mRNA_E-fasciculatus_F_contig14479.3240.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14479.3240.1
Unique NamemRNA_E-fasciculatus_F_contig14479.3240.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14479.3240.1 vs. uniprot
Match: D7FXK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK9_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 4.180e-90
Identity = 197/285 (69.12%), Postives = 209/285 (73.33%), Query Frame = 2 
Query:  176 LLQSGPPQSTENAAQLESAAAGVSGE-EGPPGTATTTS-----------------EGQGEMVMPSPAADVTTTPPEEAHGEMSPSAQLVFGNXXXXXXXXXSSECVLSPVSAVSGGAWGAPRDPPAVDGRSPGASETAEVDMMDFLQEAGQQRLRDEAREEHGTEAMTALGTPVSPAGYGTRFAGTPPIHSTDVGPDNNVDSASXXXXXXXXXXXXXXXXGGDSQLSAMVEKDEDAVKDGLQRILHIRRTAQESVAAAAAADAAKANASVAEEDGSNFRATLPAA 976
            L +   P  TENAAQLESAAAGVSGE E PPGTA                     + +GE++MPSPA DV       AH EMSPSAQLVFGNXXXXXXXX  SECVLSPVSAVSGGAWGAPRDPPAVDG SPG SETAEVDMMDFLQE GQQRLRDEAREEH TEAMTA+GTPVS AG  T FA TP  H T++GPDNNV S S                GGDS+LSAMVEKDEDAVKDGLQRILHIR+TAQESVAA AAADAAKAN SV  E+G +FRATLPAA
Sbjct:  190 LRRVSEPLQTENAAQLESAAAGVSGEDEAPPGTAXXXXXXXXXXXXXXXXXXXXPKERGEIMMPSPAEDVXXXXXXXAHEEMSPSAQLVFGNXXXXXXXX--SECVLSPVSAVSGGAWGAPRDPPAVDGGSPGGSETAEVDMMDFLQEVGQQRLRDEAREEHATEAMTAVGTPVSAAGSVTGFARTPAGHPTEIGPDNNVVSGSSLQQQASVVPRPEGSAGGDSELSAMVEKDEDAVKDGLQRILHIRQTAQESVAADAAADAAKANDSVPGENGGDFRATLPAA 472
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BLAST of mRNA_E-fasciculatus_F_contig14479.3240.1 vs. uniprot
Match: A0A6H5JVW4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW4_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 3.240e-72
Identity = 178/293 (60.75%), Postives = 184/293 (62.80%), Query Frame = 2 
Query:  185 SGPPQSTENAAQLESAAAGVSGEEGPPGTATTTSEGQ---------------------------GEMVMPSPAADVTTTPPEEAHGEMSPSAQLVFGNXXXXXXXXXSSECVLSPVSAVSGGAWGAPRDPPAVDGRSPGASETAEVDMMDFLQEAGQQRLRDEAREEHGTEAMTALGTPVSPAGYGTRFAGTPPIHSTDVGPDNNVDSASXXXXXXXXXXXXXXXXGGDSQLSAMVEKDEDAVKDGLQRILHIRRTAQESVAAAAAADAAKANASVAEEDGSNFRATLPAAGT 982
            SGP Q TEN AQLESAAAGVSGEE          EG                            GE++MPSPA           H EMSPSAQLVFGNXXXXXXXX  SECVLSPVSAVSGGAWGAPRDPPAVDGRSPG SETAEVDMMDFLQE GQQRLR+EAREEH TEAMTA+GTPVS AG  T FA TP  H  DVGPDNNV S S                    Q  A          DGLQRILHIRRTAQESVAA AAADAAKAN SV  ++G  FRA LPAA T
Sbjct:  148 SGPLQ-TENVAQLESAAAGVSGEE----------EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEIMMPSPAEXXXXXXXXXXHEEMSPSAQLVFGNXXXXXXXX--SECVLSPVSAVSGGAWGAPRDPPAVDGRSPGGSETAEVDMMDFLQEVGQQRLREEAREEHATEAMTAVGTPVSAAGSVTGFARTPARHPMDVGPDNNVVSGSL-------------------QQQA----------DGLQRILHIRRTAQESVAADAAADAAKANDSVPRDNGGGFRANLPAART 398
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14479.3240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXK9_ECTSI4.180e-9069.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVW4_9PHAE3.240e-7260.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14479contigE-fasciculatus_F_contig14479:1071..3149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-28_002100.1
Exons4
Model size983
Cds size681
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14479.3240.1prot_E-fasciculatus_F_contig14479.3240.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14479 1372..3149 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927933.2007172-UTR-E-fasciculatus_F_contig14479:1070..13711622927933.2007172-UTR-E-fasciculatus_F_contig14479:1070..1371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14479 1071..1371 +
1695995756.728768-UTR-E-fasciculatus_F_contig14479:1070..13711695995756.728768-UTR-E-fasciculatus_F_contig14479:1070..1371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14479 1071..1371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927933.2126577-CDS-E-fasciculatus_F_contig14479:1371..16741622927933.2126577-CDS-E-fasciculatus_F_contig14479:1371..1674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14479 1372..1674 +
1695995756.7368166-CDS-E-fasciculatus_F_contig14479:1371..16741695995756.7368166-CDS-E-fasciculatus_F_contig14479:1371..1674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14479 1372..1674 +
1622927933.222204-CDS-E-fasciculatus_F_contig14479:1996..21431622927933.222204-CDS-E-fasciculatus_F_contig14479:1996..2143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14479 1997..2143 +
1695995756.7549326-CDS-E-fasciculatus_F_contig14479:1996..21431695995756.7549326-CDS-E-fasciculatus_F_contig14479:1996..2143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14479 1997..2143 +
1622927933.231733-CDS-E-fasciculatus_F_contig14479:2481..25651622927933.231733-CDS-E-fasciculatus_F_contig14479:2481..2565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14479 2482..2565 +
1695995756.767061-CDS-E-fasciculatus_F_contig14479:2481..25651695995756.767061-CDS-E-fasciculatus_F_contig14479:2481..2565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14479 2482..2565 +
1622927933.242721-CDS-E-fasciculatus_F_contig14479:3002..31491622927933.242721-CDS-E-fasciculatus_F_contig14479:3002..3149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14479 3003..3149 +
1695995756.7839425-CDS-E-fasciculatus_F_contig14479:3002..31491695995756.7839425-CDS-E-fasciculatus_F_contig14479:3002..3149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14479 3003..3149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14479.3240.1

>prot_E-fasciculatus_F_contig14479.3240.1 ID=prot_E-fasciculatus_F_contig14479.3240.1|Name=mRNA_E-fasciculatus_F_contig14479.3240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=227bp
MVMPSPAADVTTTPPEEAHGEMSPSAQLVFGNGNGGGGGGGSSECVLSPV
SAVSGGAWGAPRDPPAVDGRSPGASETAEVDMMDFLQEAGQQRLRDEARE
EHGTEAMTALGTPVSPAGYGTRFAGTPPIHSTDVGPDNNVDSASSSQQQA
SVVPPPEDSAGGDSQLSAMVEKDEDAVKDGLQRILHIRRTAQESVAAAAA
ADAAKANASVAEEDGSNFRATLPAAGT
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mRNA from alignment at E-fasciculatus_F_contig14479:1071..3149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14479.3240.1 ID=mRNA_E-fasciculatus_F_contig14479.3240.1|Name=mRNA_E-fasciculatus_F_contig14479.3240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2079bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14479:1071..3149+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTTGATCGTTTTGCCTGTCTGCGTGCGGAGCTGCCGCCGCAACAAGAGG
TTCCCAGGCGGAAGAGAATAAATGCGGGGGAACTCGGGTCTCGCTCGCAA
CAGTAAGTCTCTGAATGTCCTACGGACGTGCGGTCAACCGCTAAGGCATG
AGTACACACCTCCCCCCTCGGCTAACTTTTGCAGAGCGGGCCCCCACAGA
GTACCGAAAACGCGGCACAGCTTGAGAGTGCCGCTGCTGGTGTCTCGGGG
GAAGAAGGACCGCCAGGGACGGCGACGACGACATCGGAAGGGCAAGGGGA
GATGGTGATGCCGTCGCCCGCAGCGGACGTGACAACGACCCCGCCAGAGG
AGGCTCACGGAGAGATGTCCCCGTCCGCCCAGTTGGTGTTCGGCAACGGT
AACGGCGGCGGCGGCGGCGGCGGGAGCAGCGAGTGCGTGCTGAGCCCGGT
GTCGGCGGTCTCCGGCGGGGCGTGGGGGGCCCCGCGGGATCCTCCCGCCG
TTGATGGGAGGTCCCCCGGGGCTTCCGAGACCGCGGAGGTGGACATGATG
GACTTCTTGCAGGAGGCCGGGCAGCAGCGGCTGAGGGACGAGGCCCGGGA
AGAGGTGGGCTGGTGCAGTTTGTGTGGCTGCTATTGTAGTGTTTTTAGCT
TCAGCAGCGCTGATCGATCGCGCTACTGTAGCCGGCTGGCAGATGAAATG
ACGCCTGTCTTGGAGTGTGTTTCATGTGGAAAAGTCTTTTTAGGGTCCTG
ATCTGGGGCCCTGTGCGGTGGGGGTTATCTGGGAGGCGAGACTGTTGTAT
TTGAGTGTGTTATGAAATAGTATCGACCGCGCTAAATCGGTTGACCAGGG
GTGACGTGCCTAATGTTTTTCTGCACACCCCTTGTGTGCTGCACCCACCC
GTGTGTACGGTTGGGGGGCTCCGCAGCATGGCACGGAGGCGATGACAGCG
TTGGGGACGCCGGTTTCGCCGGCAGGGTATGGCACCAGGTTCGCCGGCAC
TCCTCCGATACATTCGACGGACGTCGGACCAGACAACAACGTTGACTCAG
CTTCTTCTTCACAACAGCAAGCGGTGAGCACAAGTACAAACATTATTTTT
CTCGTGTGTGTTCTTCCAATCGACGGTGAGAATCACGGCGCGGAGAATAT
TCCCCGGGGCGAAGTGGTCTTATTTGTCAAGATGCATGTTTTTTCGGAAC
ACTTGTTCTTGTTTTACTTCTCTCCTTGGCGGTGCGGTCACGAACGTTCG
GCCAGCTACTGCTGTACGTGCACACCCGGGTGTACTTGAGGGGTAGAAGC
CGACTGTCACCAACCACCACTGCTCACACCCGCTTCTGCTCTCTGCCTCC
GCGCTGCTGCGTGTGCGTGCGTGTTTTCCCGCGTGATTTGTCTCCTCTGC
TCGCGTCGAAGAGCGTCGTACCGCCGCCGGAGGATTCCGCGGGAGGGGAC
AGCCAACTGTCGGCTATGGTGGAGAAAGACGAGGACGCTGTGAAGGTGTG
TATCTACCTCCTCCCCAAAGCCAAACACTGGTAGAAGAATTACAGAAGTT
TGGTTTATTTTCGCCCGTTTTTTGTACGTATTGTTTTCGAGTCACAGTGA
GTTGCGATCGCTGCGTGTGTGTGGGGAGCTGGCGGGGGAGAGGGGGGTCA
AGCGAGGCAGAGGTCCAACGGCAACCGCACAAAACCCAGGAGCTCGGAGA
AAAACGACACAAGAACGGGTAGTCTTTCGGTGTTTGTACTTGTATTTTTT
CTTTAAAAAACGACACAAGCCCGAGACATGAAGAAATGGTCAATTCTTAT
CGTATCGATGCAGATGGAAATTTCGATAGTCGAGAAGTAGAAACCGAGGC
ATTATGCTATTTAGCTACACAACTGGTGTATTTTTGTTGACGCGCATGAA
GCGATCGGTGTTTGGCTCCCGGATCAAAACAGGATGGCCTGCAAAGGATC
CTGCACATACGACGAACGGCGCAGGAATCAGTAGCCGCCGCCGCCGCTGC
CGACGCCGCGAAAGCCAACGCTTCCGTAGCTGAAGAAGATGGCAGCAATT
TCAGGGCCACCCTACCTGCCGCAGGGACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14479:1071..3149+

>mRNA_E-fasciculatus_F_contig14479.3240.1 ID=mRNA_E-fasciculatus_F_contig14479.3240.1|Name=mRNA_E-fasciculatus_F_contig14479.3240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1362bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14479:1071..3149+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGATGCCGTCGCCCGCAGCGGACGTGACAACGACCCCGCCAGAGGA
GGCTCACGGAGAGATGTCCCCGTCCGCCCAGTTGGTGTTCGGCAACGGTA
ACGGCGGCGGCGGCGGCGGCGGGAGCAGCGAGTGCGTGCTGAGCCCGGTG
TCGGCGGTCTCCGGCGGGGCGTGGGGGGCCCCGCGGGATCCTCCCGCCGT
TGATGGGAGGTCCCCCGGGGCTTCCGAGACCGCGGAGGTGGACATGATGG
ACTTCTTGCAGGAGGCCGGGCAGCAGCGGCTGAGGGACGAGGCCCGGGAA
GAGATGGTGATGCCGTCGCCCGCAGCGGACGTGACAACGACCCCGCCAGA
GGAGGCTCACGGAGAGATGTCCCCGTCCGCCCAGTTGGTGTTCGGCAACG
GTAACGGCGGCGGCGGCGGCGGCGGGAGCAGCGAGTGCGTGCTGAGCCCG
GTGTCGGCGGTCTCCGGCGGGGCGTGGGGGGCCCCGCGGGATCCTCCCGC
CGTTGATGGGAGGTCCCCCGGGGCTTCCGAGACCGCGGAGGTGGACATGA
TGGACTTCTTGCAGGAGGCCGGGCAGCAGCGGCTGAGGGACGAGGCCCGG
GAAGAGCATGGCACGGAGGCGATGACAGCGTTGGGGACGCCGGTTTCGCC
GGCAGGGTATGGCACCAGGTTCGCCGGCACTCCTCCGATACATTCGACGG
ACGTCGGACCAGACAACAACGTTGACTCAGCTTCTTCTTCACAACAGCAA
GCGCATGGCACGGAGGCGATGACAGCGTTGGGGACGCCGGTTTCGCCGGC
AGGGTATGGCACCAGGTTCGCCGGCACTCCTCCGATACATTCGACGGACG
TCGGACCAGACAACAACGTTGACTCAGCTTCTTCTTCACAACAGCAAGCG
AGCGTCGTACCGCCGCCGGAGGATTCCGCGGGAGGGGACAGCCAACTGTC
GGCTATGGTGGAGAAAGACGAGGACGCTGTGAAGAGCGTCGTACCGCCGC
CGGAGGATTCCGCGGGAGGGGACAGCCAACTGTCGGCTATGGTGGAGAAA
GACGAGGACGCTGTGAAGGATGGCCTGCAAAGGATCCTGCACATACGACG
AACGGCGCAGGAATCAGTAGCCGCCGCCGCCGCTGCCGACGCCGCGAAAG
CCAACGCTTCCGTAGCTGAAGAAGATGGCAGCAATTTCAGGGCCACCCTA
CCTGCCGCAGGGACGGATGGCCTGCAAAGGATCCTGCACATACGACGAAC
GGCGCAGGAATCAGTAGCCGCCGCCGCCGCTGCCGACGCCGCGAAAGCCA
ACGCTTCCGTAGCTGAAGAAGATGGCAGCAATTTCAGGGCCACCCTACCT
GCCGCAGGGACG
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