mRNA_E-fasciculatus_F_contig1450.3255.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1450.3255.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI) HSP 1 Score: 411 bits (1057), Expect = 9.640e-127 Identity = 214/297 (72.05%), Postives = 223/297 (75.08%), Query Frame = 1
Query: 1 RCEDWPCDDVSTNLEGSCYNDDNFGRRRLSSSSSTFLGECSDNTCCQLIDYTCDSFVDAESGASLCPSGYDAISLGESVXXXXXXXXXXXXXXXXXXXXXDWTCDDVSTNLEGSCYIDDNWERRRLSSSSSTFLGECSDDTCCQLIDYTCDSFVDAETGASLCPSRYRAIANGDSISCGVGVECDEATCCEEDVDEERCEDWACGDVSTNLEGSCY--NYNDDYGEGRRLSSSSSTLLGECSDDTCCQLIDYTCDSFVDAESGASLCPSGFSAIANGGSVSCGIGEECNEATCCDED 885
RCEDW CDDVSTNLEGSCYN + RR+LSSSSST LGECSD+TCCQLIDYTCDSFVDAESGASLCPSGY AIS GESV DW CDDVSTNLEGSC T LGECSDDTCCQLIDYTCDSFV E+GASLCPS YRAIAN +SISCGVGV CDEATCCEEDVDEERCEDW C DVSTNL GSCY Y+D SSS+ + ECSDDTCCQ IDYTCDSFVDA SGASLCPSGFSAIAN SVSCGIGEEC+EATCCDED
Sbjct: 26 RCEDWQCDDVSTNLEGSCYNYNYDDRRKLSSSSSTSLGECSDDTCCQLIDYTCDSFVDAESGASLCPSGYVAISFGESVSCGIGVECDVTPCCEEEARCEDWPCDDVSTNLEGSCDXXXXXXXXXXXXXXXTSLGECSDDTCCQLIDYTCDSFVGTESGASLCPSGYRAIANSESISCGVGVACDEATCCEEDVDEERCEDWPCDDVSTNLGGSCYIYAYSDXXXXXXXXRLSSSSSMAECSDDTCCQPIDYTCDSFVDAASGASLCPSGFSAIANAESVSCGIGEECDEATCCDED 322
BLAST of mRNA_E-fasciculatus_F_contig1450.3255.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE) HSP 1 Score: 132 bits (332), Expect = 4.800e-30 Identity = 127/441 (28.80%), Postives = 159/441 (36.05%), Query Frame = 1
Query: 1 RCEDWPCDDVSTNLEGSCY----NDDNFGRRRLSSSSSTFLGECSDNTCCQLIDYTCDSFVDAESGASLCPSGYDAISLGESVXXXXXXXXXXXXXXXXXXXXXDWTCDDVSTNLEGSCYIDDNWERRRLSSSSSTFLGECSDDTCCQLIDYTCDSFVDAETGASLCPSRYRAIANGDSISCGVGVECDEATCCEEDVD-------------------------------------------------------------------------------------------------------------EERCEDWACGDVSTNLEGSCYNYNDDYGEGRRLSSSSSTLLGECSDDTCCQLIDYTCDSFVDAESGASLCPSGFSAIANGGSVSCGIGEECNEATCCDEDIPRPSPGPTXXXFAPPTPRPIFTEPPLTPAPTR 984
RCEDWPCDDVSTNL GSCY ND + ECSD+TCCQ D + + C S S ++ CD C++ + S+ST Q IDYTCDSFVDAE+GASLCPS + AIAN +++SCGVG ECDEATCC+ DV+ ++ T+ E YTCDS+++ + G +LCP+G S + GG V+CG+ C+++TCC ED P PSP P XXXF TPRPIFTEPPLTPAPTR
Sbjct: 30 RCEDWPCDDVSTNLGGSCYIYAYNDXXXXXXXXXXXXXXXMAECSDDTCCQRERRVS---TDPNTATATCFSSSFGFSARRTLSSEPFFLMVRVTTPAAI-------CD---------CFLPRTTHLPNICGSAST-----------QAIDYTCDSFVDAESGASLCPSGFSAIANAENVSCGVGEECDEATCCKNDVELMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQPPTMAPE-----------YTCDSYLN-DLGDTLCPAGLSPV--GGEVTCGVDGGCDDSTCCVEDTPSPSPAPXXXXFVXXTPRPIFTEPPLTPAPTR 426 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1450.3255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1450.3255.1 >prot_E-fasciculatus_F_contig1450.3255.1 ID=prot_E-fasciculatus_F_contig1450.3255.1|Name=mRNA_E-fasciculatus_F_contig1450.3255.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=365bp RCEDWPCDDVSTNLEGSCYNDDNFGRRRLSSSSSTFLGECSDNTCCQLIDback to top mRNA from alignment at E-fasciculatus_F_contig1450:6884..11063- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1450.3255.1 ID=mRNA_E-fasciculatus_F_contig1450.3255.1|Name=mRNA_E-fasciculatus_F_contig1450.3255.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4180bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1450:6884..11063- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1450:6884..11063- >mRNA_E-fasciculatus_F_contig1450.3255.1 ID=mRNA_E-fasciculatus_F_contig1450.3255.1|Name=mRNA_E-fasciculatus_F_contig1450.3255.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2190bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1450:6884..11063- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |