mRNA_E-fasciculatus_F_contig14481.3243.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14481.3243.1
Unique NamemRNA_E-fasciculatus_F_contig14481.3243.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Match: D8LQU8_ECTSI (Tryptophan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU8_ECTSI)

HSP 1 Score: 382 bits (981), Expect = 4.690e-127
Identity = 189/207 (91.30%), Postives = 195/207 (94.20%), Query Frame = 1 
Query:    1 MATDLDAAEVGEQGLATLQPVPPVPVRRGVNPRLAKVFRRQDGEPQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNNVTLTECLDIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASATDSFVYC 621
            MA+DL+AA VGEQGL TL PVPP PV R VNPRLA+VFRRQD E QEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQN +TLTECL+IVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKC EYHLSF+PLVTP TTDDRIPFIAS TDSFVYC
Sbjct:    1 MASDLEAAAVGEQGLGTLLPVPPFPVTRSVNPRLAEVFRRQDDETQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNGITLTECLEIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKCQEYHLSFIPLVTPTTTDDRIPFIASTTDSFVYC 207
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Match: A0A6H5K496_9PHAE (Tryptophan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K496_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 7.730e-92
Identity = 153/224 (68.30%), Postives = 169/224 (75.45%), Query Frame = 1 
Query:    1 MATDLDAAEVGEQGLATLQPVPPVPVR--RGVNPRLAKVFRRQDGEPQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNNVTLTECLDIV----RDARAKGLTIAVVLMGYLNPFLAYGLNKLVHD-----------AHRNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASATDSFVYC 621
            M +DL+AA VGE       PVPP PV   R VNPRLAKVFRRQDGE QEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPF DPQA GPTIQAT QV +   +      + +    RDARAKGLTI VVLMGYLNPFLAYGLNKL H               + VDGFL +DL PDDAH+F SKC+++HLSF+PLVTP TTD+R+PF+ASATDSFVYC
Sbjct:    1 MVSDLEAAAVGE-------PVPPFPVTSTRSVNPRLAKVFRRQDGETQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFGDPQAGGPTIQATKQVHVSGGLAERRHPNGMSRNSRDARAKGLTIVVVLMGYLNPFLAYGLNKLAHKLIGTDRLPRPIVTSDSVDGFLAIDLPPDDAHNFSSKCYKHHLSFIPLVTPTTTDNRLPFVASATDSFVYC 217
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BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 4.380e-84
Identity = 134/183 (73.22%), Postives = 153/183 (83.61%), Query Frame = 1 
Query:   73 PVRRGVNPRLAKVFRRQDGEPQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNNVTLTECLDIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASATDSFVYC 621
            P  +  +PRLAKVF     E ++AAFI YLTAGYPK+ DTVELLLALQEGG DV+ELGVPF+DPQADG TIQATNQVAL+N VTL +CLD VRDARAKGLT  VVLMGYLNPFLAYGL+KL+ DA   G DGF+VVDLLPD+AHDF++KC    LSFVPLV+P TTDDR+P++ASA DSFVYC
Sbjct:   54 PTSKSASPRLAKVFG-DVAEDKQAAFIPYLTAGYPKRDDTVELLLALQEGGADVIELGVPFTDPQADGATIQATNQVALKNKVTLGDCLDYVRDARAKGLTAPVVLMGYLNPFLAYGLDKLMKDAREAGADGFVVVDLLPDEAHDFVTKCRASELSFVPLVSPTTTDDRMPYVASAADSFVYC 235
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BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Match: A0A835YTN0_9STRA (Tryptophan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN0_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.420e-75
Identity = 124/195 (63.59%), Postives = 153/195 (78.46%), Query Frame = 1 
Query:   37 QGLATLQPVPPVPVRRGVNPRLAKVFRRQDGEPQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNNVTLTECLDIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASATDSFVYC 621
            +GL+ +   PP  V  GVN RL+ VF+  + E  +AAFI YLTAGYPK  DTV+LLL LQEGG DV+ELGVPF+DPQADG TIQ TNQVAL+N + L++CL  V++AR+KGLT  VVLMGYLNPFLAYGL+KL+ D    G DGF+VVDLLPD+A DF++KC    LSF+PLV+P TTDDR+P++ SA D+FVYC
Sbjct:   60 RGLSMVSAEPPAKV--GVNTRLSNVFKGVE-ETGKAAFIPYLTAGYPKADDTVDLLLGLQEGGADVIELGVPFTDPQADGATIQRTNQVALKNKIRLSDCLRYVKEARSKGLTTPVVLMGYLNPFLAYGLDKLMADVKEAGADGFIVVDLLPDEAGDFVTKCRANQLSFIPLVSPTTTDDRLPYVTSAADTFVYC 251
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BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Match: A0A7S2UWZ9_9STRA (Tryptophan synthase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWZ9_9STRA)

HSP 1 Score: 224 bits (571), Expect = 2.470e-67
Identity = 111/183 (60.66%), Postives = 141/183 (77.05%), Query Frame = 1 
Query:   79 RRGVNPRLAKVFR--RQDGEPQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNNVTLTECLDIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASATDSFVYC 621
            RR  + RL +VF+  R+ G+   AAF+ YLTAGYPK  DTV+LLLAL++GG DV+ELGVPF+DPQADG TIQ TN++AL N VT   CL++V+ AR KGLT  V+LMGY NPFLA+GL+KL+ D    GVDGF+VVDL P++   F++ C E+ LSFVPLV+P TTDDRI F++ A DSF+YC
Sbjct:   51 RRAGSARLREVFQTTRESGK---AAFVGYLTAGYPKMEDTVDLLLALEQGGADVIELGVPFTDPQADGATIQHTNEIALANKVTPDLCLEMVKKAREKGLTAPVILMGYYNPFLAHGLDKLMEDCKEAGVDGFIVVDLPPEEGGLFVNTCREHDLSFVPLVSPTTTDDRISFLSDAADSFLYC 230
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Match: A0A7S4DAV4_HETAK (Tryptophan synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAV4_HETAK)

HSP 1 Score: 218 bits (556), Expect = 1.930e-63
Identity = 108/184 (58.70%), Postives = 137/184 (74.46%), Query Frame = 1 
Query:   76 VRRGV--NPRLAKVFRRQDGEPQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNNVTLTECLDIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASATDSFVYC 621
            VR GV  + RL   F +   E +++A ++YLTAGYP   DTVEL+LALQ GG DV+ELGVPF+DPQADG TIQ TN++AL N +T  + L+ VR AR +GLTI VVLMGY NPFL YGL+KL+ +    GVDGF++VDL P+   + I+KC EY LSFVPL++P TTD+RI F+A A DSF+YC
Sbjct:   42 VRGGVVESNRLLPAFEKARAE-KKSALVSYLTAGYPAMEDTVELMLALQAGGTDVIELGVPFTDPQADGATIQHTNEIALANKITTKDSLEFVRQARERGLTIPVVLMGYYNPFLRYGLDKLMQECKEVGVDGFIIVDLPPEYGEEIINKCREYGLSFVPLISPTTTDERIAFLADAADSFLYC 224
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Match: A0A7S1U774_9STRA (Tryptophan synthase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U774_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.060e-60
Identity = 100/175 (57.14%), Postives = 132/175 (75.43%), Query Frame = 1 
Query:   97 RLAKVFRRQDGEPQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNNVTLTECLDIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASATDSFVYC 621
            RL K F  +     +AA + Y+TAGYP   DTVELLL++QEGGVDV+ELGVPF+DPQADG TIQ +NQVAL+N + + +C++ V  ARAKGLT+ VVLMGY NPFLAYG +KL+  A   G+DG ++VDL P++  +FISKC+   L+FVPL+TP +TD+RI  ++ A  SF+YC
Sbjct:   52 RLEKAFG-ESTTSGKAALVGYITAGYPTADDTVELLLSMQEGGVDVIELGVPFTDPQADGATIQGSNQVALKNGIGMQDCINFVEAARAKGLTVPVVLMGYFNPFLAYGADKLIGAAAEAGIDGLIIVDLPPEEDEEFISKCNNAGLAFVPLITPTSTDERIAQLSDAAGSFLYC 225
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Match: A0A7C3AJ19_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3AJ19_9CHLR)

HSP 1 Score: 196 bits (497), Expect = 4.250e-59
Identity = 95/175 (54.29%), Postives = 118/175 (67.43%), Query Frame = 1 
Query:   97 RLAKVFRRQDGEPQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNNVTLTECLDIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASATDSFVYC 621
            R A     ++G P   AF+AY+TAGYP + DTV +LLALQ GG D+VELGVPFSDP ADG TIQ  N+VAL   VT+ EC     DARA G  + ++ MGY NP LAYG  +    A   GVDGF+VVDL P++A DF++ C  Y   F+PLV P T D+RIP +AS TD+F+YC
Sbjct:    8 RSAIELANREGRP---AFVAYVTAGYPTRADTVPILLALQAGGADIVELGVPFSDPLADGATIQRANEVALAQGVTIEECFRFAEDARAAGFRLPLIFMGYYNPVLAYGERRTAARARDAGVDGFIVVDLPPEEAADFLAACRAYGRRFIPLVAPTTKDERIPLLASVTDAFLYC 179
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Match: A0A2A9HG15_CHLB2 (Tryptophan synthase alpha chain n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A2A9HG15_CHLB2)

HSP 1 Score: 192 bits (487), Expect = 8.310e-58
Identity = 96/175 (54.86%), Postives = 120/175 (68.57%), Query Frame = 1 
Query:   97 RLAKVFRRQDGEPQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNNVTLTECLDIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASATDSFVYC 621
            RL + F R   E     F+ Y+TAGYP++ DTV +LLA+QEGG DV+ELGVPF+DP ADG TIQ  NQVALQ  VTL +C   VR AR +GLT+ V+LMGY NP LA G  +   +A   G DG++VVDL P++A  F+  C  + LSFVPLV P T D+RI  IAS  D+F+YC
Sbjct:    4 RLRETFARAR-ETGRKLFVGYITAGYPRRADTVPILLAMQEGGADVIELGVPFTDPLADGATIQHANQVALQQGVTLADCFAFVRAAREQGLTVPVLLMGYYNPILARGEARACAEAAAAGADGWIVVDLPPEEAGSFLQACRAHDLSFVPLVAPTTRDERITRIASVADAFLYC 177
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Match: A0A2H5ZCG9_9BACT (Tryptophan synthase alpha chain n=1 Tax=bacterium HR29 TaxID=2035424 RepID=A0A2H5ZCG9_9BACT)

HSP 1 Score: 192 bits (488), Expect = 9.680e-58
Identity = 95/175 (54.29%), Postives = 114/175 (65.14%), Query Frame = 1 
Query:   97 RLAKVFRRQDGEPQEAAFIAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQVALQNNVTLTECLDIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAHRNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASATDSFVYC 621
            RL        GE + A FIAYLTAGYP + DTV LLLALQ GG D+VELGVPFSDP ADG TIQ  N+VAL   VT+ EC     +AR  G  + ++ MGY NP LAYG  +    A  +GVDGF+VVDL P++A DF+  C  Y   F+PL  P T D RIP +AS TD+F+YC
Sbjct:    6 RLRSAIEAAKGEGRPA-FIAYLTAGYPTRADTVPLLLALQAGGADIVELGVPFSDPLADGTTIQRANEVALAQGVTIEECFRFAEEARTAGFRLPLIFMGYYNPVLAYGERRTAARARDSGVDGFIVVDLPPEEAGDFLGACRAYGRRFIPLAAPTTPDARIPLLASVTDAFLYC 179
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14481.3243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQU8_ECTSI4.690e-12791.30Tryptophan synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5K496_9PHAE7.730e-9268.30Tryptophan synthase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LLB1_ECTSI4.380e-8473.22Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YTN0_9STRA1.420e-7563.59Tryptophan synthase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2UWZ9_9STRA2.470e-6760.66Tryptophan synthase (Fragment) n=1 Tax=Fibrocapsa ... [more]
A0A7S4DAV4_HETAK1.930e-6358.70Tryptophan synthase n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S1U774_9STRA2.060e-6057.14Tryptophan synthase n=1 Tax=Phaeomonas parva TaxID... [more]
A0A7C3AJ19_9CHLR4.250e-5954.29Tryptophan synthase alpha chain n=1 Tax=Chloroflex... [more]
A0A2A9HG15_CHLB28.310e-5854.86Tryptophan synthase alpha chain n=2 Tax=Chloroflex... [more]
A0A2H5ZCG9_9BACT9.680e-5854.29Tryptophan synthase alpha chain n=1 Tax=bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14481contigE-fasciculatus_F_contig14481:973..3144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue5.7e-104
Seed eggNOG ortholog2880.D8LQU8
Preferred nameTRP5
KEGG rclassRC00209,RC00210,RC00700,RC00701,RC02868
KEGG koko:K01694,ko:K01695,ko:K01696,ko:K10882,ko:K13222
KEGG ReactionR00674,R02340,R02722
KEGG Pathwayko00260,ko00400,ko00402,ko01100,ko01110,ko01130,ko01230,ko03440,ko03460,map00260,map00400,map00402,map01100,map01110,map01130,map01230,map03440,map03460
KEGG ModuleM00023
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009606,GO:0009607,GO:0009617,GO:0009628,GO:0009629,GO:0009630,GO:0009651,GO:0009683,GO:0009684,GO:0009719,GO:0009725,GO:0009735,GO:0009850,GO:0009851,GO:0009941,GO:0009987,GO:0010033,GO:0010817,GO:0016020,GO:0016043,GO:0016053,GO:0016829,GO:0016830,GO:0016832,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0019904,GO:0031967,GO:0031975,GO:0032787,GO:0033036,GO:0033037,GO:0033554,GO:0033984,GO:0034641,GO:0034754,GO:0042221,GO:0042401,GO:0042430,GO:0042435,GO:0042445,GO:0042446,GO:0042545,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0046219,GO:0046394,GO:0046483,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0065007,GO:0065008,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0098542,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.tryptophan synthase activity
EggNOG OGsCOG0133@1,COG0159@1,KOG1395@2759,KOG4175@2759
EC4.1.2.8,4.2.1.20
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size621
Cds size621
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14481.3243.1prot_E-fasciculatus_F_contig14481.3243.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14481 973..3144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927933.4813805-CDS-E-fasciculatus_F_contig14481:972..11361622927933.4813805-CDS-E-fasciculatus_F_contig14481:972..1136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 973..1136 -
1695995756.9451404-CDS-E-fasciculatus_F_contig14481:972..11361695995756.9451404-CDS-E-fasciculatus_F_contig14481:972..1136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 973..1136 -
1622927933.6653001-CDS-E-fasciculatus_F_contig14481:1543..17001622927933.6653001-CDS-E-fasciculatus_F_contig14481:1543..1700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 1544..1700 -
1695995756.9655213-CDS-E-fasciculatus_F_contig14481:1543..17001695995756.9655213-CDS-E-fasciculatus_F_contig14481:1543..1700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 1544..1700 -
1622927933.6824346-CDS-E-fasciculatus_F_contig14481:2135..22191622927933.6824346-CDS-E-fasciculatus_F_contig14481:2135..2219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 2136..2219 -
1695995756.9755569-CDS-E-fasciculatus_F_contig14481:2135..22191695995756.9755569-CDS-E-fasciculatus_F_contig14481:2135..2219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 2136..2219 -
1622927933.6946392-CDS-E-fasciculatus_F_contig14481:2591..27241622927933.6946392-CDS-E-fasciculatus_F_contig14481:2591..2724Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 2592..2724 -
1695995756.985549-CDS-E-fasciculatus_F_contig14481:2591..27241695995756.985549-CDS-E-fasciculatus_F_contig14481:2591..2724Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 2592..2724 -
1622927933.711833-CDS-E-fasciculatus_F_contig14481:3061..31441622927933.711833-CDS-E-fasciculatus_F_contig14481:3061..3144Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 3062..3144 -
1695995756.9952407-CDS-E-fasciculatus_F_contig14481:3061..31441695995756.9952407-CDS-E-fasciculatus_F_contig14481:3061..3144Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 3062..3144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14481.3243.1

>prot_E-fasciculatus_F_contig14481.3243.1 ID=prot_E-fasciculatus_F_contig14481.3243.1|Name=mRNA_E-fasciculatus_F_contig14481.3243.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=207bp
MATDLDAAEVGEQGLATLQPVPPVPVRRGVNPRLAKVFRRQDGEPQEAAF
IAYLTAGYPKKTDTVELLLALQEGGVDVVELGVPFSDPQADGPTIQATNQ
VALQNNVTLTECLDIVRDARAKGLTIAVVLMGYLNPFLAYGLNKLVHDAH
RNGVDGFLVVDLLPDDAHDFISKCHEYHLSFVPLVTPATTDDRIPFIASA
TDSFVYC
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mRNA from alignment at E-fasciculatus_F_contig14481:973..3144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14481.3243.1 ID=mRNA_E-fasciculatus_F_contig14481.3243.1|Name=mRNA_E-fasciculatus_F_contig14481.3243.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2172bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14481:973..3144- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGACAGATCTAGATGCAGCCGAAGTCGGCGAGCAAGGCTTGGCCAC
GCTCCAGCCTGTGCCGCCCGTCCCCGTAAGGAGGTGCGAGTATCTGATAG
TACGCTCGTCGTCTTCCACGTCTTGAGCGTGGCTGGTTTTGAGCCGACTA
CGAACGGGGAGACGACCGTGGGTAGAACGGCATGCTCTATTTTCCACGCA
GAAAATATCCCAGAATATGGCCTAAGCAGCCGAGGGATCACGGTAGTAGC
CCGAGGTACCCAAACGAAGTTTGTTAACAAGCTAATCCCGAAGCTTGTGC
TTTTGGGTTCTGACCAACGAGTCAAGTACATCGTGCTCTTATCCCGTTTA
CGACTGGCAAATATTTTCCTCGATCATGACTACGTGTTTGAAATGGCGGC
GGCGGTTACCTATGTACCAGAGGCGTCAATCCTCGGCTGGCCAAAGTGTT
CCGGAGACAAGATGGCGAACCCCAAGAGGCGGCCTTCATCGCGTACCTAA
CGGCTGGGTACCCCAAAAAAACAGACACAGTGGAGCTCTTGTTGGCACTA
CAGGTAGGAGGGCCCGTGACGAAGGAGGTGCTTTTGGAAGGGGCCGGCTG
CCGTGGTGCCAGTCGTGCCACTTCAGTATCCTTTATCGTACTGTAGCTCG
ATCAGCAGCTGATCTCGACGCTCGATGCACACGGCACATTGCGGTTGTTT
ATGTGCCCCCGGCTTAAGGAGACGTATTGGCAGGCGGCATTGGTGGGAGG
GTTCGACACGAGACGACCATCGCGCGCTTTCGTCAACGATGTTCACTGCG
TATGCAGGCTGGGATATCTACGACGTAGATAAAAACCTCCACCCACCGAA
CTGCGGCCACATTCTTGTCTTCGACGGCAGCATACCACGGTTAACTCCCC
TTATTCTCCTCGTGTTGGCCTGTAGGAGGGGGGCGTTGACGTCGTCGAGC
TCGGAGTCCCATTCAGCGACCCTCAAGCAGACGGGCCCACGATTCAAGCC
ACTAACCAGGTGCGGTGCAATATTGTCGCTCCCTTCGCTTCACGACATGG
TGTCTGGGACTTGGCACCACCTAGCGGTCGGTGATTATTTCCTTCGCGGG
GAGGTTTCAACTCACGTTCACGTGAAAACAGTGGGGAAGCATTTTGCTGC
AGCGTGTTTGCTTCTATGGGACTGGTATTTCTCGTGTTGTAGGACAAACT
GCAGGGTTCCACCCCTTCAGTGGTTCAAGGCGGGAGGTGTTCCTCGTCTT
GTAGAACGAAATTCGGGGTTCTACCGTTAAAACGTGACACGCTGCTTCCG
CTAAAGGCGGGAGGTCGATCTTGAAACGAGACACAACATGCACAATGACG
GTAAACACGATACATCTAGTGTAGTTGATTCCCGGAAAGCCTCTCAGGGT
TGGTTAGCTCGATGTGCCTCGTTTACTTTGTTGTACTCTGACAGGTGGCC
TTGCAGAACAACGTCACGCTCACGGAATGCCTCGACATCGTCAGGGATGC
TCGCGCGAAGGGCTTGACGATCGCCGTGGTTCTCATGGGATATCTCAACC
CGTTCCTAGCTTATGGCTTAAACAAACTCGTCCACGATGCTCATCGGAAC
GGTGAGACGAGGAGCGGAGAGGGGTGGGAGTGTCTGCTAGGATTTTTGTC
TCGCGCTTCGACCAATACTTATGAATTTACAACCTTTGTCAAGGGCGACT
ACTTTTGCGCGGTACGTGTTCTCCTATCATCCAACCATGTCCGTTCAAAT
GGGTACAAGCGCCACTGTCTACCACCAAGTTTTTCACGTAGCACAGCACC
CACTGTGGGCGCCTTTGTTCTGCCCGTCGTGGGTTGCGTGCAACCCTCGT
TACAGCATTGTTCTTTCGGTTGCTGATCAACGGCTCCCCCGGAAGGTGGC
CACATGATTCCGGAAACCGTACTTGAAAATCAGTGTCAATATCGCTGCGG
CGCACCAATCCACGTCTTCCCCTCGACTTTTGGTTTTTGCTATTCTTGTC
CAAACCAGGCGTTGACGGCTTCTTGGTGGTTGACCTGCTTCCCGACGACG
CGCACGACTTCATCTCCAAGTGCCATGAGTATCATCTGTCGTTCGTCCCC
CTCGTTACACCCGCGACCACCGATGATCGTATCCCTTTCATCGCTTCCGC
CACCGACTCCTTCGTCTACTGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14481:973..3144-

>mRNA_E-fasciculatus_F_contig14481.3243.1 ID=mRNA_E-fasciculatus_F_contig14481.3243.1|Name=mRNA_E-fasciculatus_F_contig14481.3243.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1242bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14481:973..3144- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGACAGATCTAGATGCAGCCGAAGTCGGCGAGCAAGGCTTGGCCAC
GCTCCAGCCTGTGCCGCCCGTCCCCGTAAGGAGATGGCGACAGATCTAGA
TGCAGCCGAAGTCGGCGAGCAAGGCTTGGCCACGCTCCAGCCTGTGCCGC
CCGTCCCCGTAAGGAGAGGCGTCAATCCTCGGCTGGCCAAAGTGTTCCGG
AGACAAGATGGCGAACCCCAAGAGGCGGCCTTCATCGCGTACCTAACGGC
TGGGTACCCCAAAAAAACAGACACAGTGGAGCTCTTGTTGGCACTACAGA
GGCGTCAATCCTCGGCTGGCCAAAGTGTTCCGGAGACAAGATGGCGAACC
CCAAGAGGCGGCCTTCATCGCGTACCTAACGGCTGGGTACCCCAAAAAAA
CAGACACAGTGGAGCTCTTGTTGGCACTACAGGAGGGGGGCGTTGACGTC
GTCGAGCTCGGAGTCCCATTCAGCGACCCTCAAGCAGACGGGCCCACGAT
TCAAGCCACTAACCAGGAGGGGGGCGTTGACGTCGTCGAGCTCGGAGTCC
CATTCAGCGACCCTCAAGCAGACGGGCCCACGATTCAAGCCACTAACCAG
GTGGCCTTGCAGAACAACGTCACGCTCACGGAATGCCTCGACATCGTCAG
GGATGCTCGCGCGAAGGGCTTGACGATCGCCGTGGTTCTCATGGGATATC
TCAACCCGTTCCTAGCTTATGGCTTAAACAAACTCGTCCACGATGCTCAT
CGGAACGGTGGCCTTGCAGAACAACGTCACGCTCACGGAATGCCTCGACA
TCGTCAGGGATGCTCGCGCGAAGGGCTTGACGATCGCCGTGGTTCTCATG
GGATATCTCAACCCGTTCCTAGCTTATGGCTTAAACAAACTCGTCCACGA
TGCTCATCGGAACGGCGTTGACGGCTTCTTGGTGGTTGACCTGCTTCCCG
ACGACGCGCACGACTTCATCTCCAAGTGCCATGAGTATCATCTGTCGTTC
GTCCCCCTCGTTACACCCGCGACCACCGATGATCGTATCCCTTTCATCGC
TTCCGCCACCGACTCCTTCGTCTACTGCGCGTTGACGGCTTCTTGGTGGT
TGACCTGCTTCCCGACGACGCGCACGACTTCATCTCCAAGTGCCATGAGT
ATCATCTGTCGTTCGTCCCCCTCGTTACACCCGCGACCACCGATGATCGT
ATCCCTTTCATCGCTTCCGCCACCGACTCCTTCGTCTACTGC
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