mRNA_E-fasciculatus_F_contig14457.3234.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14457.3234.1
Unique NamemRNA_E-fasciculatus_F_contig14457.3234.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14457.3234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14457contigE-fasciculatus_F_contig14457:64..372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927932.5217943-CDS-E-fasciculatus_F_contig14457:63..1491622927932.5217943-CDS-E-fasciculatus_F_contig14457:63..149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14457 64..149 +
1695995756.4764876-CDS-E-fasciculatus_F_contig14457:63..1491695995756.4764876-CDS-E-fasciculatus_F_contig14457:63..149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14457 64..149 +
1622927932.5360355-CDS-E-fasciculatus_F_contig14457:286..3711622927932.5360355-CDS-E-fasciculatus_F_contig14457:286..371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14457 287..371 +
1695995756.4866877-CDS-E-fasciculatus_F_contig14457:286..3711695995756.4866877-CDS-E-fasciculatus_F_contig14457:286..371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14457 287..371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14457.3234.1prot_E-fasciculatus_F_contig14457.3234.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14457 64..371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14457.3234.1

>prot_E-fasciculatus_F_contig14457.3234.1 ID=prot_E-fasciculatus_F_contig14457.3234.1|Name=mRNA_E-fasciculatus_F_contig14457.3234.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=57bp
HCHNTGLFDFLLKLGASSTGISPWISNISIRFSWARKTETARTYDQKRVA
EIQHTAN
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mRNA from alignment at E-fasciculatus_F_contig14457:64..372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14457.3234.1 ID=mRNA_E-fasciculatus_F_contig14457.3234.1|Name=mRNA_E-fasciculatus_F_contig14457.3234.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=309bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14457:64..372+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATTGTCATAACACTGGGTTGTTCGATTTCTTGCTAAAGTTGGGGGCATC
GTCAACCGGAATTTCGCCATGGATTTCAAACATTAGGTATGTTGGAATTC
TTATCTGGGTGCCCCCCTCTGCTCCTCCACCGGTGGCGCGAGGCCGGAGA
TAAAGTCTGGATAGGTCAGCTTGTACTGCACTTCACTCCACGCAAAACCT
CGTCACGCTGTGCCCGCCGACAGCATTCGCTTCTCTTGGGCCAGGAAGAC
GGAGACAGCACGGACCTACGACCAAAAACGGGTCGCCGAGATACAGCACA
CAGCAAATC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14457:64..372+

>mRNA_E-fasciculatus_F_contig14457.3234.1 ID=mRNA_E-fasciculatus_F_contig14457.3234.1|Name=mRNA_E-fasciculatus_F_contig14457.3234.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14457:64..372+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATTGTCATAACACTGGGTTGTTCGATTTCTTGCTAAAGTTGGGGGCATC
GTCAACCGGAATTTCGCCATGGATTTCAAACATTAGCATTGTCATAACAC
TGGGTTGTTCGATTTCTTGCTAAAGTTGGGGGCATCGTCAACCGGAATTT
CGCCATGGATTTCAAACATTAGCATTCGCTTCTCTTGGGCCAGGAAGACG
GAGACAGCACGGACCTACGACCAAAAACGGGTCGCCGAGATACAGCACAC
AGCAAATCATTCGCTTCTCTTGGGCCAGGAAGACGGAGACAGCACGGACC
TACGACCAAAAACGGGTCGCCGAGATACAGCACACAGCAAAT
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