mRNA_E-fasciculatus_F_contig14476.3239.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: D8LN34_ECTSI (FAD dependent oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN34_ECTSI) HSP 1 Score: 377 bits (969), Expect = 2.720e-131 Identity = 193/209 (92.34%), Postives = 197/209 (94.26%), Query Frame = 1
Query: 1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYT 627
VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGR +ALY YC ERG+PHR CGKL+VAS ESQLPALRELHERAKACGVGDVRLLG EAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGA+AL EGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGS PDSFPEAFFAKGNYFRY
Sbjct: 34 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGR---EALYRYCGERGLPHRHCGKLVVASSESQLPALRELHERAKACGVGDVRLLGAEEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAEALPEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSIPDSFPEAFFAKGNYFRYA 239
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A6H5JKE6_9PHAE (DAO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE6_9PHAE) HSP 1 Score: 384 bits (985), Expect = 3.480e-126 Identity = 197/213 (92.49%), Postives = 202/213 (94.84%), Query Frame = 1
Query: 1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREK---KALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRRE+ +ALY YC E+GVPHRRCGKL+VAS ESQLPALRELHERAKACGVGDVRLLG AEA EMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVH A+ALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGS PDSFPEAFFAKGNYFRY G
Sbjct: 5 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREEFAAEALYRYCGEKGVPHRRCGKLVVASSESQLPALRELHERAKACGVGDVRLLGAAEAREMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHWAEALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSIPDSFPEAFFAKGNYFRYAG 217
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A1C6QSR3_9BURK (L-2-hydroxyglutarate oxidase LhgO n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A1C6QSR3_9BURK) HSP 1 Score: 224 bits (572), Expect = 2.730e-69 Identity = 123/210 (58.57%), Postives = 146/210 (69.52%), Query Frame = 1
Query: 1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
V+V E E A+G GT+SRNSEVIHAG+YY GSLKARLCV+G KK LY Y ER VPHRRCGKLIVA+ E+Q+ L + +A A GV D+ LL EA MEP + C AL SPSTGIVDSHA LSLQGD E AG VV+L++ V A+ G +LV A+G LRC +VVN AGL+A LARR G +S P+AF+AKGNYF G
Sbjct: 29 VIVLEAEGAIGTGTSSRNSEVIHAGIYYPKGSLKARLCVEG---KKLLYDYARERSVPHRRCGKLIVATSETQVEQLTGIMAKAAANGVDDMVLLSGEEARAMEPQLACTAALLSPSTGIVDSHAFMLSLQGDLEHAGGVVALKSGVASARCEGGGIVLVTADGTHLRCASVVNAAGLAAPALARRFEGLPSESLPQAFYAKGNYFTLAG 235
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: UPI001CE456CB (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Xenophilus sp. Marseille-Q4582 TaxID=2866600 RepID=UPI001CE456CB) HSP 1 Score: 224 bits (570), Expect = 5.940e-69 Identity = 122/210 (58.10%), Postives = 150/210 (71.43%), Query Frame = 1
Query: 1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
VLV E E A+G GT+SRNSEVIHAG+YY GSLKARLCVQGR + LY Y + RGVPHRRCGKLIVA+ ++QL AL+ + +A A GV D+ L+ A+A MEP + C AL SPSTGI+DSHAL LSLQGD E AG +++LR+ V A+ EG +L A+G + CRTVVN AGL A LARR +G P+ P A +AKGNYF +G
Sbjct: 29 VLVLESEGAIGTGTSSRNSEVIHAGIYYPQGSLKARLCVQGRDQ---LYAYAEARGVPHRRCGKLIVATSDAQLAALQGIQAKAAANGVHDLALIDAAQAKAMEPALHCVAALHSPSTGIIDSHALMLSLQGDLEHAGGLLALRSGVDAAQVRPEGIVLRTADGGEWLCRTVVNAAGLQAPALARRFAGLGPEHVPVAHWAKGNYFVLSG 235
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A520GK81_9BURK (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520GK81_9BURK) HSP 1 Score: 223 bits (568), Expect = 1.150e-68 Identity = 122/210 (58.10%), Postives = 146/210 (69.52%), Query Frame = 1
Query: 1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
V+V E E A+G GT+SRNSEVIHAG+YY GSLKARLCV+G K LY Y RG+P+RRCGKLIVA+ Q+ L + RA A GV D++ L +EA EMEPH+ C AL SPSTGIVDSHAL LSLQG+ E AG +V+L++PV GA +L AA+G LRC +VVN AGL A LARR G PD+ P+A FAKGNYF G
Sbjct: 29 VMVLESEGAIGTGTSSRNSEVIHAGIYYPSGSLKARLCVEG---KGMLYGYLASRGLPYRRCGKLIVATSPEQVAQLDGIRARAAANGVDDLQWLEASEAREMEPHLQCLAALHSPSTGIVDSHALMLSLQGEFENAGGIVALKSPVVGAVCEPRAIVLEAADGTRLRCASVVNAAGLGAPRLARRFDGLRPDAVPDAHFAKGNYFTLAG 235
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: UPI0016682F0F (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Comamonas phosphati TaxID=1211803 RepID=UPI0016682F0F) HSP 1 Score: 223 bits (567), Expect = 1.630e-68 Identity = 121/210 (57.62%), Postives = 145/210 (69.05%), Query Frame = 1
Query: 1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
V+V E E A+G GT+SRNSEVIHAG+YY GSLKA+LCV+G K+ LY YC+ RGV HRRCGKLIVA+ Q+ L+ + +A+A GV D++ L AEA +EP + C AL SPSTG+VDSH L LSLQGD E AG +V L PVH A+ A+G L A+G L+ RTVVN AGLSA LARR G PEAFFAKGNYF G
Sbjct: 30 VMVLEAEGAIGTGTSSRNSEVIHAGIYYPQGSLKAKLCVRG---KELLYPYCEMRGVDHRRCGKLIVATSAQQVQQLQGIRAKAQANGVEDLQWLQAAEARALEPALQCEAALLSPSTGVVDSHGLMLSLQGDIENAGGMVVLHAPVHAAEVRADGISLTLADGTQLQTRTVVNAAGLSAPALARRFEGFPRQHVPEAFFAKGNYFALAG 236
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A519FHJ3_9BURK (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A519FHJ3_9BURK) HSP 1 Score: 222 bits (566), Expect = 2.310e-68 Identity = 121/210 (57.62%), Postives = 146/210 (69.52%), Query Frame = 1
Query: 1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
V+V E E A+G GT+SRNSEVIHAG+YY GSLKA+LCV+G K+ LY Y + RG+P RRCGKLIVA+ Q+ L + RA A GV D++ L A+A EMEPH+ C AL SPSTGIVDSHAL LSLQGD E AG VV+LR+PV GA + +L AA+G+ LRC +V+N AGLSA LA R G P P +FAKGNYF G
Sbjct: 29 VMVLESEGAIGTGTSSRNSEVIHAGIYYPQGSLKAQLCVEG---KELLYAYLESRGLPFRRCGKLIVATSPEQVGQLDGIRARAAANGVDDLQWLDAAQAREMEPHLQCHGALHSPSTGIVDSHALMLSLQGDLENAGGVVALRSPVVGAACTEDAIVLNAADGMQLRCASVINAAGLSAPALASRFEGLEPAKVPNDYFAKGNYFTLAG 235
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A3A4RSZ9_9BURK (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A3A4RSZ9_9BURK) HSP 1 Score: 222 bits (566), Expect = 2.370e-68 Identity = 125/210 (59.52%), Postives = 147/210 (70.00%), Query Frame = 1
Query: 1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
V+V ERE+A+G GT+SRNSEVIHAG+YY GSLKA+LCVQGR ALY YC ERGV H+RCGKLIVA SQL AL + ++A+A GV D+RLL AEA EMEP + C A+ SPSTGIVDSH L LSLQGD E AG +V+ T V A G ++ A+G L RTVVN AGL A GLA RV+G P A+FAKGNYF +G
Sbjct: 29 VMVLEREAAIGTGTSSRNSEVIHAGIYYPEGSLKAQLCVQGRL---ALYRYCAERGVAHQRCGKLIVAHTPSQLAALPAILDKARANGVEDLRLLDRAEAREMEPQLECLGAVHSPSTGIVDSHGLMLSLQGDLENAGGLVACHTDVEKLSVSAAGIEVLTADGTRLLARTVVNAAGLGACGLAHRVAGLDARHVPRAWFAKGNYFTLSG 235
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A3D3U0N5_9RHOO (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A3D3U0N5_9RHOO) HSP 1 Score: 221 bits (562), Expect = 2.540e-68 Identity = 124/210 (59.05%), Postives = 145/210 (69.05%), Query Frame = 1
Query: 1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
V+V ERE+AVG GT+SRNSEVIHAG+YY GSLKARLCVQGR + LY YC ERG+ HRRCGKLIVA+ SQL AL + ++A+A GV D+RLL EA MEP + C A+ SPSTGIVDSHAL L+LQGD E AG +V+ V +AL +G + EG L RTVVN AGLSA LA+R G PEA FAKGNYF G
Sbjct: 29 VMVLEREAAVGTGTSSRNSEVIHAGIYYPAGSLKARLCVQGRIQ---LYAYCAERGIGHRRCGKLIVATTPSQLAALPAIVDKARANGVNDLRLLTSEEARAMEPALSCLGAVHSPSTGIVDSHALMLALQGDLENAGGLVAFHAGVSQLRALDQGMEVTTQEGTRLLARTVVNAAGLSACNLAQRTQGLAAQYVPEARFAKGNYFTLAG 235
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: K0HYK4_9BURK (FAD dependent oxidoreductase n=12 Tax=Acidovorax TaxID=12916 RepID=K0HYK4_9BURK) HSP 1 Score: 220 bits (561), Expect = 1.230e-67 Identity = 123/210 (58.57%), Postives = 145/210 (69.05%), Query Frame = 1
Query: 1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
V+V E A+G GT+SRNSEVIHAGLYY GSLKARLCV+G K+ LY YC ERGVPHRRCGKL+VA+ +QL +L + RA+A GV D++ L EA EMEP + C AL SPSTGIVDSHAL L+LQGD E AG VV+L +P+ A ++ L A +G LR RTVVN AGL A LA R G P P AF+AKGNYF TG
Sbjct: 30 VMVLEAADAIGTGTSSRNSEVIHAGLYYPAGSLKARLCVRG---KELLYAYCAERGVPHRRCGKLLVATSAAQLDSLEGIQARARANGVLDLQRLSREEALEMEPALACVGALHSPSTGIVDSHALMLALQGDLEHAGGVVALNSPLALASIGSDAIDLEAVDGTRLRARTVVNAAGLHAPALAARFGGLAPQHVPTAFYAKGNYFTLTG 236 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14476.3239.1 >prot_E-fasciculatus_F_contig14476.3239.1 ID=prot_E-fasciculatus_F_contig14476.3239.1|Name=mRNA_E-fasciculatus_F_contig14476.3239.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=210bp VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWback to top mRNA from alignment at E-fasciculatus_F_contig14476:893..3035+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14476.3239.1 ID=mRNA_E-fasciculatus_F_contig14476.3239.1|Name=mRNA_E-fasciculatus_F_contig14476.3239.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2143bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14476:893..3035+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14476:893..3035+ >mRNA_E-fasciculatus_F_contig14476.3239.1 ID=mRNA_E-fasciculatus_F_contig14476.3239.1|Name=mRNA_E-fasciculatus_F_contig14476.3239.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1260bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14476:893..3035+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |