mRNA_E-fasciculatus_F_contig14505.3258.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14505.3258.1
Unique NamemRNA_E-fasciculatus_F_contig14505.3258.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Match: D7FHR9_ECTSI (Oxidoreductase, NAD-binding, myo-inositol 2-dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHR9_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 7.330e-21
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 1
Query:    4 QAFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPVSLSEITA 144
            +AFCKILEEGG+VTPSGEDGLAALKMAMACDKSLKEGRPV+LSEITA
Sbjct:  325 RAFCKILEEGGDVTPSGEDGLAALKMAMACDKSLKEGRPVNLSEITA 371          
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Match: A0A835Z516_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z516_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.270e-15
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    4 QAFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPVSLSEI 138
            +AFC+IL+ GGEV+PSG+DG AAL+MAMACDKSLKEGRPV +SE+
Sbjct:  326 KAFCEILKSGGEVSPSGDDGRAALEMAMACDKSLKEGRPVKISEV 370          
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Match: A0A835Z446_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z446_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.930e-12
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    4 QAFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPVSLSEI 138
            +AFC+IL+ GG V+PSG+DG AAL+MAMACD SL+ GRPV +SE+
Sbjct:  343 KAFCEILKSGGAVSPSGDDGRAALEMAMACDMSLRLGRPVLMSEV 387          
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Match: A0A835Z9N2_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.320e-11
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 1
Query:    4 QAFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPVSLSEI 138
            +AFC +L+ GGEV+PSG+DG  AL+MAMACD SL+ GRPV +SE+
Sbjct:  312 KAFCALLKAGGEVSPSGDDGARALEMAMACDLSLRLGRPVLMSEV 356          
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Match: A0A4D9CRG6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRG6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.210e-7
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1
Query:    7 AFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPV 123
            AFC+ L+EG   +PSG DG  AL +AMACDKS KE RPV
Sbjct:  327 AFCQTLQEGKAPSPSGHDGKMALVLAMACDKSFKEKRPV 365          
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Match: A0A6J4UVP2_9DEIN (Myo-inositol 2-dehydrogenase n=1 Tax=uncultured Truepera sp. TaxID=543023 RepID=A0A6J4UVP2_9DEIN)

HSP 1 Score: 50.8 bits (120), Expect = 5.150e-6
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 LQAFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPVSLSEIT 141
            +QAF   + EG   TP  ED + AL++A+A  KSLKE RPV +SEIT
Sbjct:  290 VQAFVDSVREGRTPTPGAEDAVEALRVALAATKSLKEKRPVEVSEIT 336          
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Match: UPI001F01390B (inositol 2-dehydrogenase n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=UPI001F01390B)

HSP 1 Score: 50.1 bits (118), Expect = 9.680e-6
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 LQAFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPVSLSEI 138
            +  + K L+ G EV  SG DGL +LK+ +A  KSLKE RPV LSEI
Sbjct:  289 MSDYIKSLKNGTEVPASGNDGLQSLKIGLAAIKSLKENRPVKLSEI 334          
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Match: UPI000D30ECA5 (oxidoreductase n=1 Tax=Desmospora activa TaxID=500615 RepID=UPI000D30ECA5)

HSP 1 Score: 45.4 bits (106), Expect = 3.300e-5
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 1
Query:    1 LQAFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPVSLSEI 138
            ++AF + + +  EV  +G DGL A  +A A ++SLKEGRPV +SE+
Sbjct:    1 MRAFIQSITDNQEVLANGNDGLQAELIAHAANRSLKEGRPVKISEV 46          
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Match: A0A7W8KCJ5_9DEIO (Myo-inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase n=2 Tax=Deinococcus TaxID=1298 RepID=A0A7W8KCJ5_9DEIO)

HSP 1 Score: 48.5 bits (114), Expect = 3.400e-5
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    1 LQAFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPVSLSEITA 144
            + AF   L EG   TP   D + +L++A+AC +SLKEGRPV + ++ A
Sbjct:  297 IAAFVLALREGRAPTPGAHDAVESLRLALACTRSLKEGRPVRVQDVQA 344          
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Match: A0A0F5FW00_9HYPH (Inositol 2-dehydrogenase n=1 Tax=Devosia geojensis TaxID=443610 RepID=A0A0F5FW00_9HYPH)

HSP 1 Score: 48.1 bits (113), Expect = 4.640e-5
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    1 LQAFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPVSLSE 135
            ++AF   +E   + TPSG+DGLAAL +A A  KS+KEGR V +SE
Sbjct:  287 IKAFIDAVESKSKPTPSGQDGLAALVLAEAALKSVKEGRAVKVSE 331          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14505.3258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FHR9_ECTSI7.330e-2193.62Oxidoreductase, NAD-binding, myo-inositol 2-dehydr... [more]
A0A835Z516_9STRA3.270e-1575.56Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A835Z446_9STRA9.930e-1266.67Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A835Z9N2_9STRA3.320e-1164.44Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A4D9CRG6_9STRA4.210e-764.10Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6J4UVP2_9DEIN5.150e-653.19Myo-inositol 2-dehydrogenase n=1 Tax=uncultured Tr... [more]
UPI001F01390B9.680e-654.35inositol 2-dehydrogenase n=2 Tax=Flavobacteriaceae... [more]
UPI000D30ECA53.300e-545.65oxidoreductase n=1 Tax=Desmospora activa TaxID=500... [more]
A0A7W8KCJ5_9DEIO3.400e-543.75Myo-inositol 2-dehydrogenase/D-chiro-inositol 1-de... [more]
A0A0F5FW00_9HYPH4.640e-553.33Inositol 2-dehydrogenase n=1 Tax=Devosia geojensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14505contigE-fasciculatus_F_contig14505:3134..3280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue8e-17
Seed eggNOG ortholog2880.D7FHR9
EggNOG free text desc.D-xylose 1-dehydrogenase (NADP ) activity
EggNOG OGsCOG0673@1,KOG2741@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927935.7206275-CDS-E-fasciculatus_F_contig14505:3133..32801622927935.7206275-CDS-E-fasciculatus_F_contig14505:3133..3280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14505 3134..3280 -
1695995757.92221-CDS-E-fasciculatus_F_contig14505:3133..32801695995757.92221-CDS-E-fasciculatus_F_contig14505:3133..3280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14505 3134..3280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14505.3258.1prot_E-fasciculatus_F_contig14505.3258.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14505 3134..3280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14505.3258.1

>prot_E-fasciculatus_F_contig14505.3258.1 ID=prot_E-fasciculatus_F_contig14505.3258.1|Name=mRNA_E-fasciculatus_F_contig14505.3258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=49bp
LQAFCKILEEGGEVTPSGEDGLAALKMAMACDKSLKEGRPVSLSEITA*
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mRNA from alignment at E-fasciculatus_F_contig14505:3134..3280-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14505.3258.1 ID=mRNA_E-fasciculatus_F_contig14505.3258.1|Name=mRNA_E-fasciculatus_F_contig14505.3258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14505:3134..3280- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCAGGCATTCTGCAAGATCTTGGAGGAGGGTGGTGAAGTCACTCCTTC GGGAGAAGACGGCTTGGCCGCCCTCAAGATGGCCATGGCATGCGACAAGT CCCTTAAGGAGGGCCGCCCAGTCAGCCTCTCCGAGATCACTGCTTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14505:3134..3280-

>mRNA_E-fasciculatus_F_contig14505.3258.1 ID=mRNA_E-fasciculatus_F_contig14505.3258.1|Name=mRNA_E-fasciculatus_F_contig14505.3258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=294bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14505:3134..3280- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCAGGCATTCTGCAAGATCTTGGAGGAGGGTGGTGAAGTCACTCCTTC
GGGAGAAGACGGCTTGGCCGCCCTCAAGATGGCCATGGCATGCGACAAGT
CCCTTAAGGAGGGCCGCCCAGTCAGCCTCTCCGAGATCACTGCTTAATTG
CAGGCATTCTGCAAGATCTTGGAGGAGGGTGGTGAAGTCACTCCTTCGGG
AGAAGACGGCTTGGCCGCCCTCAAGATGGCCATGGCATGCGACAAGTCCC
TTAAGGAGGGCCGCCCAGTCAGCCTCTCCGAGATCACTGCTTAA
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