mRNA_E-fasciculatus_F_contig14499.3250.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14499.3250.1
Unique NamemRNA_E-fasciculatus_F_contig14499.3250.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: A0A6H5KE21_9PHAE (E2F_TDP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE21_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.880e-14
Identity = 35/45 (77.78%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAATP 135
            T +VPDPDEGMPQGERRYQIYLKSP GPIDVYVVSQV       P
Sbjct:  191 TLEVPDPDEGMPQGERRYQIYLKSPSGPIDVYVVSQVDERIEPGP 235          
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: D8LEV2_ECTSI (Transcription factor E2F n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV2_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.400e-13
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAATP 135
            T +VPDPDEGMP GERRYQIYLKSP GPIDVYVVSQV       P
Sbjct:  213 TLEVPDPDEGMPHGERRYQIYLKSPSGPIDVYVVSQVDERIEPGP 257          
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: F0W165_9STRA (Transcription factor putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W165_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.250e-10
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAATP 135
            T +VPDPDEGMP G+RRYQI+LKS  GP+DVY++ Q+     +TP
Sbjct:  235 TLEVPDPDEGMPAGKRRYQIFLKSSDGPVDVYLIRQIPEGDLSTP 279          
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: UPI001E1DE88A (transcription factor E2FA-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DE88A)

HSP 1 Score: 60.8 bits (146), Expect = 1.680e-9
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    7 KVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAA 129
            +VPDPD+GMP GERRYQI+LKS  GPID  +VSQ G   AA
Sbjct:  148 EVPDPDDGMPYGERRYQIFLKSTAGPIDCLLVSQGGEQNAA 188          
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: W4FLR3_9STRA (E2F_TDP domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLR3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.730e-9
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGT---------HTAATPASCM 147
            T +VPDPDEGMP G RR+QI+LKS  GP+DVY+VSQ  T          TAA+ AS +
Sbjct:  299 TLEVPDPDEGMPAGSRRFQIFLKSNEGPVDVYLVSQASTVPDEGVKKEATAASSASLL 356          
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: A0A6G0WWR1_9STRA (E2F_TDP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWR1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.350e-9
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGT 117
            T +VPDPDEGMP G RR+QI+LKS  GP+DVY+VSQ  T
Sbjct:  290 TLEVPDPDEGMPPGSRRFQIFLKSNEGPVDVYLVSQAST 328          
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: A0A024U299_9STRA (E2F_TDP domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U299_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.360e-9
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGT 117
            T +VPDPDEGMP G RR+QI+LKS  GP+DVY+VSQ  T
Sbjct:  300 TLEVPDPDEGMPPGSRRFQIFLKSNEGPVDVYLVSQAST 338          
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: A0A7S3WEN5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WEN5_9SPIT)

HSP 1 Score: 57.8 bits (138), Expect = 2.400e-9
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVS 105
            T +VPDPDEGM QG+RRYQIYLKS  GP++V++VS
Sbjct:   46 TLEVPDPDEGMEQGQRRYQIYLKSQAGPVEVFLVS 80          
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: H3HB83_PHYRM (E2F_CC-MB domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB83_PHYRM)

HSP 1 Score: 58.5 bits (140), Expect = 3.630e-9
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAATPAS 141
            T +VPDPDEGMP G+RR+QI+LKS  GP+DVY+V Q+     A   S
Sbjct:   75 TLEVPDPDEGMPAGKRRFQIFLKSTDGPVDVYLVRQMADEKEAEGTS 121          
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Match: A0A8K1C6W8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6W8_PYTOL)

HSP 1 Score: 59.7 bits (143), Expect = 3.970e-9
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    1 TPKVPDPDEGMPQGERRYQIYLKSPLGPIDVYVVSQVGTHTA 126
            T +VPDPDEGMP G+RRYQI+LKS  GP+DVY+V Q+    A
Sbjct:  213 TLEVPDPDEGMPSGKRRYQIFLKSSDGPVDVYLVRQLAEGEA 254          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14499.3250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE21_9PHAE7.880e-1477.78E2F_TDP domain-containing protein n=1 Tax=Ectocarp... [more]
D8LEV2_ECTSI3.400e-1375.56Transcription factor E2F n=1 Tax=Ectocarpus silicu... [more]
F0W165_9STRA6.250e-1060.00Transcription factor putative n=1 Tax=Albugo laiba... [more]
UPI001E1DE88A1.680e-968.29transcription factor E2FA-like n=1 Tax=Mercenaria ... [more]
W4FLR3_9STRA1.730e-955.17E2F_TDP domain-containing protein n=5 Tax=Aphanomy... [more]
A0A6G0WWR1_9STRA2.350e-969.23E2F_TDP domain-containing protein n=1 Tax=Aphanomy... [more]
A0A024U299_9STRA2.360e-969.23E2F_TDP domain-containing protein n=1 Tax=Aphanomy... [more]
A0A7S3WEN5_9SPIT2.400e-971.43Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
H3HB83_PHYRM3.630e-957.45E2F_CC-MB domain-containing protein n=1 Tax=Phytop... [more]
A0A8K1C6W8_PYTOL3.970e-964.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14499contigE-fasciculatus_F_contig14499:3103..3258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927934.2920215-CDS-E-fasciculatus_F_contig14499:3102..32281622927934.2920215-CDS-E-fasciculatus_F_contig14499:3102..3228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14499 3103..3228 -
1695995757.2982342-CDS-E-fasciculatus_F_contig14499:3102..32281695995757.2982342-CDS-E-fasciculatus_F_contig14499:3102..3228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14499 3103..3228 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927934.3658679-UTR-E-fasciculatus_F_contig14499:3228..32581622927934.3658679-UTR-E-fasciculatus_F_contig14499:3228..3258Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14499 3229..3258 -
1695995757.3087957-UTR-E-fasciculatus_F_contig14499:3228..32581695995757.3087957-UTR-E-fasciculatus_F_contig14499:3228..3258Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14499 3229..3258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14499.3250.1prot_E-fasciculatus_F_contig14499.3250.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14499 3103..3228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14499.3250.1

>prot_E-fasciculatus_F_contig14499.3250.1 ID=prot_E-fasciculatus_F_contig14499.3250.1|Name=mRNA_E-fasciculatus_F_contig14499.3250.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=42bp
MPQGERRYQIYLKSPLGPIDVYVVSQVGTHTAATPASCMVE*
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mRNA from alignment at E-fasciculatus_F_contig14499:3103..3258-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14499.3250.1 ID=mRNA_E-fasciculatus_F_contig14499.3250.1|Name=mRNA_E-fasciculatus_F_contig14499.3250.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=156bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14499:3103..3258- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCCCCAAGGTGCCCGATCCTGACGAGGGCATGCCGCAGGGGGAGCGGCG GTATCAGATTTATCTCAAGAGCCCGTTGGGTCCGATCGACGTCTACGTCG TTAGCCAGGTGGGAACACACACGGCGGCAACACCTGCATCCTGCATGGTA GAATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14499:3103..3258-

>mRNA_E-fasciculatus_F_contig14499.3250.1 ID=mRNA_E-fasciculatus_F_contig14499.3250.1|Name=mRNA_E-fasciculatus_F_contig14499.3250.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=252bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14499:3103..3258- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGCAGGGGGAGCGGCGGTATCAGATTTATCTCAAGAGCCCGTTGGG
TCCGATCGACGTCTACGTCGTTAGCCAGGTGGGAACACACACGGCGGCAA
CACCTGCATCCTGCATGGTAGAATAGATGCCGCAGGGGGAGCGGCGGTAT
CAGATTTATCTCAAGAGCCCGTTGGGTCCGATCGACGTCTACGTCGTTAG
CCAGGTGGGAACACACACGGCGGCAACACCTGCATCCTGCATGGTAGAAT
AG
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