mRNA_E-fasciculatus_F_contig1449.3247.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1449.3247.1
Unique NamemRNA_E-fasciculatus_F_contig1449.3247.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1449.3247.1 vs. uniprot
Match: D7FM78_ECTSI (M20_dimer domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM78_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 3.970e-58
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    1 MAENVSSSQRGAGYEDVRNDEAVKLAMDLIDVESLSGHEQPMAVVLKEWLETRDWIVKLQEVEPQKTTVDGKVRHNLYARRPGIPATRTEGPRVLFNSHI 300
            MA NVS SQRGAGYEDVR+DEAVKLAMDLIDVESLSGHEQPMAVVLKEWLE RDW+V+LQEVEPQK+TVDGKVRHNLYARRPGIPATRTEGPRVLFNSHI
Sbjct:    1 MAGNVSGSQRGAGYEDVRSDEAVKLAMDLIDVESLSGHEQPMAVVLKEWLEKRDWVVQLQEVEPQKSTVDGKVRHNLYARRPGIPATRTEGPRVLFNSHI 100
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1449.3247.1 vs. uniprot
Match: A0A8J7U6M1_9BACT (M20/M25/M40 family metallo-hydrolase n=1 Tax=Acanthopleuribacter pedis TaxID=442870 RepID=A0A8J7U6M1_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 2.850e-9
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:   49 VRNDEAVKLAMDLIDVESLSGHEQPMAVVLKEWLETRDWIVKLQEVEPQKTTVDGKVRHNLYARRPGIPATRTEGPRVLFNSHI 300
            ++ND  V LAM++I+ ES+SG+E+PMA  L+++LE R W V  QEV P         R N+ ARR        + PR++FNSHI
Sbjct:    1 MKND-VVALAMEMINTESISGNEEPMARFLRDYLEPRGWQVTFQEVAPG--------RPNVLARR------NAKQPRLVFNSHI 69
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1449.3247.1 vs. uniprot
Match: A0A1V6TGG9_9EURO (M20_dimer domain-containing protein n=1 Tax=Penicillium steckii TaxID=303698 RepID=A0A1V6TGG9_9EURO)

HSP 1 Score: 59.7 bits (143), Expect = 2.900e-8
Identity = 32/91 (35.16%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   49 VRNDEAVKLAMDLIDVESLSGHEQPMAVVLKEWLETRDWIVKLQEVEPQKTTVDG-------KVRHNLYARRPGIPATRTEGPRVLFNSHI 300
            +  D  + L  DL+++ES+SG+E  + + + E+LE++++ V  QEVEP K   DG       K R+N++A     P+T+   P +L  SHI
Sbjct:   54 ISKDPLLSLHRDLVEIESISGNEHDIGIFVAEYLESKNFTVIKQEVEPVKKDQDGDDDSKPSKQRYNIFA----YPSTQKTPPSILLTSHI 140
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1449.3247.1 vs. uniprot
Match: A0A7S4DHD3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHD3_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 4.760e-7
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:   13 VSSSQRGAGYEDVRNDEAVKLAMDLIDVESLSGHEQPMAVVLKEWLETRDWIVKLQEVEPQKTTVDGKV-RHNLYARRPGIPATRTEGP-RVLFNSH 297
            +S    G   ED+   E  +L + ++ ++S +GHE  +   LKE+LE R W V LQEV       +G   R NL A RPG      EGP R+LFN+H
Sbjct:   84 ISDLDEGWDQEDLEK-EVTELTVQMMKIDSTTGHEGRVVWFLKEYLEERGWDVLLQEVGGDLCRDEGAPPRANLLATRPG------EGPPRLLFNTH 173
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1449.3247.1 vs. uniprot
Match: A0A8J2EQP4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2EQP4_9DINO)

HSP 1 Score: 54.3 bits (129), Expect = 2.420e-6
Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 1 
Query:   61 EAVKLAMDLIDVESLSGHEQPMAVVLKEWLETRDWIVKLQEVEPQKTTVDGKVRHNLYARRPGIPATRTEGPRVLFNSHI 300
            + V LA  LID++S+SG E PMA  L  W +   + + LQ VEP+     G  R N+ A   G   TR     ++FN+HI
Sbjct:  566 DVVDLARALIDIDSVSGTEVPMANALSTWFQAHGYDLDLQSVEPETGKPGGGSRFNVLAWPKG---TRVADLPIIFNTHI 642
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1449.3247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM78_ECTSI3.970e-5893.00M20_dimer domain-containing protein n=2 Tax=Ectoca... [more]
A0A8J7U6M1_9BACT2.850e-944.05M20/M25/M40 family metallo-hydrolase n=1 Tax=Acant... [more]
A0A1V6TGG9_9EURO2.900e-835.16M20_dimer domain-containing protein n=1 Tax=Penici... [more]
A0A7S4DHD3_HETAK4.760e-739.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2EQP4_9DINO2.420e-638.75Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1449contigE-fasciculatus_F_contig1449:17718..18017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue1.5e-46
Seed eggNOG ortholog2880.D7FM78
KEGG rclassRC00064,RC00300,RC01151
KEGG koko:K01438,ko:K08963
KEGG ReactionR00669,R04420,R09107
KEGG Pathwayko00220,ko00270,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00270,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028,M00034,M00845
GOsGO:0003674,GO:0003824,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006751,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009636,GO:0009987,GO:0016787,GO:0019538,GO:0034641,GO:0042219,GO:0042221,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0070011,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990748
EggNOG free text desc.aminoacylase activity
EggNOG OGsCOG0624@1,KOG2275@2759
EC3.5.1.16,5.3.1.23
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase M20, dimerisation domain
Ec32 orthologEc-16_004770.1
Exons1
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927934.1499496-CDS-E-fasciculatus_F_contig1449:17717..180171622927934.1499496-CDS-E-fasciculatus_F_contig1449:17717..18017Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1449 17718..18017 +
1695995757.241927-CDS-E-fasciculatus_F_contig1449:17717..180171695995757.241927-CDS-E-fasciculatus_F_contig1449:17717..18017Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1449 17718..18017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1449.3247.1prot_E-fasciculatus_F_contig1449.3247.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1449 17718..18017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1449.3247.1

>prot_E-fasciculatus_F_contig1449.3247.1 ID=prot_E-fasciculatus_F_contig1449.3247.1|Name=mRNA_E-fasciculatus_F_contig1449.3247.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
MAENVSSSQRGAGYEDVRNDEAVKLAMDLIDVESLSGHEQPMAVVLKEWL
ETRDWIVKLQEVEPQKTTVDGKVRHNLYARRPGIPATRTEGPRVLFNSHI
back to top

mRNA from alignment at E-fasciculatus_F_contig1449:17718..18017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1449.3247.1 ID=mRNA_E-fasciculatus_F_contig1449.3247.1|Name=mRNA_E-fasciculatus_F_contig1449.3247.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1449:17718..18017+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGAAAACGTCAGCAGCAGCCAGCGAGGAGCCGGGTACGAGGACGT
ACGCAACGATGAGGCGGTCAAGCTCGCGATGGATCTCATCGACGTCGAGA
GCCTCAGCGGGCACGAGCAGCCCATGGCCGTCGTGCTCAAGGAGTGGCTG
GAGACGAGAGACTGGATCGTGAAGCTGCAAGAGGTGGAGCCGCAGAAAAC
AACGGTAGATGGCAAGGTCCGGCACAACCTCTACGCCCGGCGGCCTGGCA
TCCCGGCCACAAGGACCGAAGGGCCTCGCGTGCTCTTCAACAGCCACATC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1449:17718..18017+

>mRNA_E-fasciculatus_F_contig1449.3247.1 ID=mRNA_E-fasciculatus_F_contig1449.3247.1|Name=mRNA_E-fasciculatus_F_contig1449.3247.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1449:17718..18017+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGAAAACGTCAGCAGCAGCCAGCGAGGAGCCGGGTACGAGGACGT
ACGCAACGATGAGGCGGTCAAGCTCGCGATGGATCTCATCGACGTCGAGA
GCCTCAGCGGGCACGAGCAGCCCATGGCCGTCGTGCTCAAGGAGTGGCTG
GAGACGAGAGACTGGATCGTGAAGCTGCAAGAGGTGGAGCCGCAGAAAAC
AACGGTAGATGGCAAGGTCCGGCACAACCTCTACGCCCGGCGGCCTGGCA
TCCCGGCCACAAGGACCGAAGGGCCTCGCGTGCTCTTCAACAGCCACATC
ATGGCAGAAAACGTCAGCAGCAGCCAGCGAGGAGCCGGGTACGAGGACGT
ACGCAACGATGAGGCGGTCAAGCTCGCGATGGATCTCATCGACGTCGAGA
GCCTCAGCGGGCACGAGCAGCCCATGGCCGTCGTGCTCAAGGAGTGGCTG
GAGACGAGAGACTGGATCGTGAAGCTGCAAGAGGTGGAGCCGCAGAAAAC
AACGGTAGATGGCAAGGTCCGGCACAACCTCTACGCCCGGCGGCCTGGCA
TCCCGGCCACAAGGACCGAAGGGCCTCGCGTGCTCTTCAACAGCCACATC
back to top