEKVGNHSRPSIQARVVVGVALRGVHALAISAKGYEGVGPVFKIDTTADPQGGPQAEKGKLLRDVTVVSSEGVAVRKSTALSIFQHEVCQASGESYPEKISLGVSASPAELLRCRSGSGRCEDLDDEIEEEATGAPPVAVNWTFGEAVALDDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVRLDHVELSGRRVQQEREQXXXXXPDGGDGDAVVTRVMALHQQEMVRFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSVGTKSRASSVSQGL 590
BLAST of mRNA_E-fasciculatus_F_contig1452.3266.1 vs. uniprot
Match: A0A6H5KTS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTS4_9PHAE) HSP 1 Score: 546 bits (1408), Expect = 1.050e-189 Identity = 280/325 (86.15%), Postives = 298/325 (91.69%), Query Frame = 1
Query: 4 VLTPSARPNFCMLMIDGDVFVSTLPRELCSRLHSSNLVPVECPIVVAASDSGVYGAGVSGEGDYSTYEGRDIEFDPPPPTTCVLTVAYIPPEVGSDGGPPEPRVKTFIASQNSQNTQSVGPSVDGVAAVFMECAPAVTFGTKLAAVHGQ-KPDGTSSSASGTDLTEPAGSSGPPQPVRRSSRATTVANSKAASQRVFPKLSPPSSSVPLEGADTVFLVDDHHPLLMARTADWLQKVLGEDAVILGGSTTCALCIGSQMFPDPEEKAGNYSRPSF----VVGVALRGVHALAISAKGYEGVGPVFKIDTTADPQGGPQAEKGKLLR 963
+LTPSARPNFCMLMIDG+VF+S RELCSR HSSNLVPVECPIVVA SDSGVYGAGVSGEG++STYEGRDIE DPPPPTTCVLTVAYIPPE GSDGG P+PRVKTFIAS N QNT++ GPSVDGVA VF ECAPAVTFGTKLAAV+G+ KP GTSSSASGT+LTEPAGSSGPPQPVRRSSRATTVANSK ASQRV+PKL+PPSSSVPLE ADTVFLV DHHPLLMARTADWLQK+LGED V+LGGSTTCALCIGSQMFPDPEEK NYSRPS VVGVALRGVHALAISAKGYEGVGPVFKIDTTADPQGGPQAEKG++ +
Sbjct: 1 MLTPSARPNFCMLMIDGNVFLSRTLRELCSRFHSSNLVPVECPIVVAESDSGVYGAGVSGEGNHSTYEGRDIELDPPPPTTCVLTVAYIPPEGGSDGGLPQPRVKTFIASHNFQNTRNDGPSVDGVAPVFTECAPAVTFGTKLAAVNGENKPGGTSSSASGTNLTEPAGSSGPPQPVRRSSRATTVANSKVASQRVYPKLTPPSSSVPLEDADTVFLVGDHHPLLMARTADWLQKLLGEDTVVLGGSTTCALCIGSQMFPDPEEKVRNYSRPSIQARVVVGVALRGVHALAISAKGYEGVGPVFKIDTTADPQGGPQAEKGEVRK 325
BLAST of mRNA_E-fasciculatus_F_contig1452.3266.1 vs. uniprot
Match: A0A6H5KT67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT67_9PHAE) HSP 1 Score: 214 bits (544), Expect = 3.960e-63 Identity = 105/122 (86.07%), Postives = 111/122 (90.98%), Query Frame = 1
Query: 1036 VCQASGESYPEKISLGVSASPAELLHCRPGSGR-QDPDQEIIEEARGAPPIAVDWTFGEVVALDDDVTPGQHARFLRSTNRLVLKDAEAAYHACRRRVEREGGVVLSSIHFTCCIRPDRVEL 1398
VCQASGESYPEKI LGVSASPAELL CR GSGR +D D+EI EEARGAPPIAV+WTFGE VAL DDVTPGQHARFLRSTNRLVL+DAEAAYHAC RRVEREGGVVLSSI FTCC+RPD VE+
Sbjct: 2 VCQASGESYPEKIYLGVSASPAELLRCRSGSGRCEDLDEEIEEEARGAPPIAVNWTFGEAVALGDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVRPDHVEV 123
BLAST of mRNA_E-fasciculatus_F_contig1452.3266.1 vs. uniprot
Match: A0A6H5KRG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG6_9PHAE) HSP 1 Score: 133 bits (335), Expect = 5.270e-34 Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 1
Query: 1480 MVGLIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSVGTKSRASSVSQGL 1689
MV IKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGS GTKSRASSVSQGL
Sbjct: 1 MVKFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSFGTKSRASSVSQGL 70 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1452.3266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1452.3266.1 >prot_E-fasciculatus_F_contig1452.3266.1 ID=prot_E-fasciculatus_F_contig1452.3266.1|Name=mRNA_E-fasciculatus_F_contig1452.3266.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=552bp MLMIDGDVFVSTLPRELCSRLHSSNLVPVECPIVVAASDSGVYGAGVSGEback to top mRNA from alignment at E-fasciculatus_F_contig1452:634..4626+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1452.3266.1 ID=mRNA_E-fasciculatus_F_contig1452.3266.1|Name=mRNA_E-fasciculatus_F_contig1452.3266.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3993bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1452:634..4626+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1452:634..4626+ >mRNA_E-fasciculatus_F_contig1452.3266.1 ID=mRNA_E-fasciculatus_F_contig1452.3266.1|Name=mRNA_E-fasciculatus_F_contig1452.3266.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3312bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1452:634..4626+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |