mRNA_E-fasciculatus_F_contig14508.3259.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14508.3259.1
Unique NamemRNA_E-fasciculatus_F_contig14508.3259.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14508.3259.1 vs. uniprot
Match: D8LQW7_ECTSI (Peptidase aspartic, catalytic UBA-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW7_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 8.490e-42
Identity = 104/142 (73.24%), Postives = 112/142 (78.87%), Query Frame = 1 
Query:  343 ATQAPSARRARDGLPHSLSSTSIAGAAAAATTNAPMTRSRNSSTRGRGWRR-PVLSAT---RALHLAVALLALAGRMVPVRGAGGDLGSRSEWQHPGSRDRQGNEAGGDGSSGRGRREARRGYAAAFPSRGRSKREGAALSE 756
            ATQAPS RRA+DG  HSL S    GAAAA TT  PMTR R+S+TRG GWRR PV S T   RAL LAVALLALAGR+VP +GAGGDLG RSEWQHP SR R+GN+AGGDG SGRGRREARRGYA AFP R RS+REGA  SE
Sbjct:    2 ATQAPSIRRAKDGAQHSLPSAPTDGAAAA-TTKVPMTRQRHSNTRGWGWRRCPVFSTTTTIRALRLAVALLALAGRLVPAQGAGGDLGPRSEWQHPRSRGRRGNKAGGDG-SGRGRREARRGYAGAFPCRERSEREGAVASE 141
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14508.3259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQW7_ECTSI8.490e-4273.24Peptidase aspartic, catalytic UBA-like n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14508contigE-fasciculatus_F_contig14508:1165..2620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue3.9e-38
Seed eggNOG ortholog2880.D8LQW7
KEGG koko:K11885
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG0012@1,KOG0012@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAspartic peptidase, DDI1-type
Ec32 orthologEc-07_001860.2
Exons2
Model size762
Cds size759
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927935.7529583-CDS-E-fasciculatus_F_contig14508:1164..12711622927935.7529583-CDS-E-fasciculatus_F_contig14508:1164..1271Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14508 1165..1271 +
1695995757.9343748-CDS-E-fasciculatus_F_contig14508:1164..12711695995757.9343748-CDS-E-fasciculatus_F_contig14508:1164..1271Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14508 1165..1271 +
1622927935.766702-CDS-E-fasciculatus_F_contig14508:1967..26191622927935.766702-CDS-E-fasciculatus_F_contig14508:1967..2619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14508 1968..2619 +
1695995757.945456-CDS-E-fasciculatus_F_contig14508:1967..26191695995757.945456-CDS-E-fasciculatus_F_contig14508:1967..2619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14508 1968..2619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14508.3259.1prot_E-fasciculatus_F_contig14508.3259.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14508 1165..2619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14508.3259.1

>prot_E-fasciculatus_F_contig14508.3259.1 ID=prot_E-fasciculatus_F_contig14508.3259.1|Name=mRNA_E-fasciculatus_F_contig14508.3259.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=253bp
RAAGGWHSKRERWCLLPQHLARGILLFLCRGSQHTWDATKTNLTTPGATT
AVFSVTGVRQRAPNPPLRPPPVAACQFDSAVMIEYVSTNQRRRFDDACRC
DIKRRQLLPTAPTTATQAPSARRARDGLPHSLSSTSIAGAAAAATTNAPM
TRSRNSSTRGRGWRRPVLSATRALHLAVALLALAGRMVPVRGAGGDLGSR
SEWQHPGSRDRQGNEAGGDGSSGRGRREARRGYAAAFPSRGRSKREGAAL
SEE
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mRNA from alignment at E-fasciculatus_F_contig14508:1165..2620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14508.3259.1 ID=mRNA_E-fasciculatus_F_contig14508.3259.1|Name=mRNA_E-fasciculatus_F_contig14508.3259.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14508:1165..2620+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGCAGCAGGAGGGTGGCACAGCAAGCGAGAGCGGTGGTGCTTGCTACC
CCAGCACCTTGCTAGAGGTATATTGCTCTTCCTCTGCCGCGGGTCCCAAC
ACACCTGGTGAGCTCCCGATCCTATTGAAAATGTCTCAACGGCAGGTTGC
ACCGCCGAAGGTACCAACTGACTTTGAACGTGGGGATGTGTGTTTGAAGT
TTGAACTGCGTAGACCGATGTGCGTCGAGAATGTCTATCGGAACAAAGGG
ATGCTTGCAGAGGGGTTCTGCTGTGGTGTTTTCCTCCACTGACGCACAGG
CGTGAAATAGCAGGGTTGGTCAGCGATTGCCGGCTCATGCACATCCGACC
AGAAACAATCTCCGCTCTTCTGTTCTTCCCGCAATGTCGGCACTCCCCGT
GTTCGTCGTCTCCAGACAACTGACAACAACCATGTTTAATACAGCAGTGC
AGCAGTAGACTAGTGGCTGCAGGAGTTGGTAACCCCAATGCGCCTCACCA
TTGGATATTGAGAAGGAATACATAGCCGACATCAAATTGTGGCCGTGGCT
TGGACAGCGTGCGTGATGTTCCGCCTTAGTACAGGTGACTAAAATAAAAT
ATTGTGTAGTCTACTGTAAGTAAAAATAATCCGGTATAGACTAGCGCTGC
CACGCGGTTACCTCTTTCCCTTCACCTGCCGTGCGACAACGATTGTACAT
GTTTGTGTCGTTGACACCAAACAAGCTCCTTCGGTTGTTCTGAGTGCGGG
GCAGCACAACTTTTAACGCTTCGTACATCTCGACCTTGACTTGCTTGGTA
TAGGGACGCGACGAAGACCAACCTGACGACCCCGGGGGCAACGACAGCAG
TATTTAGTGTCACCGGTGTCCGTCAACGGGCACCTAACCCGCCGCTTAGG
CCCCCTCCCGTGGCGGCCTGCCAGTTTGATTCAGCGGTGATGATCGAGTA
CGTCAGCACCAACCAAAGGAGACGGTTCGACGACGCATGTCGGTGCGACA
TCAAACGGCGCCAGCTGCTGCCGACGGCGCCGACGACGGCAACACAAGCA
CCCTCTGCTAGGCGAGCCAGGGATGGCCTGCCGCACTCACTGTCCTCCAC
CTCGATCGCCGGAGCCGCCGCCGCTGCTACGACCAACGCGCCGATGACGA
GATCACGCAACTCAAGCACCCGTGGACGGGGGTGGCGGCGTCCGGTTCTC
TCAGCCACCAGGGCGTTGCACCTGGCTGTTGCTCTCCTCGCCCTTGCGGG
AAGAATGGTACCGGTTCGGGGCGCAGGCGGTGACCTCGGGTCCAGGAGCG
AGTGGCAGCACCCCGGCTCCCGAGATCGTCAGGGAAACGAAGCGGGGGGA
GATGGCAGCAGCGGGCGTGGGCGGAGGGAGGCGAGGAGGGGGTACGCGGC
AGCCTTCCCTAGCCGAGGGCGGAGCAAGCGAGAAGGAGCGGCGTTATCGG
AGGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14508:1165..2620+

>mRNA_E-fasciculatus_F_contig14508.3259.1 ID=mRNA_E-fasciculatus_F_contig14508.3259.1|Name=mRNA_E-fasciculatus_F_contig14508.3259.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14508:1165..2620+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGCAGCAGGAGGGTGGCACAGCAAGCGAGAGCGGTGGTGCTTGCTACC
CCAGCACCTTGCTAGAGGTATATTGCTCTTCCTCTGCCGCGGGTCCCAAC
ACACCTGAGAGCAGCAGGAGGGTGGCACAGCAAGCGAGAGCGGTGGTGCT
TGCTACCCCAGCACCTTGCTAGAGGTATATTGCTCTTCCTCTGCCGCGGG
TCCCAACACACCTGGGACGCGACGAAGACCAACCTGACGACCCCGGGGGC
AACGACAGCAGTATTTAGTGTCACCGGTGTCCGTCAACGGGCACCTAACC
CGCCGCTTAGGCCCCCTCCCGTGGCGGCCTGCCAGTTTGATTCAGCGGTG
ATGATCGAGTACGTCAGCACCAACCAAAGGAGACGGTTCGACGACGCATG
TCGGTGCGACATCAAACGGCGCCAGCTGCTGCCGACGGCGCCGACGACGG
CAACACAAGCACCCTCTGCTAGGCGAGCCAGGGATGGCCTGCCGCACTCA
CTGTCCTCCACCTCGATCGCCGGAGCCGCCGCCGCTGCTACGACCAACGC
GCCGATGACGAGATCACGCAACTCAAGCACCCGTGGACGGGGGTGGCGGC
GTCCGGTTCTCTCAGCCACCAGGGCGTTGCACCTGGCTGTTGCTCTCCTC
GCCCTTGCGGGAAGAATGGTACCGGTTCGGGGCGCAGGCGGTGACCTCGG
GTCCAGGAGCGAGTGGCAGCACCCCGGCTCCCGAGATCGTCAGGGAAACG
AAGCGGGGGGAGATGGCAGCAGCGGGCGTGGGCGGAGGGAGGCGAGGAGG
GGGTACGCGGCAGCCTTCCCTAGCCGAGGGCGGAGCAAGCGAGAAGGAGC
GGCGTTATCGGAGGAGGGACGCGACGAAGACCAACCTGACGACCCCGGGG
GCAACGACAGCAGTATTTAGTGTCACCGGTGTCCGTCAACGGGCACCTAA
CCCGCCGCTTAGGCCCCCTCCCGTGGCGGCCTGCCAGTTTGATTCAGCGG
TGATGATCGAGTACGTCAGCACCAACCAAAGGAGACGGTTCGACGACGCA
TGTCGGTGCGACATCAAACGGCGCCAGCTGCTGCCGACGGCGCCGACGAC
GGCAACACAAGCACCCTCTGCTAGGCGAGCCAGGGATGGCCTGCCGCACT
CACTGTCCTCCACCTCGATCGCCGGAGCCGCCGCCGCTGCTACGACCAAC
GCGCCGATGACGAGATCACGCAACTCAAGCACCCGTGGACGGGGGTGGCG
GCGTCCGGTTCTCTCAGCCACCAGGGCGTTGCACCTGGCTGTTGCTCTCC
TCGCCCTTGCGGGAAGAATGGTACCGGTTCGGGGCGCAGGCGGTGACCTC
GGGTCCAGGAGCGAGTGGCAGCACCCCGGCTCCCGAGATCGTCAGGGAAA
CGAAGCGGGGGGAGATGGCAGCAGCGGGCGTGGGCGGAGGGAGGCGAGGA
GGGGGTACGCGGCAGCCTTCCCTAGCCGAGGGCGGAGCAAGCGAGAAGGA
GCGGCGTTATCGGAGGAG
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