mRNA_E-fasciculatus_F_contig1446.3235.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1446.3235.1
Unique NamemRNA_E-fasciculatus_F_contig1446.3235.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1446.3235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1446contigE-fasciculatus_F_contig1446:11316..12538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_000470.1
Exons2
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927932.5817382-CDS-E-fasciculatus_F_contig1446:11315..115101622927932.5817382-CDS-E-fasciculatus_F_contig1446:11315..11510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1446 11316..11510 -
1695995756.4948452-CDS-E-fasciculatus_F_contig1446:11315..115101695995756.4948452-CDS-E-fasciculatus_F_contig1446:11315..11510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1446 11316..11510 -
1622927932.7606826-CDS-E-fasciculatus_F_contig1446:12400..125381622927932.7606826-CDS-E-fasciculatus_F_contig1446:12400..12538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1446 12401..12538 -
1695995756.5105155-CDS-E-fasciculatus_F_contig1446:12400..125381695995756.5105155-CDS-E-fasciculatus_F_contig1446:12400..12538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1446 12401..12538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1446.3235.1prot_E-fasciculatus_F_contig1446.3235.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1446 11316..12538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1446.3235.1

>prot_E-fasciculatus_F_contig1446.3235.1 ID=prot_E-fasciculatus_F_contig1446.3235.1|Name=mRNA_E-fasciculatus_F_contig1446.3235.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=111bp
MRWVTKACFFLACFASPRPCLGFNLPFRKPEATKEPLPSPPGRRYKDLLQ
SVDWTFVATAAAVASMGPLPASVARLHTVARVSLKACRAVSIGLGWLLRE
TEEADNEAVLQ
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mRNA from alignment at E-fasciculatus_F_contig1446:11316..12538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1446.3235.1 ID=mRNA_E-fasciculatus_F_contig1446.3235.1|Name=mRNA_E-fasciculatus_F_contig1446.3235.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1223bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1446:11316..12538- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTTGGGTGACGAAGGCATGTTTCTTCCTGGCGTGCTTCGCTTCTCC
GCGACCATGCCTGGGATTCAACCTGCCCTTTCGGAAACCTGAAGCAACCA
AGGAGCCCCTTCCTTCCCCGCCTGGGAGGAGATACAAGGTAAGACCGTTG
TGACATTCCGGGCGAAGGTTTTGCTCTTGCTTTGAGCATGCGGTTTCTCG
TCGATCGCGGCCGAGCGTAGACGGTAGTTGATTTGTGCAGTTAGTGGAAA
CCTACCCCGTACCTTCTCAAACATGACCCCGTCCCGGCGAAAGCAAGAAA
AAATATAATTGCTGAACGTATATGGTAAACGACATGAGTTGGCCCTCGGG
GTTCACGTGAACGCATCGAGGAAACCCCCTCGCTGAAAGATAGAGTTGAC
GCCCAGCGGATGTGCGTACGGTCGGTGCATTCTTATGTTGTCATGTAGAC
AGGCACGTCATCTCGGAACATCTCGATGTCTTTGCAGCATCGTGCAGTGT
ACTGTTGTGGCTGTTGACGTTCTTGTTGTAATGTCTCATACCAAGGATCT
ATCATCGGCATGAACACACACCTAGTCGTGGTCGTTGTTGTTGAGAGATA
ACACAATAATTCGTAGTTGGAATCCGCTGGGAAAGCGGGAGGGGGAAGTG
TGGAAACAGCAGTGTTTTACCCTCTTCTACCCACAATAACGTTTCCCCTC
AAGCCTTCCTTGTTCCTATCAACAGACCCCTCAGCCTTGGACAAAATTGT
TCACCGGGCGTTTTTTCTCATGAAATGGTCGAATACCTCCTCGCAAGGAC
GTTGCGGCCTTAGAACCGAACGTCAGCAGTGCAAAGTTGGGTCACCTGTC
GATCAACATGGGTTCCGTACTCAAAACAGCAGCCCGTGACGCCTACAGAG
CAGCCGCAAATACGAACCTGGCTCGAAGCATTCGACCTGGCGTGCTGCTT
TGCAAAATAACTCTTTTGTATCGTCTCTTGCCACTCCGCCCCCGCGATGT
TGACCGCCGCCATGCGAACCACTTCCAGGATCTGCTTCAATCGGTCGACT
GGACCTTTGTGGCCACAGCTGCGGCGGTGGCTTCCATGGGTCCCTTGCCG
GCATCTGTGGCTCGCCTTCACACGGTAGCCCGCGTGTCGCTGAAGGCGTG
CCGAGCAGTGTCCATAGGGCTTGGGTGGCTTCTCCGAGAAACCGAGGAGG
CCGACAACGAGGCTGTCCTCCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1446:11316..12538-

>mRNA_E-fasciculatus_F_contig1446.3235.1 ID=mRNA_E-fasciculatus_F_contig1446.3235.1|Name=mRNA_E-fasciculatus_F_contig1446.3235.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1446:11316..12538- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTTGGGTGACGAAGGCATGTTTCTTCCTGGCGTGCTTCGCTTCTCC
GCGACCATGCCTGGGATTCAACCTGCCCTTTCGGAAACCTGAAGCAACCA
AGGAGCCCCTTCCTTCCCCGCCTGGGAGGAGATACAAGATGCGTTGGGTG
ACGAAGGCATGTTTCTTCCTGGCGTGCTTCGCTTCTCCGCGACCATGCCT
GGGATTCAACCTGCCCTTTCGGAAACCTGAAGCAACCAAGGAGCCCCTTC
CTTCCCCGCCTGGGAGGAGATACAAGGATCTGCTTCAATCGGTCGACTGG
ACCTTTGTGGCCACAGCTGCGGCGGTGGCTTCCATGGGTCCCTTGCCGGC
ATCTGTGGCTCGCCTTCACACGGTAGCCCGCGTGTCGCTGAAGGCGTGCC
GAGCAGTGTCCATAGGGCTTGGGTGGCTTCTCCGAGAAACCGAGGAGGCC
GACAACGAGGCTGTCCTCCAGGATCTGCTTCAATCGGTCGACTGGACCTT
TGTGGCCACAGCTGCGGCGGTGGCTTCCATGGGTCCCTTGCCGGCATCTG
TGGCTCGCCTTCACACGGTAGCCCGCGTGTCGCTGAAGGCGTGCCGAGCA
GTGTCCATAGGGCTTGGGTGGCTTCTCCGAGAAACCGAGGAGGCCGACAA
CGAGGCTGTCCTCCAG
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