mRNA_E-fasciculatus_F_contig14497.3249.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14497.3249.1
Unique NamemRNA_E-fasciculatus_F_contig14497.3249.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Match: D8LHN2_ECTSI (D-lactate dehydrognease 2, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN2_ECTSI)

HSP 1 Score: 357 bits (917), Expect = 4.890e-124
Identity = 188/204 (92.16%), Postives = 192/204 (94.12%), Query Frame = 1
Query:    1 MRFWSLRRARSQLQKST---GLFSSSSSYASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEVR 603
            MRF SLRRARS+L+KST   GLF  S  YASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLP NT+ VSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMK VVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLE +
Sbjct:    1 MRFLSLRRARSRLRKSTSTTGLFGRS--YASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPSNTDQVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKSVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEKK 202          
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Match: A0A6H5K2K8_9PHAE (FAD-binding PCMH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2K8_9PHAE)

HSP 1 Score: 349 bits (895), Expect = 1.600e-115
Identity = 185/203 (91.13%), Postives = 188/203 (92.61%), Query Frame = 1
Query:    1 MRFWSLRRARSQLQKST---GLFSSSSSYASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV 600
            +RF SLRRA SQL+KST   GLF  S  YASVTDADLDFFRGVVGADHVKTS EDLESFNTDWMKKYRGASPAAVLP NT+ VSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMK VVSFDPL GVLTCEAGCILE LDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV
Sbjct:    8 IRFLSLRRACSQLRKSTNTAGLFGRS--YASVTDADLDFFRGVVGADHVKTSTEDLESFNTDWMKKYRGASPAAVLPSNTDQVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKSVVSFDPLTGVLTCEAGCILETLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV 208          
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Match: A0A7S0QE84_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QE84_9CRYP)

HSP 1 Score: 237 bits (604), Expect = 1.510e-74
Identity = 113/176 (64.20%), Postives = 144/176 (81.82%), Query Frame = 1
Query:   73 SYASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV 600
            S+A++ D D+DFFR ++G   V T  +DLE+FN DWM+KYRG +  A+ P  T+ ++ +L++CNERR+AVVPQGGNTGLVGGSVP       E+VLSTS + R++SFDP++GVL CEAGC+L+ LDA+L  +GFAMPLDLGAKGSCQIGGN+STNAGGLRLLRYGSLHG+VLG+E 
Sbjct:   65 SFATLEDRDVDFFRKILGNSGVITDVDDLENFNVDWMRKYRGHATVALRPRETDQIAAILKYCNERRLAVVPQGGNTGLVGGSVPVRD----EIVLSTSLLNRILSFDPVSGVLVCEAGCVLQALDAFLEARGFAMPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGTVLGIEA 236          
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Match: A0A7S0Y267_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y267_HEMAN)

HSP 1 Score: 229 bits (585), Expect = 1.120e-72
Identity = 122/194 (62.89%), Postives = 146/194 (75.26%), Query Frame = 1
Query:   19 RRARSQLQKSTGLFSSSSSYASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV 600
            RR+ S   + +G+FS       + + DL+FFR VVG   V T  ++LE+FN DWM+KYRG S  A+ P  T+ VS LLR+CNER +AVVPQGGNTGLVGGSV    A   EVVLSTS M ++ SF P +G L C+AGC+LE LD Y+ +QGFAMPLDLGAKGSCQIGGN++TNAGGLRLLRYGSLHGSVLGLEV
Sbjct:    7 RRSASTRVERSGVFSV------LEERDLEFFRSVVGDRGVVTDEDELEAFNVDWMRKYRGHSKVALKPKTTQQVSELLRYCNERMLAVVPQGGNTGLVGGSV----AVHDEVVLSTSLMNKIESFSPESGALVCQAGCVLEALDQYVEKQGFAMPLDLGAKGSCQIGGNVATNAGGLRLLRYGSLHGSVLGLEV 190          
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Match: A0A7S2Z6B2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z6B2_9CHLO)

HSP 1 Score: 232 bits (592), Expect = 7.180e-71
Identity = 119/175 (68.00%), Postives = 136/175 (77.71%), Query Frame = 1
Query:   76 YASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV 600
            YA++T+ DLD FRG+VGA +V TS EDL   N DWM KY GAS  A+ P  TE VSR+++HC+ER +AVVPQGGNTGLVGGSVP       EVV+S +RM  V S DPL+GVL C+AGCIL+NLD  L E G  MPLDLGAKGSC IGGNISTNAGG+R LRYGSLHGSVLGLEV
Sbjct:   88 YATLTEEDLDVFRGIVGAANVLTSEEDLAGHNRDWMGKYEGASKLALRPKTTEEVSRVMKHCHERGLAVVPQGGNTGLVGGSVPV----FDEVVVSMARMDAVRSIDPLSGVLICQAGCILQNLDDQLQEVGLVMPLDLGAKGSCHIGGNISTNAGGIRYLRYGSLHGSVLGLEV 258          
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Match: A0A2P6TGK5_CHLSO (D-2-hydroxyglutarate mitochondrial n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGK5_CHLSO)

HSP 1 Score: 235 bits (599), Expect = 4.670e-70
Identity = 117/189 (61.90%), Postives = 143/189 (75.66%), Query Frame = 1
Query:   34 QLQKSTGLFSSSSSYASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV 600
            QL+++ G+      +A+V DADL FF  ++G   V T P +L+ FN DWM KY GAS  A+ P  TE  + LLRHCNERR+AVVPQGGNTGLVGGSVP       E+V+ST+ M +V+ FD ++G LT +AGCILENLD Y+AE+G+ MPLDLGAKGSC IGGN++TNAGGLRLLRYGSLHGSVLGLE 
Sbjct:   18 QLRRAGGVAERDPRFATVADADLQFFESMLGPAGVVTDPHELQPFNRDWMGKYEGASRVALKPKTTEQAAALLRHCNERRLAVVPQGGNTGLVGGSVPV----FDEIVISTAAMNQVLGFDQVSGALTAQAGCILENLDNYVAERGYCMPLDLGAKGSCHIGGNVATNAGGLRLLRYGSLHGSVLGLEA 202          
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Match: A0A6P8Y9H0_THRPL (D-2-hydroxyglutarate dehydrogenase, mitochondrial-like isoform X1 n=3 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Y9H0_THRPL)

HSP 1 Score: 228 bits (581), Expect = 4.480e-69
Identity = 108/175 (61.71%), Postives = 136/175 (77.71%), Query Frame = 1
Query:   76 YASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV 600
            +AS+TD D++ F G+VG   + T   D+E++N DW+   RG+S   + P  TE VS +L+HCNERR+AV PQGGNTGL GGS P       EVV+STS M +++SFD L+GVLTC+AGC+LE L++YL EQGF MPLDLGAKGSCQIGGN+STNAGGLRL+RYGSLHG+VLG+E 
Sbjct:   43 FASLTDKDINVFEGIVGKTRMLTDVSDVEAYNVDWLHSVRGSSQCVLKPKTTEEVSAILKHCNERRLAVCPQGGNTGLAGGSNPV----FDEVVISTSLMNKIISFDSLSGVLTCQAGCVLEQLESYLLEQGFLMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGTVLGIEA 213          
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Match: Q4LAW2_CAPCH (Putative FAD linked oxidase family protein (Fragment) n=1 Tax=Capsicum chinense TaxID=80379 RepID=Q4LAW2_CAPCH)

HSP 1 Score: 220 bits (560), Expect = 6.880e-69
Identity = 107/177 (60.45%), Postives = 135/177 (76.27%), Query Frame = 1
Query:   70 SSYASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV 600
            S +++++  DL +F+ ++G   V    E L++ NTDWM+KY+G S   + P   E VS++L++CN R +AVVPQGGNTGLVGGSVPA      EV++S S M +++SFD ++ VL CEAGCILENL  +L  QGF MPLDLGAKGSCQIGGN+STNAGGLRLLRYGSLHGSVLGLEV
Sbjct:   38 SDFSTISSEDLSYFKNILGERGVVQDEETLDAVNTDWMRKYKGTSKLMLQPRTAEEVSQILKYCNSRSLAVVPQGGNTGLVGGSVPA----FDEVIVSLSHMSKIISFDKVSSVLVCEAGCILENLITFLDNQGFIMPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEV 210          
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Match: A0A2P6V3S4_9CHLO (D-2-hydroxyglutarate mitochondrial isoform B n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V3S4_9CHLO)

HSP 1 Score: 237 bits (605), Expect = 1.100e-68
Identity = 119/175 (68.00%), Postives = 140/175 (80.00%), Query Frame = 1
Query:   76 YASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV 600
            +A+V DADLDFFR V+G   V T   +L+ FN DWM KYRGAS  A+ P +TE  + +L HCNERR+AVVPQGGNTGLVGGSVP       EVVLST+ M +V+SFDP++G LT +AGCILE LD ++AEQG+ MPLDLGAKGSC IGGN++TNAGGLRLLRYGSLHGSVLGLEV
Sbjct: 1923 FAAVCDADLDFFRSVLGDAGVVTDEHELQPFNQDWMGKYRGASRVALKPHSTEQAAAVLHHCNERRLAVVPQGGNTGLVGGSVPV----FDEVVLSTAAMNKVLSFDPVSGTLTAQAGCILEALDNHVAEQGYCMPLDLGAKGSCHIGGNVATNAGGLRLLRYGSLHGSVLGLEV 2093          
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Match: A0A1Y1IKY2_KLENI (FAD/FMN-containing dehydrogenases n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKY2_KLENI)

HSP 1 Score: 226 bits (577), Expect = 1.890e-68
Identity = 115/176 (65.34%), Postives = 135/176 (76.70%), Query Frame = 1
Query:   73 SYASVTDADLDFFRGVVGADHVKTSPEDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGNTGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLDAYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV 600
            S+A +T  D+ FF+GV+G   V T  + L   NTDWM KY G S   + P  TE VSR+L HC+ERR+AVVPQGGN+GLVGGSVP       EV+L+   M R+VSFD ++G+L CEAGCILE +DAYLAE+GF  PLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHG+VLGLEV
Sbjct:   30 SFAQLTSDDVRFFQGVLGLGGVVTDDDLLAVANTDWMNKYHGKSKLLLRPRTTEQVSRVLAHCHERRLAVVPQGGNSGLVGGSVPL----FDEVILNLGAMDRIVSFDEVSGILVCEAGCILEKVDAYLAERGFVFPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGNVLGLEV 201          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14497.3249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHN2_ECTSI4.890e-12492.16D-lactate dehydrognease 2, putative n=1 Tax=Ectoca... [more]
A0A6H5K2K8_9PHAE1.600e-11591.13FAD-binding PCMH-type domain-containing protein n=... [more]
A0A7S0QE84_9CRYP1.510e-7464.20Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0Y267_HEMAN1.120e-7262.89Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S2Z6B2_9CHLO7.180e-7168.00Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A2P6TGK5_CHLSO4.670e-7061.90D-2-hydroxyglutarate mitochondrial n=1 Tax=Chlorel... [more]
A0A6P8Y9H0_THRPL4.480e-6961.71D-2-hydroxyglutarate dehydrogenase, mitochondrial-... [more]
Q4LAW2_CAPCH6.880e-6960.45Putative FAD linked oxidase family protein (Fragme... [more]
A0A2P6V3S4_9CHLO1.100e-6868.00D-2-hydroxyglutarate mitochondrial isoform B n=2 T... [more]
A0A1Y1IKY2_KLENI1.890e-6865.34FAD/FMN-containing dehydrogenases n=1 Tax=Klebsorm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14497contigE-fasciculatus_F_contig14497:381..1858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.8
Seed ortholog evalue8.7e-97
Seed eggNOG ortholog2880.D8LHN2
Preferred nameD2HGDH
KEGG koko:K18204
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004457,GO:0004458,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006089,GO:0006091,GO:0006103,GO:0006807,GO:0008150,GO:0008152,GO:0009853,GO:0009987,GO:0010035,GO:0010038,GO:0010042,GO:0010043,GO:0015980,GO:0016491,GO:0016614,GO:0016898,GO:0019516,GO:0019538,GO:0019752,GO:0022900,GO:0022904,GO:0031974,GO:0032025,GO:0032787,GO:0036094,GO:0042221,GO:0043094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0047545,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051186,GO:0051990,GO:0055114,GO:0070013,GO:0071704,GO:0071949,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901615
EggNOG free text desc.Dehydrogenase
EggNOG OGsCOG0277@1,KOG1232@2759
EC1.1.99.39
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionFAD-binding, type 2, subdomain 1
Ec32 orthologEc-26_003750.1
Exons3
Model size618
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14497.3249.1prot_E-fasciculatus_F_contig14497.3249.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14497 381..1858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927934.227646-CDS-E-fasciculatus_F_contig14497:380..5751622927934.227646-CDS-E-fasciculatus_F_contig14497:380..575Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14497 381..575 -
1695995757.2653925-CDS-E-fasciculatus_F_contig14497:380..5751695995757.2653925-CDS-E-fasciculatus_F_contig14497:380..575Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14497 381..575 -
1622927934.2414393-CDS-E-fasciculatus_F_contig14497:1078..14541622927934.2414393-CDS-E-fasciculatus_F_contig14497:1078..1454Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14497 1079..1454 -
1695995757.2785087-CDS-E-fasciculatus_F_contig14497:1078..14541695995757.2785087-CDS-E-fasciculatus_F_contig14497:1078..1454Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14497 1079..1454 -
1622927934.2521098-CDS-E-fasciculatus_F_contig14497:1811..18581622927934.2521098-CDS-E-fasciculatus_F_contig14497:1811..1858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14497 1812..1858 -
1695995757.2880988-CDS-E-fasciculatus_F_contig14497:1811..18581695995757.2880988-CDS-E-fasciculatus_F_contig14497:1811..1858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14497 1812..1858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14497.3249.1

>prot_E-fasciculatus_F_contig14497.3249.1 ID=prot_E-fasciculatus_F_contig14497.3249.1|Name=mRNA_E-fasciculatus_F_contig14497.3249.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=206bp
MRFWSLRRARSQLQKSTGLFSSSSSYASVTDADLDFFRGVVGADHVKTSP
EDLESFNTDWMKKYRGASPAAVLPGNTEHVSRLLRHCNERRIAVVPQGGN
TGLVGGSVPAGRAGVGEVVLSTSRMKRVVSFDPLAGVLTCEAGCILENLD
AYLAEQGFAMPLDLGAKGSCQIGGNISTNAGGLRLLRYGSLHGSVLGLEV
RAGYR*
back to top

mRNA from alignment at E-fasciculatus_F_contig14497:381..1858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14497.3249.1 ID=mRNA_E-fasciculatus_F_contig14497.3249.1|Name=mRNA_E-fasciculatus_F_contig14497.3249.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1478bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14497:381..1858- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCTTTTGGTCCCTGCGAAGGGCCCGCTCCCAGTTGCAAAAGAGGTG ATTTTGACTTGATTATAAACAGAGTTTGGTTTTGTCATGAAAAAAAGAGC CGGCCGGCTAGTCAAGGCTAGTGCCAGCCTTCTCTTTGTCTGCCGTGTTG TGTTGTTGTGTTGTTGTTGTGTTCCTCTCGCTCGATCGCTGTCCATTCTG GCGAGCTGGTGCCCCCTCTGCTGTTGTGGTTGCTGTACTCCTTGGTTGAG AAGTGGTTTTACAGATGCTTCCTTTGCGCGCTTACGAAATACTTTAAACC AGCGTGCTGCTGCTGCACCCTCCACGTAACGGTTCCCCGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGTGCACTACCATGCCTACCCGTCCCACCCCCA CCAGCACGGGCCTCTTCAGCAGCAGCAGCAGCTACGCGTCCGTAACCGAC GCCGACCTCGACTTCTTCCGCGGCGTTGTCGGCGCCGACCACGTCAAGAC CTCCCCCGAGGACCTCGAGAGCTTCAACACGGACTGGATGAAGAAGTACC GCGGGGCTTCCCCTGCGGCCGTCCTGCCCGGCAACACCGAGCACGTCTCC CGCTTGCTTCGGCACTGCAACGAGCGGCGCATCGCCGTCGTGCCGCAGGG GGGCAACACGGGCCTCGTCGGAGGGAGCGTGCCCGCCGGGCGCGCGGGCG TCGGGGAGGTGGTGCTGTCGACCTCGAGGATGAAGCGTGTGGTCTCGTTC GACCCGTTGGCCGGGGTCCTCACGTGCGAGGTAGGTTTGTAAGTGGTGGC GGCGGCTGGCGGGCCTTGAACGGTTGCGAACCCACCCCGCACAGCTATGA AATACTTATATGCACGAGGAAGTGAGTGAAAGAACGGGCGAAGAGAGGCC GGGTCCGTCATGTTGCTGCGCTTATGTAGATAGTCACTTCGTCTCTTTGC CTGTCACGGTTCGATTTTGAGCTTGCGAGGAAGCCAGGGTGAAGAGCCCA ACCCGGGGTATGGTCGAGGAGAGAGCCAATGGCGTGGTACAAGTTTGCCT TGGCAATGTACGCGGCCAGACGAGTCAGACGCACGCGACAGGTTGTACGG GTCAACCGTTTTGAGTTTGAGTTGGTGGGTGAGGAGGCGCCCTGCATCAC CCTCGTCGATACCGCCGCTAGTGCATGGCTCCTCGATCGAGAGTGTACTG CCTCTCCCGCGGCGCACTCCACCCACCATCCAGTCTCCGCACACGTATCC CCTTGCCCCCCCAATCATTGGTGCACAACACAGGCTGGGTGCATCTTAGA AAATCTGGACGCCTACCTGGCGGAGCAAGGGTTCGCGATGCCGCTCGACC TGGGGGCCAAAGGCTCCTGCCAGATCGGCGGCAACATCTCCACCAACGCG GGCGGCCTCCGCCTTCTACGGTACGGGTCCCTGCACGGCTCGGTCCTCGG TCTCGAGGTGCGCGCAGGTTATCGTTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14497:381..1858-

>mRNA_E-fasciculatus_F_contig14497.3249.1 ID=mRNA_E-fasciculatus_F_contig14497.3249.1|Name=mRNA_E-fasciculatus_F_contig14497.3249.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1236bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14497:381..1858- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCTTTTGGTCCCTGCGAAGGGCCCGCTCCCAGTTGCAAAAGAGATG
CGCTTTTGGTCCCTGCGAAGGGCCCGCTCCCAGTTGCAAAAGAGCACGGG
CCTCTTCAGCAGCAGCAGCAGCTACGCGTCCGTAACCGACGCCGACCTCG
ACTTCTTCCGCGGCGTTGTCGGCGCCGACCACGTCAAGACCTCCCCCGAG
GACCTCGAGAGCTTCAACACGGACTGGATGAAGAAGTACCGCGGGGCTTC
CCCTGCGGCCGTCCTGCCCGGCAACACCGAGCACGTCTCCCGCTTGCTTC
GGCACTGCAACGAGCGGCGCATCGCCGTCGTGCCGCAGGGGGGCAACACG
GGCCTCGTCGGAGGGAGCGTGCCCGCCGGGCGCGCGGGCGTCGGGGAGGT
GGTGCTGTCGACCTCGAGGATGAAGCGTGTGGTCTCGTTCGACCCGTTGG
CCGGGGTCCTCACGTGCGAGCACGGGCCTCTTCAGCAGCAGCAGCAGCTA
CGCGTCCGTAACCGACGCCGACCTCGACTTCTTCCGCGGCGTTGTCGGCG
CCGACCACGTCAAGACCTCCCCCGAGGACCTCGAGAGCTTCAACACGGAC
TGGATGAAGAAGTACCGCGGGGCTTCCCCTGCGGCCGTCCTGCCCGGCAA
CACCGAGCACGTCTCCCGCTTGCTTCGGCACTGCAACGAGCGGCGCATCG
CCGTCGTGCCGCAGGGGGGCAACACGGGCCTCGTCGGAGGGAGCGTGCCC
GCCGGGCGCGCGGGCGTCGGGGAGGTGGTGCTGTCGACCTCGAGGATGAA
GCGTGTGGTCTCGTTCGACCCGTTGGCCGGGGTCCTCACGTGCGAGGCTG
GGTGCATCTTAGAAAATCTGGACGCCTACCTGGCGGAGCAAGGGTTCGCG
ATGCCGCTCGACCTGGGGGCCAAAGGCTCCTGCCAGATCGGCGGCAACAT
CTCCACCAACGCGGGCGGCCTCCGCCTTCTACGGTACGGGTCCCTGCACG
GCTCGGTCCTCGGTCTCGAGGTGCGCGCAGGTTATCGTTGAGCTGGGTGC
ATCTTAGAAAATCTGGACGCCTACCTGGCGGAGCAAGGGTTCGCGATGCC
GCTCGACCTGGGGGCCAAAGGCTCCTGCCAGATCGGCGGCAACATCTCCA
CCAACGCGGGCGGCCTCCGCCTTCTACGGTACGGGTCCCTGCACGGCTCG
GTCCTCGGTCTCGAGGTGCGCGCAGGTTATCGTTGA
back to top