mRNA_E-fasciculatus_F_contig14476.3239.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14476.3239.1
Unique NamemRNA_E-fasciculatus_F_contig14476.3239.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: D8LN34_ECTSI (FAD dependent oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN34_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 2.720e-131
Identity = 193/209 (92.34%), Postives = 197/209 (94.26%), Query Frame = 1
Query:    1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYT 627
            VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGR   +ALY YC ERG+PHR CGKL+VAS ESQLPALRELHERAKACGVGDVRLLG  EAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGA+AL EGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGS PDSFPEAFFAKGNYFRY 
Sbjct:   34 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGR---EALYRYCGERGLPHRHCGKLVVASSESQLPALRELHERAKACGVGDVRLLGAEEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAEALPEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSIPDSFPEAFFAKGNYFRYA 239          
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A6H5JKE6_9PHAE (DAO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE6_9PHAE)

HSP 1 Score: 384 bits (985), Expect = 3.480e-126
Identity = 197/213 (92.49%), Postives = 202/213 (94.84%), Query Frame = 1
Query:    1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREK---KALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
            VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRRE+   +ALY YC E+GVPHRRCGKL+VAS ESQLPALRELHERAKACGVGDVRLLG AEA EMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVH A+ALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGS PDSFPEAFFAKGNYFRY G
Sbjct:    5 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREEFAAEALYRYCGEKGVPHRRCGKLVVASSESQLPALRELHERAKACGVGDVRLLGAAEAREMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHWAEALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSIPDSFPEAFFAKGNYFRYAG 217          
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A1C6QSR3_9BURK (L-2-hydroxyglutarate oxidase LhgO n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A1C6QSR3_9BURK)

HSP 1 Score: 224 bits (572), Expect = 2.730e-69
Identity = 123/210 (58.57%), Postives = 146/210 (69.52%), Query Frame = 1
Query:    1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
            V+V E E A+G GT+SRNSEVIHAG+YY  GSLKARLCV+G   KK LY Y  ER VPHRRCGKLIVA+ E+Q+  L  +  +A A GV D+ LL   EA  MEP + C  AL SPSTGIVDSHA  LSLQGD E AG VV+L++ V  A+    G +LV A+G  LRC +VVN AGL+A  LARR  G   +S P+AF+AKGNYF   G
Sbjct:   29 VIVLEAEGAIGTGTSSRNSEVIHAGIYYPKGSLKARLCVEG---KKLLYDYARERSVPHRRCGKLIVATSETQVEQLTGIMAKAAANGVDDMVLLSGEEARAMEPQLACTAALLSPSTGIVDSHAFMLSLQGDLEHAGGVVALKSGVASARCEGGGIVLVTADGTHLRCASVVNAAGLAAPALARRFEGLPSESLPQAFYAKGNYFTLAG 235          
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: UPI001CE456CB (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Xenophilus sp. Marseille-Q4582 TaxID=2866600 RepID=UPI001CE456CB)

HSP 1 Score: 224 bits (570), Expect = 5.940e-69
Identity = 122/210 (58.10%), Postives = 150/210 (71.43%), Query Frame = 1
Query:    1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
            VLV E E A+G GT+SRNSEVIHAG+YY  GSLKARLCVQGR +   LY Y + RGVPHRRCGKLIVA+ ++QL AL+ +  +A A GV D+ L+  A+A  MEP + C  AL SPSTGI+DSHAL LSLQGD E AG +++LR+ V  A+   EG +L  A+G +  CRTVVN AGL A  LARR +G  P+  P A +AKGNYF  +G
Sbjct:   29 VLVLESEGAIGTGTSSRNSEVIHAGIYYPQGSLKARLCVQGRDQ---LYAYAEARGVPHRRCGKLIVATSDAQLAALQGIQAKAAANGVHDLALIDAAQAKAMEPALHCVAALHSPSTGIIDSHALMLSLQGDLEHAGGLLALRSGVDAAQVRPEGIVLRTADGGEWLCRTVVNAAGLQAPALARRFAGLGPEHVPVAHWAKGNYFVLSG 235          
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A520GK81_9BURK (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520GK81_9BURK)

HSP 1 Score: 223 bits (568), Expect = 1.150e-68
Identity = 122/210 (58.10%), Postives = 146/210 (69.52%), Query Frame = 1
Query:    1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
            V+V E E A+G GT+SRNSEVIHAG+YY  GSLKARLCV+G   K  LY Y   RG+P+RRCGKLIVA+   Q+  L  +  RA A GV D++ L  +EA EMEPH+ C  AL SPSTGIVDSHAL LSLQG+ E AG +V+L++PV GA       +L AA+G  LRC +VVN AGL A  LARR  G  PD+ P+A FAKGNYF   G
Sbjct:   29 VMVLESEGAIGTGTSSRNSEVIHAGIYYPSGSLKARLCVEG---KGMLYGYLASRGLPYRRCGKLIVATSPEQVAQLDGIRARAAANGVDDLQWLEASEAREMEPHLQCLAALHSPSTGIVDSHALMLSLQGEFENAGGIVALKSPVVGAVCEPRAIVLEAADGTRLRCASVVNAAGLGAPRLARRFDGLRPDAVPDAHFAKGNYFTLAG 235          
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: UPI0016682F0F (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Comamonas phosphati TaxID=1211803 RepID=UPI0016682F0F)

HSP 1 Score: 223 bits (567), Expect = 1.630e-68
Identity = 121/210 (57.62%), Postives = 145/210 (69.05%), Query Frame = 1
Query:    1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
            V+V E E A+G GT+SRNSEVIHAG+YY  GSLKA+LCV+G   K+ LY YC+ RGV HRRCGKLIVA+   Q+  L+ +  +A+A GV D++ L  AEA  +EP + C  AL SPSTG+VDSH L LSLQGD E AG +V L  PVH A+  A+G  L  A+G  L+ RTVVN AGLSA  LARR  G      PEAFFAKGNYF   G
Sbjct:   30 VMVLEAEGAIGTGTSSRNSEVIHAGIYYPQGSLKAKLCVRG---KELLYPYCEMRGVDHRRCGKLIVATSAQQVQQLQGIRAKAQANGVEDLQWLQAAEARALEPALQCEAALLSPSTGVVDSHGLMLSLQGDIENAGGMVVLHAPVHAAEVRADGISLTLADGTQLQTRTVVNAAGLSAPALARRFEGFPRQHVPEAFFAKGNYFALAG 236          
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A519FHJ3_9BURK (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A519FHJ3_9BURK)

HSP 1 Score: 222 bits (566), Expect = 2.310e-68
Identity = 121/210 (57.62%), Postives = 146/210 (69.52%), Query Frame = 1
Query:    1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
            V+V E E A+G GT+SRNSEVIHAG+YY  GSLKA+LCV+G   K+ LY Y + RG+P RRCGKLIVA+   Q+  L  +  RA A GV D++ L  A+A EMEPH+ C  AL SPSTGIVDSHAL LSLQGD E AG VV+LR+PV GA    +  +L AA+G+ LRC +V+N AGLSA  LA R  G  P   P  +FAKGNYF   G
Sbjct:   29 VMVLESEGAIGTGTSSRNSEVIHAGIYYPQGSLKAQLCVEG---KELLYAYLESRGLPFRRCGKLIVATSPEQVGQLDGIRARAAANGVDDLQWLDAAQAREMEPHLQCHGALHSPSTGIVDSHALMLSLQGDLENAGGVVALRSPVVGAACTEDAIVLNAADGMQLRCASVINAAGLSAPALASRFEGLEPAKVPNDYFAKGNYFTLAG 235          
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A3A4RSZ9_9BURK (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A3A4RSZ9_9BURK)

HSP 1 Score: 222 bits (566), Expect = 2.370e-68
Identity = 125/210 (59.52%), Postives = 147/210 (70.00%), Query Frame = 1
Query:    1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
            V+V ERE+A+G GT+SRNSEVIHAG+YY  GSLKA+LCVQGR    ALY YC ERGV H+RCGKLIVA   SQL AL  + ++A+A GV D+RLL  AEA EMEP + C  A+ SPSTGIVDSH L LSLQGD E AG +V+  T V      A G  ++ A+G  L  RTVVN AGL A GLA RV+G      P A+FAKGNYF  +G
Sbjct:   29 VMVLEREAAIGTGTSSRNSEVIHAGIYYPEGSLKAQLCVQGRL---ALYRYCAERGVAHQRCGKLIVAHTPSQLAALPAILDKARANGVEDLRLLDRAEAREMEPQLECLGAVHSPSTGIVDSHGLMLSLQGDLENAGGLVACHTDVEKLSVSAAGIEVLTADGTRLLARTVVNAAGLGACGLAHRVAGLDARHVPRAWFAKGNYFTLSG 235          
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: A0A3D3U0N5_9RHOO (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A3D3U0N5_9RHOO)

HSP 1 Score: 221 bits (562), Expect = 2.540e-68
Identity = 124/210 (59.05%), Postives = 145/210 (69.05%), Query Frame = 1
Query:    1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
            V+V ERE+AVG GT+SRNSEVIHAG+YY  GSLKARLCVQGR +   LY YC ERG+ HRRCGKLIVA+  SQL AL  + ++A+A GV D+RLL   EA  MEP + C  A+ SPSTGIVDSHAL L+LQGD E AG +V+    V   +AL +G  +   EG  L  RTVVN AGLSA  LA+R  G      PEA FAKGNYF   G
Sbjct:   29 VMVLEREAAVGTGTSSRNSEVIHAGIYYPAGSLKARLCVQGRIQ---LYAYCAERGIGHRRCGKLIVATTPSQLAALPAIVDKARANGVNDLRLLTSEEARAMEPALSCLGAVHSPSTGIVDSHALMLALQGDLENAGGLVAFHAGVSQLRALDQGMEVTTQEGTRLLARTVVNAAGLSACNLAQRTQGLAAQYVPEARFAKGNYFTLAG 235          
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Match: K0HYK4_9BURK (FAD dependent oxidoreductase n=12 Tax=Acidovorax TaxID=12916 RepID=K0HYK4_9BURK)

HSP 1 Score: 220 bits (561), Expect = 1.230e-67
Identity = 123/210 (58.57%), Postives = 145/210 (69.05%), Query Frame = 1
Query:    1 VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYWYCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEAGEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGAKALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFFAKGNYFRYTG 630
            V+V E   A+G GT+SRNSEVIHAGLYY  GSLKARLCV+G   K+ LY YC ERGVPHRRCGKL+VA+  +QL +L  +  RA+A GV D++ L   EA EMEP + C  AL SPSTGIVDSHAL L+LQGD E AG VV+L +P+  A   ++   L A +G  LR RTVVN AGL A  LA R  G  P   P AF+AKGNYF  TG
Sbjct:   30 VMVLEAADAIGTGTSSRNSEVIHAGLYYPAGSLKARLCVRG---KELLYAYCAERGVPHRRCGKLLVATSAAQLDSLEGIQARARANGVLDLQRLSREEALEMEPALACVGALHSPSTGIVDSHALMLALQGDLEHAGGVVALNSPLALASIGSDAIDLEAVDGTRLRARTVVNAAGLHAPALAARFGGLAPQHVPTAFYAKGNYFTLTG 236          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14476.3239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN34_ECTSI2.720e-13192.34FAD dependent oxidoreductase n=1 Tax=Ectocarpus si... [more]
A0A6H5JKE6_9PHAE3.480e-12692.49DAO domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A1C6QSR3_9BURK2.730e-6958.57L-2-hydroxyglutarate oxidase LhgO n=3 Tax=unclassi... [more]
UPI001CE456CB5.940e-6958.10NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Xenoph... [more]
A0A520GK81_9BURK1.150e-6858.10NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Variov... [more]
UPI0016682F0F1.630e-6857.62NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Comamo... [more]
A0A519FHJ3_9BURK2.310e-6857.62NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Variov... [more]
A0A3A4RSZ9_9BURK2.370e-6859.52NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Comamo... [more]
A0A3D3U0N5_9RHOO2.540e-6859.05FAD-dependent oxidoreductase (Fragment) n=1 Tax=Rh... [more]
K0HYK4_9BURK1.230e-6758.57FAD dependent oxidoreductase n=12 Tax=Acidovorax T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14476contigE-fasciculatus_F_contig14476:893..3035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.8
Seed ortholog evalue8.3e-103
Seed eggNOG ortholog2880.D8LN34
KEGG koko:K10742,ko:K14327,ko:K20298
KEGG Pathwayko03013,ko03015,ko03030,map03013,map03015,map03030
KEGG ModuleM00430
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003973,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016899,GO:0036094,GO:0043167,GO:0043168,GO:0047545,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071949,GO:0097159,GO:1901265,GO:1901363
EggNOG free text desc.2-hydroxyglutarate dehydrogenase activity
EggNOG OGsCOG0579@1,KOG2665@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03032,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD dependent oxidoreductase
Ec32 orthologEc-05_003310.2
Exons4
Model size630
Cds size630
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14476.3239.1prot_E-fasciculatus_F_contig14476.3239.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14476 893..3035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927933.1282449-CDS-E-fasciculatus_F_contig14476:892..10281622927933.1282449-CDS-E-fasciculatus_F_contig14476:892..1028Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14476 893..1028 +
1695995756.6841962-CDS-E-fasciculatus_F_contig14476:892..10281695995756.6841962-CDS-E-fasciculatus_F_contig14476:892..1028Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14476 893..1028 +
1622927933.1395056-CDS-E-fasciculatus_F_contig14476:1531..17281622927933.1395056-CDS-E-fasciculatus_F_contig14476:1531..1728Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14476 1532..1728 +
1695995756.6947463-CDS-E-fasciculatus_F_contig14476:1531..17281695995756.6947463-CDS-E-fasciculatus_F_contig14476:1531..1728Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14476 1532..1728 +
1622927933.1518025-CDS-E-fasciculatus_F_contig14476:2235..23551622927933.1518025-CDS-E-fasciculatus_F_contig14476:2235..2355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14476 2236..2355 +
1695995756.707511-CDS-E-fasciculatus_F_contig14476:2235..23551695995756.707511-CDS-E-fasciculatus_F_contig14476:2235..2355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14476 2236..2355 +
1622927933.1617708-CDS-E-fasciculatus_F_contig14476:2858..30351622927933.1617708-CDS-E-fasciculatus_F_contig14476:2858..3035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14476 2859..3035 +
1695995756.7203512-CDS-E-fasciculatus_F_contig14476:2858..30351695995756.7203512-CDS-E-fasciculatus_F_contig14476:2858..3035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14476 2859..3035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14476.3239.1

>prot_E-fasciculatus_F_contig14476.3239.1 ID=prot_E-fasciculatus_F_contig14476.3239.1|Name=mRNA_E-fasciculatus_F_contig14476.3239.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=210bp
VLVCERESAVGQGTTSRNSEVIHAGLYYDPGSLKARLCVQGRREKKALYW
YCDERGVPHRRCGKLIVASFESQLPALRELHERAKACGVGDVRLLGVAEA
GEMEPHVLCAEALFSPSTGIVDSHALTLSLQGDAEAAGAVVSLRTPVHGA
KALAEGGILVAAEGVDLRCRTVVNCAGLSAVGLARRVSGSCPDSFPEAFF
AKGNYFRYTG
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mRNA from alignment at E-fasciculatus_F_contig14476:893..3035+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14476.3239.1 ID=mRNA_E-fasciculatus_F_contig14476.3239.1|Name=mRNA_E-fasciculatus_F_contig14476.3239.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2143bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14476:893..3035+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCTGGTGTGCGAACGAGAGAGCGCCGTCGGGCAAGGCACGACGTCGAG GAACTCCGAGGTGATTCACGCCGGGTTGTACTACGACCCGGGCTCGCTCA AGGCTCGGCTGTGCGTGCAGGGGAGGCGAGAAAAAAGTGTTCGCGTGTGT CACACTACATACCATGTTGCTGTTTTAGATGTAGTGCTCAGCAGCACACA CAATAATATTTGGCAGGCAGAAGAAACTGCAATTGTCGGTGGTCACTTTG AGACTTGACCGCCGAATGACGGCTTCCCGTTTTTTTTATCACTTCGATGT ACAGCAGTGCTTGGTCTTCGCAAAGCCAAAGTCGAACGTGGTTCGTCCCC CGCGTTGCAGGAATGCAAGGCTCCACGTGCTTAAGACCGCCGCCACCAAT GACCCGCCCCCCACCCCCACCCTTGTGGTTTGGCGCAGCAAACGTGCTAG GATGATGACCAACTACGTAGTTTCTGGTGCATCCTTGTGAAACGTAGATA GCCTGGGCCTATCCCGGCATACCACGCCGTCCCGGCATTGCAGGAAAGGG AGGTGAATGGTCCAACAACCAAGGCATAAGAAGCATGAATATCCCCCCCG CGCCTGTTTCCCCGATGGTAACACCGCAATGCAACAGAGAGGCTCTCTAC TGGTACTGCGACGAGAGAGGAGTGCCGCACCGGCGTTGCGGAAAGCTCAT CGTCGCCTCGTTCGAGTCGCAGCTCCCGGCCCTGAGGGAGTTGCATGAGA GGGCCAAGGCATGCGGCGTCGGGGACGTTCGGCTGCTAGGGGTGGCGGAG GCCGGGGAAATGGAGCCGCACGTGCTCTGCGCTGAAGTGAGATTCCCCCC CGTTCTCCAAGCGAGTGTGTGGTACATGACCAAACGACTAATTTGTAGAA CAAGGCCGGGAATGTATATATCGCACCAGTTGCTGCTGTTGCTGCTGCTG CTGCTGCTGCTGAAGTCTACTGACTTAAGCGTCTTGCGCCAGTTGGCCCT TGCGCCAGGTTGGAGCCCCTCTGGTGCTGTTGAAGTCGGCGTTTTCTCAC TGTGTGTTTCCACCTGCGGGCGAGAGTCGCGGTGGATATCGCCATTCCAC ACGCCAAAAAGGAGGTTTTGCGAGAGAGACCTGTCCCGCTTCTGCCTCGT CAAGACGATTCAGGCCTTGGTTATCTCTTCCCAGGTTTTTGGCTCATATA TCCACTTGAGACATTTTTCATGTAGACCCTCCTTCCTGTCTTCCTCTGCT CTGACTCCGTTCTTCGTTTTGGTTTTTTGTTCCTCCGCCAACGACCTTTT CCGTTGCGGGACGATGGTCATCACATCATCGCGCCATCACCAGGCGTTGT TCTCCCCCAGCACGGGTATCGTGGACAGCCACGCCCTGACCCTCTCGCTG CAGGGAGACGCGGAAGCTGCCGGCGCGGTTGTGTCTCTTCGCACACCTGT TCACGGGGCCAAGGTGCCGGGGGCTGCTTGTAGTTGTTGTTGTTGTTGTT TTTGTTGGTGTCGTTGTTGTTGTTGAGCACAGGGAAAACTTGTTAGTTGG GCATAGCACCGCCGTTGTCGAACGCCACTGGACAATCTCGCCGGCGTCGA ACCGTGTTACCCAGACCCTAGCTCACACGCACGCGCTTGCCTAGGCAGGG GTCGGCTATGAAACAGAGCTGAAACTTGTAACACCCTTGAATCGCTGATT CCTATCGTGCGTGTGGATTAAACAGAATCGTCTTACACTTACATGCATGA CGACTACTGTCGCAGCCCCAAGGACAAATGACAGCTCAATACCCCCTCTC GTTGCTTTACGCGATGCCTTTCTTTCGCTGCCACCCCCAGGCACTAGCCC ATTACCTCCTCTCGTGGCCTTATGCGATGCCTTCCTTTCGCTGCCACCCC CAGGCACTAGCCCATTTCCTCCTCTCGTAGCTTTACCCGATGCCTTCCTT TCGTTGCCACCCCCAGGCTCTAGCAGAGGGGGGCATCTTGGTGGCAGCCG AGGGCGTGGACCTCCGATGCCGGACGGTGGTCAACTGCGCCGGGTTGAGC GCGGTCGGTCTGGCGCGGAGGGTGTCGGGCTCCTGCCCCGATTCCTTCCC GGAGGCGTTTTTCGCGAAGGGCAACTACTTCCGATATACCGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14476:893..3035+

>mRNA_E-fasciculatus_F_contig14476.3239.1 ID=mRNA_E-fasciculatus_F_contig14476.3239.1|Name=mRNA_E-fasciculatus_F_contig14476.3239.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1260bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14476:893..3035+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCTGGTGTGCGAACGAGAGAGCGCCGTCGGGCAAGGCACGACGTCGAG
GAACTCCGAGGTGATTCACGCCGGGTTGTACTACGACCCGGGCTCGCTCA
AGGCTCGGCTGTGCGTGCAGGGGAGGCGAGAAAAAAGTGCTGGTGTGCGA
ACGAGAGAGCGCCGTCGGGCAAGGCACGACGTCGAGGAACTCCGAGGTGA
TTCACGCCGGGTTGTACTACGACCCGGGCTCGCTCAAGGCTCGGCTGTGC
GTGCAGGGGAGGCGAGAAAAAAAGGCTCTCTACTGGTACTGCGACGAGAG
AGGAGTGCCGCACCGGCGTTGCGGAAAGCTCATCGTCGCCTCGTTCGAGT
CGCAGCTCCCGGCCCTGAGGGAGTTGCATGAGAGGGCCAAGGCATGCGGC
GTCGGGGACGTTCGGCTGCTAGGGGTGGCGGAGGCCGGGGAAATGGAGCC
GCACGTGCTCTGCGCTGAAAGGCTCTCTACTGGTACTGCGACGAGAGAGG
AGTGCCGCACCGGCGTTGCGGAAAGCTCATCGTCGCCTCGTTCGAGTCGC
AGCTCCCGGCCCTGAGGGAGTTGCATGAGAGGGCCAAGGCATGCGGCGTC
GGGGACGTTCGGCTGCTAGGGGTGGCGGAGGCCGGGGAAATGGAGCCGCA
CGTGCTCTGCGCTGAAGCGTTGTTCTCCCCCAGCACGGGTATCGTGGACA
GCCACGCCCTGACCCTCTCGCTGCAGGGAGACGCGGAAGCTGCCGGCGCG
GTTGTGTCTCTTCGCACACCTGTTCACGGGGCCAAGGCGTTGTTCTCCCC
CAGCACGGGTATCGTGGACAGCCACGCCCTGACCCTCTCGCTGCAGGGAG
ACGCGGAAGCTGCCGGCGCGGTTGTGTCTCTTCGCACACCTGTTCACGGG
GCCAAGGCTCTAGCAGAGGGGGGCATCTTGGTGGCAGCCGAGGGCGTGGA
CCTCCGATGCCGGACGGTGGTCAACTGCGCCGGGTTGAGCGCGGTCGGTC
TGGCGCGGAGGGTGTCGGGCTCCTGCCCCGATTCCTTCCCGGAGGCGTTT
TTCGCGAAGGGCAACTACTTCCGATATACCGGTGCTCTAGCAGAGGGGGG
CATCTTGGTGGCAGCCGAGGGCGTGGACCTCCGATGCCGGACGGTGGTCA
ACTGCGCCGGGTTGAGCGCGGTCGGTCTGGCGCGGAGGGTGTCGGGCTCC
TGCCCCGATTCCTTCCCGGAGGCGTTTTTCGCGAAGGGCAACTACTTCCG
ATATACCGGT
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