mRNA_E-fasciculatus_F_contig1448.3241.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1448.3241.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE) HSP 1 Score: 318 bits (814), Expect = 2.440e-88 Identity = 318/1014 (31.36%), Postives = 478/1014 (47.14%), Query Frame = 2
Query: 107 GLQNLLEKTKAGRFTLPVASLRPTSAGRPQRQSGVDDIYSSIKTNGWLSS-TMTVCLVGEVP-EGGL-TQDSAQDRTFNMLNGNHRLVALQKIDEEAGTSTS--VACDVHHSMDPEVERLVASYLNSATELLVKTTLSDRIAWYKVWYDEMQATSRAKAPLTPNAVANRLQKKLLDAGLPGNSLPTIKQFMRAIEALKPRGLAALIDVTHLPGREKGHPDLKDGGLMYKRVTHKALLRPEFAKFTDVEQEVYVFRLASGSVTG--VMTDEQFKTLDAMVIDISQCMSDLETHFPRANWTDSFKQLANKKRNYEESSKYKIHLNGRAKAVEDYMKKLPIGMPPVALYVDFLRTQPY------------PPFLAAMKGSETCPNDMQTYYDDFSALKTERNDDAEAA--EGRFKAKVEANEKKAVQAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVTIDDDTPTTGEGTATEGEVTLGAKAR--TPSSVVPPATGKDNNADGSAEATVQTISGHKRKLAEDEAVKKTSETARPIMAKMVTLDILDPSM---DSSTDVLHRPGQPFMMAFVNIAADPAVVSSGQGQQDRLVSALCFLSNNLHDRGTIVIALQDW-EFERTRLKAVFKLAGLTLEDSPVVSLYLGGKSGRV---SKAQKWMYPSQGSVTLLAHKSTNIICNGGGARSKADVSARPSRARTTPPRTPELDYIGAVVSDSHPPAGTLLAASVGDLLIKRFSDVGDPILVTTAEGDKELSRLVLDKGRTLIALVPDPAKAVAESKRLDVLSANAAKTGMWSKMLSGPVVTVGAGVLPASVPSSNV--APHVSVAVAEAGERESHGAHDEVTPERKIADNDADFHGLEIRDSKIHGKGLFAKRNLSTGGRDPLPLPLVGSFEVHNSEQERMEAEKDGMPRFLVSSN---LSPFLSGSEVARPGAALYLVPHPASPLYYLNSSIGKADCENYEPKVVFKSSRDTKGDIKKLPSNATNCVTFEVSKPVEKGTELLAFY 3043
G+ LL K G + + L TS GR QRQ+G+ + I+++G+ S VCLV +P E L T +A D +++GNHR+ ALQ+IDEE ++ ++ VH M ER+VA+ N + +VKT L D + WY+ +Q + +T + + ++K + + T+K+++ + P GL AL D+++LPGRE HPDL L YKRVT K + R +F +QE YV+RLA G++T + DEQ KTLD+ I+Q + +E+ PRA W++ FK+ K S+Y HL G VE Y K LP M +++ L +P+ P + A KG + + DF DA + +G+ K XXXXXXXX XXXXXXXXXXXXXXX T T +G + + AK + P+ + P+T N+ E + + K+ + I+DP + ST+ L M+AF+N+A D +++ + RLV AL ++ L DRG++ IA++ F + K AGL LE PV S+YL +GR SK +K Y Q + L+AHK+ + ++ S + PPR +L+ +G ++S HP A T LA S+ D L+ RF+ GD +LV+ E D L+ LVL GR L ALV DPAKAV+ +++ A A G W K L+ V +G VLPA PS N+ A V + G E + A A GLEIRD+ G GL+ ++ ++ +P+ G +E+ S+Q E DG PR++V + + G A G L L P+ LYY+N+ EN E + +F + + L ++A N ++F ++ PV GTELL ++
Sbjct: 14 GISKLLAKFYLGSHRVSIRGLELTSIGRAQRQAGIVALKKHIESDGFDESYAPIVCLVNPLPQEQSLGTVLAAGDIKLRVIDGNHRVAALQQIDEETKPTSPRVISVRVHQPMPQATERMVAAGCNRISSNVVKTLLVDEVVWYRSVIHALQEQHQGSTAMTNDQILKAIKKDFANQSQKAPANQTLKKWIGIALNITPYGLEALRDLSYLPGREPNHPDLTS--LDYKRVTLKLVERTKFQGMNKWQQEAYVYRLAKGAITTNKQLNDEQCKTLDSTAETIAQEIERVESIIPRAEWSEGFKRGMRKVMIGGLQSRYYGHLIGLQTNVEAYKKTLPEKMEVSKDHINMLLREPHASTLLQDDPEMKPKWEAYAKGKKDIEQTSVSDKADFVQKGKAPAADAGSGSKQGKXKGPTXXXXXXXXXXXXXXXXXXXXSAGPSSDPXXXXXXXXXXXXXXXXXXXXASTNTGDKGNMEKEVPVVPAKRKRAAPAPTIAPSTSTAND-----------------------------ERSAKLEKKVAQVQIVDPLSSVWNVSTNPLLEDDGSIMLAFLNVAGDRSILDDSADGKVRLVRALTEIAGTLDDRGSLAIAMESTVSFNYKHMTDSLKEAGLALEAFPVTSVYLNKLAGRTPTDSKQRK--YTRQTASVLVAHKT-------------GEHTSHASGPQFDPPRISQLEAVGIIISQKHPSA-TFLAPSMADHLLNRFTSAGDKVLVSAFE-DNNLASLVLTSGRRLFALVGDPAKAVSVGRQVKSALATAMTAG-WFKALANAGVPLGGSVLPAGFPSHNMSQASQVDIENIRHGYDEDDDGSGPGGWNLEFAKRTAAEFGLEIRDA-TKGGGLWTIQD-----QEIMPMFGQGQYELLTSDQLLAAVENDGKPRYVVCGTELLAALVVDGQYDAGSGLLLVLRLDPSCFLYYMNACDAGDSKENIERRDLFGTKSPNQETAPGLLADAENGLSFSMTSPVTAGTELLHYF 972 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1448.3241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1448.3241.1 >prot_E-fasciculatus_F_contig1448.3241.1 ID=prot_E-fasciculatus_F_contig1448.3241.1|Name=mRNA_E-fasciculatus_F_contig1448.3241.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1006bp MPTSTPAAVSGNGGLQNLLEKTKAGRFTLPVASLRPTSAGRPQRQSGVDDback to top mRNA from alignment at E-fasciculatus_F_contig1448:9240..17478+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1448.3241.1 ID=mRNA_E-fasciculatus_F_contig1448.3241.1|Name=mRNA_E-fasciculatus_F_contig1448.3241.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=8239bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1448:9240..17478+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1448:9240..17478+ >mRNA_E-fasciculatus_F_contig1448.3241.1 ID=mRNA_E-fasciculatus_F_contig1448.3241.1|Name=mRNA_E-fasciculatus_F_contig1448.3241.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=6036bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1448:9240..17478+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |