mRNA_E-fasciculatus_F_contig14469.3236.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: D8LER9_ECTSI (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER9_ECTSI) HSP 1 Score: 167 bits (423), Expect = 1.550e-48 Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query: 1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVR 261
RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEE RVELK+RM R
Sbjct: 80 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEELRVELKQRMPR 166
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A6H5L0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D3_9PHAE) HSP 1 Score: 167 bits (424), Expect = 4.860e-47 Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1
Query: 1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVRE 264
RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYA VLAGLGVGVSLLCKDEEFMPFLSEE RVELK+RM+R+
Sbjct: 217 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYATVLAGLGVGVSLLCKDEEFMPFLSEELRVELKQRMIRD 304
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A836CA28_9STRA (Soluble pyridine nucleotide transhydogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA28_9STRA) HSP 1 Score: 112 bits (281), Expect = 2.000e-27 Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 1
Query: 1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVR 261
R +RP ++ G +PF KG+VVD+TEMG I +LPNA AI+GGGVIAVEYA VLA LGVGVSLLC+D++FM FL+EE R L+KRM +
Sbjct: 72 RAHRPKEIAPGVAIPFTKGIVVDSTEMGQIAELPNAVAILGGGVIAVEYATVLARLGVGVSLLCQDKDFMSFLTEELRDALRKRMPK 158
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A7R9U251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U251_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.040e-20 Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 1 RPNRPPKMRS-GSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVRE 264
RP RP +R+ + +P+ GVV+D+T MG + +LP A A+ GGGVIAVEYA VLA LGVGVSLLC + F+PFL ++ R L++R+ R+
Sbjct: 234 RPARPATLRNTDAPIPWTPGVVMDSTGMGNLANLPKAAAVFGGGVIAVEYATVLARLGVGVSLLCSESSFLPFLPQDVRRRLRRRLQRD 322
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: K8YWP5_NANGC (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWP5_NANGC) HSP 1 Score: 92.8 bits (229), Expect = 3.210e-20 Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVREG 267
RP+RP ++R G +P+ +V+DAT++ + +LP++ A+IGGGVI+VEYA V A +G+ SLLC++E F+PFL E + +K M R G
Sbjct: 228 RPSRPKELRPGVPIPYTSRLVIDATQIANLKELPDSLAVIGGGVISVEYATVFAAMGLPTSLLCREEAFLPFLPTELQTAIKADMARNG 316
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A4D9CSA5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 5.420e-20 Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVREG 267
RP+RP ++R G +P+ +V+DAT++ + +LP++ A+IGGGVI+VEYA V A +G+ SLLC++E F+PFL E + +K M R G
Sbjct: 247 RPSRPKELRPGVPIPYTSRLVIDATQIANLKELPDSLAVIGGGVISVEYATVFAAMGLPTSLLCREEAFLPFLPTELQTAIKADMARNG 335
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: H6WB84_VAULI (Soluble pyridine nucleotide transhydogenase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB84_VAULI) HSP 1 Score: 91.7 bits (226), Expect = 1.010e-19 Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 1 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVRE 264
R +RP K+ + F+ V++D+TEM I DLP IIGGGVIAVEYA V A LGVGVSL+C + F+PFL E+ + L+ RM +E
Sbjct: 60 RAHRPNKIYKNISIEFVPNVIIDSTEMSQIVDLPRTVGIIGGGVIAVEYATVFAKLGVGVSLICPKKNFLPFLEEDIKEALRARMSKE 147
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A7S1U0J3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0J3_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 7.790e-16 Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 37 RLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVELKKRMVRE 264
R+P+ V D++ M I++LP A AIIG GVIA+EYA VLA LGVGVSLLC ++ F+PFL+ + R L++R+ R+
Sbjct: 129 RVPWEAKGVTDSSGMSNISELPRAVAIIGSGVIALEYATVLARLGVGVSLLCAEDGFLPFLAGDLRRRLRRRLQRD 204
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A7S2Y1R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R6_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.140e-15 Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 37 RLPFMK--GVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVEL 243
R+PF++ G +VDAT+ +++LPN+ IIGGGVIAVEYA V A LGVGV+LLCK++ F+PFL E + L
Sbjct: 214 RIPFLESGGRIVDATKASGMSELPNSILIIGGGVIAVEYATVFAELGVGVTLLCKEKAFLPFLDTELKQAL 284
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Match: A0A6U8N6N8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8N6N8_9EUGL) HSP 1 Score: 68.2 bits (165), Expect = 2.470e-11 Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 40 LPFMKGVVVDATEM-GTIT-DLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDEEFMPFLSEEFRVEL 243
+PFMK +VD+TE+ T+ LP C IIGGG+IAVEYA VLA +GVG+++ C + FM L R L
Sbjct: 343 VPFMKDRIVDSTEICSTLAMGLPKTCGIIGGGIIAVEYATVLASVGVGITIFCNKDRFMTMLPRILRESL 412 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14469.3236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14469.3236.1 >prot_E-fasciculatus_F_contig14469.3236.1 ID=prot_E-fasciculatus_F_contig14469.3236.1|Name=mRNA_E-fasciculatus_F_contig14469.3236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp MRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGback to top mRNA from alignment at E-fasciculatus_F_contig14469:158..937+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14469.3236.1 ID=mRNA_E-fasciculatus_F_contig14469.3236.1|Name=mRNA_E-fasciculatus_F_contig14469.3236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14469:158..937+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14469:158..937+ >mRNA_E-fasciculatus_F_contig14469.3236.1 ID=mRNA_E-fasciculatus_F_contig14469.3236.1|Name=mRNA_E-fasciculatus_F_contig14469.3236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14469:158..937+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |