mRNA_E-fasciculatus_F_contig1449.3245.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1449.3245.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE) HSP 1 Score: 362 bits (929), Expect = 5.160e-108 Identity = 299/533 (56.10%), Postives = 317/533 (59.47%), Query Frame = 1
Query: 151 EDAGFAPAVAFQTVAAEGVSGLLCAQLQALVQTALRPLARFTAELGEMDTLSKACRRKRESENHYARKVNELNGKLEAERREDKRAVLQEKAARNIQKLAAARTGRKQASDELSRLVVSSHQSSQDCFNPVFASICQFQEASYSHGHLLASMLLRVVRSSLGTTALPMATAGALNAHTTAPPSPLPEGRGEGVLKWRDDGSDAGDSGAGVAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPEETQEEKRGDSCSPRRGTPRSAEXXXXXXXXXXXXXDVEGVADRAXXXXXXXXXXXXXXXXXXVAADGAAGVADA--------SXXXXXXXXXXXXXXNDTANXTAAVXXXXXXXXXXXXXXXXXXXXXXXXXXDNETPEQGEDRPDAPAGAKTGAEVTXXXXXXXXXXXXXXVTMPQARPTPPQGPFLEAHLPWGKRRRMSGNLRLKISGGGRVARRV-------------VFCAAEGRELVVYDAESDSNAGLPPRARYLVMGVRAVKTGPNAAELEV 1686
+DAGFAPAVAFQTVAAEGVSGLLCAQLQALVQTALRPLARFTAELGEMDTL KAC+RKRESE+HYA+KVNELN KLEAERREDKRAVLQEKAARNI+KLAA QAS+ELSRLVVSSHQSS DCF+PVFASICQFQEASY SS G T GA+ A T A SPL R +L+ V +G EK G S GT + V GV R DG+ GV XXXXXXXX X XXXXXXXXXXXXXXXXXXXXXXXX D+ETPE+GEDRP PAGAKTGA+ T+PQARPTPPQGPFLEAHLPWGKRRRMSGNLRLKISGGGRVARRV VFCAAEGRELVVYDAESDSNAGLPPRARYLVMGVRA+KTGPNAAELEV
Sbjct: 31 QDAGFAPAVAFQTVAAEGVSGLLCAQLQALVQTALRPLARFTAELGEMDTLFKACQRKRESEHHYAKKVNELNSKLEAERREDKRAVLQEKAARNIRKLAAXXXXXXQASEELSRLVVSSHQSSHDCFDPVFASICQFQEASYR-------------ASSSGETT------GAMPA-TPAQTSPLAPPR---LLRL-------------VPLGATAVVT---------------------------------------EKTG---SRTLGTVEAV---------------VPGVLGRRNR-------------------DGSGGVLALHEGERLVRQKKVVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDDETPERGEDRPVVPAGAKTGADAAPPGAGVDWGGSGGVTTVPQARPTPPQGPFLEAHLPWGKRRRMSGNLRLKISGGGRVARRVATSGGREWGVWGGVFCAAEGRELVVYDAESDSNAGLPPRARYLVMGVRALKTGPNAAELEV 451
BLAST of mRNA_E-fasciculatus_F_contig1449.3245.1 vs. uniprot
Match: D8LRB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB3_ECTSI) HSP 1 Score: 327 bits (837), Expect = 1.800e-106 Identity = 177/192 (92.19%), Postives = 185/192 (96.35%), Query Frame = 1
Query: 10 MSRLQTEHHTQSLREVHERLVSFVQCHTQLASSTIGLADAILDFYSPEDAGFAPAVAFQTVAAEGVSGLLCAQLQALVQTALRPLARFTAELGEMDTLSKACRRKRESENHYARKVNELNGKLEAERREDKRAVLQEKAARNIQKLAAARTGRKQASDELSRLVVSSHQSSQDCFNPVFASICQFQEASYSH 585
MSRLQTE HTQSLREVHERLVSFVQCHTQLASSTIGLAD+ILDFYSPEDAGFAPAVAFQTVAAEGVSGLLCAQLQALVQT LRPLARFTAELGEMDTLSKAC+RKRESE+HYA+KVNELNGKLEAERREDKRAVLQEKAARNI+KLAAART RKQAS+ELSRLVV SHQSS DC +PVFASICQFQEASY +
Sbjct: 1 MSRLQTEGHTQSLREVHERLVSFVQCHTQLASSTIGLADSILDFYSPEDAGFAPAVAFQTVAAEGVSGLLCAQLQALVQTTLRPLARFTAELGEMDTLSKACQRKRESEHHYAKKVNELNGKLEAERREDKRAVLQEKAARNIRKLAAARTVRKQASEELSRLVVISHQSSHDCLDPVFASICQFQEASYRY 192
BLAST of mRNA_E-fasciculatus_F_contig1449.3245.1 vs. uniprot
Match: A0A6H5JB03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB03_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.180e-19 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1
Query: 10 MSRLQTEHHTQSLREVHERLVSFVQCHTQLASSTIGLADAILDFYSPE 153
MSRLQTE HTQSLREVHERLVSFVQCHTQLASSTIGLAD+ILDFYSPE
Sbjct: 1 MSRLQTEGHTQSLREVHERLVSFVQCHTQLASSTIGLADSILDFYSPE 48 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1449.3245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1449.3245.1 >prot_E-fasciculatus_F_contig1449.3245.1 ID=prot_E-fasciculatus_F_contig1449.3245.1|Name=mRNA_E-fasciculatus_F_contig1449.3245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=559bp MSRLQTEHHTQSLREVHERLVSFVQCHTQLASSTIGLADAILDFYSPEDAback to top mRNA from alignment at E-fasciculatus_F_contig1449:338..6490- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1449.3245.1 ID=mRNA_E-fasciculatus_F_contig1449.3245.1|Name=mRNA_E-fasciculatus_F_contig1449.3245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6153bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1449:338..6490- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1449:338..6490- >mRNA_E-fasciculatus_F_contig1449.3245.1 ID=mRNA_E-fasciculatus_F_contig1449.3245.1|Name=mRNA_E-fasciculatus_F_contig1449.3245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3354bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1449:338..6490- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |