mRNA_E-fasciculatus_F_contig14518.3264.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14518.3264.1
Unique NamemRNA_E-fasciculatus_F_contig14518.3264.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14518.3264.1 vs. uniprot
Match: D7G159_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G159_ECTSI)

HSP 1 Score: 400 bits (1028), Expect = 7.170e-136
Identity = 223/286 (77.97%), Postives = 232/286 (81.12%), Query Frame = 1 
Query:    1 RVAKYLLETCNVDAGTADNVGYTPLAIAAQGGRVAIVRMLLRRGVANLGKNAYRDAITGVAMTGNMEMLRELVFVEGGVHLLGAKTSQLMTGLHFSAGYCHARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWRWPASPALGT-PDSAAATG--ALALPGLDAAEPGSAKNAAQSALLXXXXXXXXXXXXLVPLPEAEKEWVDSDESFDEAFASAMAGSWRLNVAVFRRXXXXXXXACGSDGGYSPVEQRAALVSRFE 849
            +VAKYLLETCNVDAGTAD+VGYTPLAI+AQGG V+IVRMLL+RGVA LGKNAYRDAITGVAMTGNMEMLRELV+VEGGVHLLGAKTSQLMT LHFSAGYCHARATALLLHAGADEGAVDRNG TPLDVVDTKRSPQ                GPAYRALSWRWPAS A  T PDSAAATG  ALALPGLDAAEPGSAK+AAQ                LVP PE EKEWVDSDESFDEAFASA+AGSWRLNVAVFRR        CGS+GGY  VEQRAALVSRFE
Sbjct:  194 KVAKYLLETCNVDAGTADSVGYTPLAISAQGGHVSIVRMLLKRGVALLGKNAYRDAITGVAMTGNMEMLRELVYVEGGVHLLGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGGTPLDVVDTKRSPQ----------------GPAYRALSWRWPASSAFETTPDSAAATGGAALALPGLDAAEPGSAKDAAQ----------------LVPYPETEKEWVDSDESFDEAFASAVAGSWRLNVAVFRRSRPPPPP-CGSEGGYPAVEQRAALVSRFE 446
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14518.3264.1 vs. uniprot
Match: A0A6H5K5E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5E4_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 1.540e-119
Identity = 202/252 (80.16%), Postives = 208/252 (82.54%), Query Frame = 1 
Query:  115 MLLRRGVANLGKNAYRDAITGVAMTGNMEMLRELVFVEGGVHLLGAKTSQLMTGLHFSAGYCHARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWRWPASPALGT-PDSAAATG--ALALPGLDAAEPGSAKNAAQSALLXXXXXXXXXXXXLVPLPEAEKEWVDSDESFDEAFASAMAGSWRLN--VAVFRRXXXXXXXACGSDGGYSPVEQRAALVSRFERW 855
            MLL+RGVA LG NAYRDAITGVAMTGN+EMLRELV+VEGGVHLLGAKTSQLMT LHFSAGYCHARATALLLHAGADEGAVDRNGDTPL+VVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWRWPASPA  T PDSAAA G  ALALPGLDAAEPGSAKNAAQ                L+P PE EKEWVD DESFDEAFASAMAGSWRLN  VAVFRR   XXXX           EQRAALVSRFER+
Sbjct:    1 MLLKRGVAFLGTNAYRDAITGVAMTGNIEMLRELVYVEGGVHLLGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPLNVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWRWPASPAFETTPDSAAAMGGAALALPGLDAAEPGSAKNAAQ----------------LIPYPETEKEWVDRDESFDEAFASAMAGSWRLNLNVAVFRRSRPXXXXXXXXXXXXX-AEQRAALVSRFERY 235
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14518.3264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G159_ECTSI7.170e-13677.97Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5K5E4_9PHAE1.540e-11980.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14518contigE-fasciculatus_F_contig14518:1646..2880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score405.2
Seed ortholog evalue2.5e-110
Seed eggNOG ortholog2880.D7G159
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_005370.1
Exons2
Model size855
Cds size855
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927936.9249635-CDS-E-fasciculatus_F_contig14518:1645..22661622927936.9249635-CDS-E-fasciculatus_F_contig14518:1645..2266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14518 1646..2266 -
1695995758.3641307-CDS-E-fasciculatus_F_contig14518:1645..22661695995758.3641307-CDS-E-fasciculatus_F_contig14518:1645..2266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14518 1646..2266 -
1622927936.9464161-CDS-E-fasciculatus_F_contig14518:2646..28801622927936.9464161-CDS-E-fasciculatus_F_contig14518:2646..2880Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14518 2647..2880 -
1695995758.3744938-CDS-E-fasciculatus_F_contig14518:2646..28801695995758.3744938-CDS-E-fasciculatus_F_contig14518:2646..2880Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14518 2647..2880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14518.3264.1prot_E-fasciculatus_F_contig14518.3264.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14518 1646..2880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14518.3264.1

>prot_E-fasciculatus_F_contig14518.3264.1 ID=prot_E-fasciculatus_F_contig14518.3264.1|Name=mRNA_E-fasciculatus_F_contig14518.3264.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=285bp
RVAKYLLETCNVDAGTADNVGYTPLAIAAQGGRVAIVRMLLRRGVANLGK
NAYRDAITGVAMTGNMEMLRELVFVEGGVHLLGAKTSQLMTGLHFSAGYC
HARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRML
LQGPAYRALSWRWPASPALGTPDSAAATGALALPGLDAAEPGSAKNAAQS
ALLAAGPGSAENAAQLVPLPEAEKEWVDSDESFDEAFASAMAGSWRLNVA
VFRRRRPPPPPACGSDGGYSPVEQRAALVSRFERW
back to top

mRNA from alignment at E-fasciculatus_F_contig14518:1646..2880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14518.3264.1 ID=mRNA_E-fasciculatus_F_contig14518.3264.1|Name=mRNA_E-fasciculatus_F_contig14518.3264.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1235bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14518:1646..2880- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGTCGCCAAGTACCTGCTGGAGACCTGCAACGTGGACGCAGGGACCGC
GGACAACGTAGGCTACACGCCGCTGGCGATAGCCGCCCAGGGCGGGCGCG
TGGCCATCGTGCGCATGCTGCTCAGGCGCGGCGTGGCCAACCTGGGGAAG
AACGCCTACCGCGACGCGATCACGGGTGTTGCCATGACGGGAAACATGGA
GATGCTCCGAGAGCTTGTGTTTGTCGAGGGAGGGGTGAGTTATTTTTGCA
TGATTGGGATCGATCTCGTGTGGGTGGGAGAAGAAACGGGTGGCGTGATC
AGCGAGTGTTTTTTTTAAGGTGTGGTCGTGCGTAGTTTGTTTGCGGCTGT
CTAGTCTGTCTAGCGGTGTTGACGCGAGGGGGCTTCTTGTTTTCCTTCTC
GAGGGACGACTCCTTTGTTGGGAGAACCTAACGCGTGTCTGGTTTGTTGT
TCTCCCTAGAGCAAGAGAAGACCACCGAGAAAAACGCACCCACTCACCTG
TCCGAACGGCCCTTCCATTATCTAATTGGGGGCCCTACTAAATGTCTAAA
GGAACGAATGAACATAAAAATGAGAGCATCGCGCGTGCCTCACACGACGT
ATGAACCGAAGCAGGTCCATCTCCTAGGCGCGAAGACCTCGCAGCTCATG
ACGGGGCTCCACTTCTCTGCCGGGTACTGCCACGCCCGAGCCACGGCCCT
GCTGCTCCACGCCGGCGCCGACGAGGGCGCGGTGGACAGGAACGGCGACA
CCCCCCTGGACGTGGTCGACACCAAGCGGTCCCCCCAGGTGCGGCACGGC
GTGGGCCGCCGCCGCGTGAGGCGCATGCTGCTACAGGGGCCGGCGTACCG
GGCCCTGTCTTGGAGGTGGCCCGCCTCCCCCGCGCTTGGAACTCCCGATT
CCGCCGCTGCCACGGGTGCTCTCGCTCTGCCGGGGTTAGATGCGGCGGAA
CCTGGGTCGGCGAAAAATGCGGCGCAATCGGCCCTCCTTGCGGCGGGACC
GGGGTCGGCGGAAAACGCGGCGCAATTGGTTCCCTTGCCCGAGGCGGAGA
AGGAGTGGGTGGATAGCGACGAGAGTTTCGACGAGGCGTTCGCGTCGGCG
ATGGCCGGGTCGTGGAGGCTTAACGTGGCGGTCTTCCGCCGAAGACGGCC
GCCTCCGCCGCCAGCCTGTGGCAGCGACGGCGGGTACTCGCCGGTGGAGC
AGCGTGCGGCGCTCGTGTCGCGCTTTGAAAGGTGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14518:1646..2880-

>mRNA_E-fasciculatus_F_contig14518.3264.1 ID=mRNA_E-fasciculatus_F_contig14518.3264.1|Name=mRNA_E-fasciculatus_F_contig14518.3264.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1710bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14518:1646..2880- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGTCGCCAAGTACCTGCTGGAGACCTGCAACGTGGACGCAGGGACCGC
GGACAACGTAGGCTACACGCCGCTGGCGATAGCCGCCCAGGGCGGGCGCG
TGGCCATCGTGCGCATGCTGCTCAGGCGCGGCGTGGCCAACCTGGGGAAG
AACGCCTACCGCGACGCGATCACGGGTGTTGCCATGACGGGAAACATGGA
GATGCTCCGAGAGCTTGTGTTTGTCGAGGGAGGGAGGGTCGCCAAGTACC
TGCTGGAGACCTGCAACGTGGACGCAGGGACCGCGGACAACGTAGGCTAC
ACGCCGCTGGCGATAGCCGCCCAGGGCGGGCGCGTGGCCATCGTGCGCAT
GCTGCTCAGGCGCGGCGTGGCCAACCTGGGGAAGAACGCCTACCGCGACG
CGATCACGGGTGTTGCCATGACGGGAAACATGGAGATGCTCCGAGAGCTT
GTGTTTGTCGAGGGAGGGGTCCATCTCCTAGGCGCGAAGACCTCGCAGCT
CATGACGGGGCTCCACTTCTCTGCCGGGTACTGCCACGCCCGAGCCACGG
CCCTGCTGCTCCACGCCGGCGCCGACGAGGGCGCGGTGGACAGGAACGGC
GACACCCCCCTGGACGTGGTCGACACCAAGCGGTCCCCCCAGGTGCGGCA
CGGCGTGGGCCGCCGCCGCGTGAGGCGCATGCTGCTACAGGGGCCGGCGT
ACCGGGCCCTGTCTTGGAGGTGGCCCGCCTCCCCCGCGCTTGGAACTCCC
GATTCCGCCGCTGCCACGGGTGCTCTCGCTCTGCCGGGGTTAGATGCGGC
GGAACCTGGGTCGGCGAAAAATGCGGCGCAATCGGCCCTCCTTGCGGCGG
GACCGGGGTCGGCGGAAAACGCGGCGCAATTGGTTCCCTTGCCCGAGGCG
GAGAAGGAGTGGGTGGATAGCGACGAGAGTTTCGACGAGGCGTTCGCGTC
GGCGATGGCCGGGTCGTGGAGGCTTAACGTGGCGGTCTTCCGCCGAAGAC
GGCCGCCTCCGCCGCCAGCCTGTGGCAGCGACGGCGGGTACTCGCCGGTG
GAGCAGCGTGCGGCGCTCGTGTCGCGCTTTGAAAGGTGGGTCCATCTCCT
AGGCGCGAAGACCTCGCAGCTCATGACGGGGCTCCACTTCTCTGCCGGGT
ACTGCCACGCCCGAGCCACGGCCCTGCTGCTCCACGCCGGCGCCGACGAG
GGCGCGGTGGACAGGAACGGCGACACCCCCCTGGACGTGGTCGACACCAA
GCGGTCCCCCCAGGTGCGGCACGGCGTGGGCCGCCGCCGCGTGAGGCGCA
TGCTGCTACAGGGGCCGGCGTACCGGGCCCTGTCTTGGAGGTGGCCCGCC
TCCCCCGCGCTTGGAACTCCCGATTCCGCCGCTGCCACGGGTGCTCTCGC
TCTGCCGGGGTTAGATGCGGCGGAACCTGGGTCGGCGAAAAATGCGGCGC
AATCGGCCCTCCTTGCGGCGGGACCGGGGTCGGCGGAAAACGCGGCGCAA
TTGGTTCCCTTGCCCGAGGCGGAGAAGGAGTGGGTGGATAGCGACGAGAG
TTTCGACGAGGCGTTCGCGTCGGCGATGGCCGGGTCGTGGAGGCTTAACG
TGGCGGTCTTCCGCCGAAGACGGCCGCCTCCGCCGCCAGCCTGTGGCAGC
GACGGCGGGTACTCGCCGGTGGAGCAGCGTGCGGCGCTCGTGTCGCGCTT
TGAAAGGTGG
back to top