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Homology
BLAST of mRNA_E-fasciculatus_F_contig14454.3233.1 vs. uniprot
Match: D7FGW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW0_ECTSI) HSP 1 Score: 109 bits (273), Expect = 5.220e-21 Identity = 201/314 (64.01%), Postives = 210/314 (66.88%), Query Frame = 1
Query: 337 RAEQGGTPLGGVSASYDSVNAAAATPXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAPRGPRMRYTVAGFTNDSIIPRGRSFATAAEAAAFSAGHASYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQDHARLMREMDAVNAAAFTESFAYMTRETERLRAQQRTADRSRRLGEGEEXXXXXXXXXXXXXXXXXXXXXVSEVAXXXVAAAELPSSRMDLLARLAGLEEPMPARRTST-AVSLNSSAS 1275
RAEQ G G VS +DSV AAAA P XXXXXXXXXXXXXXXXXXXXXXXX GAAA RGPRMRYTVAGF N+SI+ RGRSFA+AAEAAAFSA ASYAA XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX L R M AVNAAA + A +T E ERLRAQ+R ADRSRRLGE EEXXXXXXXXXXXXXXXXXXXXX XX AE+PS RMDLLARLAGLEE MPARR + A SLNSSAS
Sbjct: 267 RAEQRGASPGVVSEWWDSVAAAAAAPAXXXXXXXXXXXXXXXXXXXXXXXXSGAAATRGPRMRYTVAGFANNSIMGRGRSFASAAEAAAFSASRASYAAAAEPVRFSNSSILPISTPRGLAIATATAXXXXXXXXXXXXXXXXXXXXXXXXRLRAQRRATERSGRLGEEXXXXXXXXXXXXXXXLS-------------LERTMAAVNAAAARRALASITLEAERLRAQRRAADRSRRLGEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXX----AEVPS-RMDLLARLAGLEERMPARRAAPGAASLNSSAS 562
BLAST of mRNA_E-fasciculatus_F_contig14454.3233.1 vs. uniprot
Match: A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 4.130e-16 Identity = 106/185 (57.30%), Postives = 119/185 (64.32%), Query Frame = 1
Query: 934 LMREMDAVNAAAFTESFAYMTRETERLRAQQRTADRSRRLGEGEEXXXXXXXXXXXXXXXXXXXXXVSEVAXXXVAAAELPSSRMDLLARLAGLEEPMPARRTSTAVSLNSSASPPPSISATARVTRSVTRNTRWSSASSXXXXXXXXEVVAAAAIPTRVSPRRTRTMSVALERWVASGQGGGGG 1488
L R M AV+A A A +T+ ERLRAQ+R ADRSRRL E E+ XXXXXXXXXXXXX XXX +PS RMDLLARLAGLEEPMPARR + A S + PSISATA VTRS TRNTR + XXXXXXX EVV A PT VSPRR +S A+ W+A+ GG GG
Sbjct: 365 LERTMAAVHATAARRELASITQVAERLRAQRRAADRSRRLEEVEKEERSLQREXXXXXXXXXXXXXXXXXXXXXXXXXAVPS-RMDLLARLAGLEEPMPARRAADATSAS------PSISATAGVTRSATRNTR---SXXXXXXXXXTEVVTVA--PTWVSPRRR--LSEAVATWLANAGGGDGG 535
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 2525 |
| Cds size | 1395 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14454.3233.1 >prot_E-fasciculatus_F_contig14454.3233.1 ID=prot_E-fasciculatus_F_contig14454.3233.1|Name=mRNA_E-fasciculatus_F_contig14454.3233.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=465bp
MGSAAAARQATFEAYAVQHQANLLATRARREAELRDQHQTQLTAAREVQQ AAARALAEAQARQAAGTRARQVAAAEARAEQGGTPLGGVSASYDSVNAAA ATPAAAAPAAAAPTAAAAPAAAAAAATPSGAAAPRGPRMRYTVAGFTNDS IIPRGRSFATAAEAAAFSAGHASYAAAAAAAAAAAPEPASSNSSMTPTNR PRTFATAAAGAANAAAAARAEARSAATAAAAAAAAATTASEQLRARMRAD DRSRRLGGDEEEERSRQRERQQDHARLMREMDAVNAAAFTESFAYMTRET ERLRAQQRTADRSRRLGEGEEEEERSQQRERQQEEEARRRDGVSEVAAAA VAAAELPSSRMDLLARLAGLEEPMPARRTSTAVSLNSSASPPPSISATAR VTRSVTRNTRWSSASSAPASATATEVVAAAAIPTRVSPRRTRTMSVALER WVASGQGGGGGPSA* back to topmRNA from alignment at E-fasciculatus_F_contig14454:199..3309+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14454.3233.1 ID=mRNA_E-fasciculatus_F_contig14454.3233.1|Name=mRNA_E-fasciculatus_F_contig14454.3233.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3111bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14454:199..3309+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GAGAAGGTGTTTGTGAAGGACGTACGCGTGCGCAAGCTGTCGCACAAGAA
GAGGCTCGCTCAGGCTGCCCGCGAAGCTCACCCGCAGGTGAGCCTATTTA
GCGTCGAGACTGCTACTGCATGCAATAAAACAAGCACACGAAGCCTCATG
TCGAGCAGTCAAGATTGCCTGAATATGGAAGAATAACTACGAGTCGGCAT
CAGCTTGCTCCCAGTAGCGATACACCTGGTAGCTAAGATATGTGGGCTGG
TTGTTGTTGTTAGTTGTTATTTTACCCTTCCGGGACGCGTTCTTGGTCAG
ATTCCTCCACACTATTCAGCCTGTCTCCAAAGAATTGTATCCCAGGCCGA
TATTATCTGACCTCGCGAAATTTTTGCGATTAGACGTGAGTTCGAATCTC
GTACTTTTTTTTTTTTCTCGCATCTTGCTGCCGCCCGAGCAAGTACGCGT
CGCGCACATCCGAACGCGCGAAGTTGCGCTATGTAGACCGCGTACTCTAA
CGTCTGCATAGCGTCATCAGTCATGGCGAAATAAAATTGACCCTCCACAA
GCATGTGACCCGCATCTGATCGAAAACGTTCAACTGTTTGTTTTCTCCGG
CACCGATGCTCGCTACGCTACGCTACTTCTCACCGGGGGCGCTACTTCGA
TGACGACGACACAACGTCCTGCCGGCCGCGACACACAGACCATGGGAAGC
GCTGCGGCAGCCCGCCAGGCGACCTTCGAGGCTTACGCCGTCCAGCACCA
GGCCAACCTCCTCGCTACCCGCGCCCGGCGGGAAGCGGAGCTGCGGGACC
AGCACCAGACCCAACTGACGGCCGCCCGCGAGGTGCAGCAGGCGGCGGCG
CGGGCGCTGGCGGAGGCCCAGGCCAGGCAGGCGGCGGGGACCCGGGCCCG
CCAAGTCGCGGCGGCGGAGGCCAGAGCCGAGCAGGGGGGTACGCCCCTGG
GCGGCGTTTCGGCGTCGTATGATTCCGTGAACGCTGCTGCCGCCACCCCC
GCCGCCGCAGCCCCCGCTGCCGCCGCCCCCACTGCCGCCGCCGCCCCCGC
TGCCGCTGCTGCCGCTGCTACCCCTTCGGGTGCTGCGGCTCCTAGGGGTC
CTAGGATGAGGTACACCGTTGCGGGGTTCACGAACGACAGCATAATACCT
CGGGGGCGATCGTTCGCCACTGCCGCGGAGGCGGCGGCCTTTTCTGCCGG
CCACGCCTCGTACGCTGCCGCCGCCGCTGCCGCCGCCGCCGCTGCTCCTG
AGCCCGCGAGCTCCAATTCTAGCATGACGCCCACCAACAGGCCTCGAACA
TTCGCCACTGCCGCCGCGGGCGCCGCTAACGCCGCTGCCGCCGCGCGTGC
TGAGGCCAGGTCTGCAGCCACCGCCGCCGCTGCTGCCGCCGCCGCTGCCA
CCACTGCTTCGGAGCAGCTTCGCGCGCGGATGAGGGCGGACGACCGCTCC
CGCCGGCTGGGGGGGGACGAGGAGGAGGAGAGGTCGCGGCAGCGCGAGCG
GCAGCAGGATCATGCCCGCCTCATGCGGGAAATGGACGCCGTGAACGCTG
CCGCCTTCACTGAGAGTTTCGCTTATATGACCCGGGAAACGGAGCGGCTT
CGGGCGCAGCAGCGGACGGCCGACCGCTCTCGCCGGCTGGGGGAGGGCGA
GGAGGAGGAGGAGAGGTCCCAGCAACGCGAGCGCCAGCAGGAGGAGGAGG
CCCGCCGCCGCGACGGTGTCAGCGAGGTGGCGGCGGCGGCGGTGGCGGCG
GCGGAACTGCCTTCTTCCCGTATGGACCTGCTGGCGCGGCTGGCAGGGTT
GGAGGAGCCCATGCCCGCCCGGCGCACCTCCACCGCCGTGTCTCTGAACT
CGTCGGCATCGCCACCGCCTTCGATCTCGGCCACGGCTAGGGTAACGAGG
TCGGTGACGAGGAACACGAGGTGGTCGTCGGCGTCGTCCGCGCCGGCGTC
CGCCACGGCGACTGAGGTCGTTGCTGCCGCCGCCATCCCCACGAGGGTTT
CTCCCCGTCGCACGAGGACGATGTCGGTGGCGTTGGAGCGGTGGGTAGCG
AGCGGCCAGGGCGGTGGTGGTGGGCCGTCTGCTTAGAAGGTGTTTGTTCC
TCCGCTGCCTTTTTGGGGGCTGAACGGCAGGCCTGGGAACGGGGTGACCA
CCCGTACAGGTTGGTGGACTGCTGTCGTCGATGACTGCCAGGCCTTCGGA
GGAAGAGGGAGAGCCGGCTGCTGCTGCTGCTGCTGCTGCTGTTTGCCAGG
GGAGAGCACGGCATCAACATGCCTTGCCGTGCTGTCGATGCTGCCGTTTT
GAATAGATAAGCCCCCGGGGGTAACTCTAGTTAGTCTCATCGGCCCGCGG
TACAGGTCGGCCCCTACACGCTTTGGACTGCCTGAGGGTGGCAGCGCTGT
TTGGGAAGGTGTCGATTTTTTGTGGTCGTGACGGCGGCAACCTAGTGAGC
CAGTGGCAATGCGGAAGTCTTGGCAGTCGTTGGGGAGCTTTGGCGGTGGA
GCACTCGGTGGTGGTGGTGGTGGTTCATCGGACAGATCAATCGGTCGATC
GACCTGACCCCGGATATCTCGTCCTCTCTCTTGGGATGGAGTGCGTGCCG
TCTTGGTGTGGGTCAAACAAAAGTGGATGACGGGACGGGATGTGGGGGTG
GGGGGGTAATCTTGGAGTAGCGGGGCAGAACACTTGTCGTGTCGACCCGT
TTGGGGTGTCCTCTGTCTGGTATGCAACCCCCCATGCCATCGGACCATGT
CCTCCAACCTGGTTGGATAGGTTGCATCCGGCCTCTTGTCCTTGCGGGCC
CCCTGGTGCTGTTTCGTCATGACGCACTGCGTTACGTCACGCAATGAAAA
GCGTTGGCTGATATTTTTCGGGGGTACGGTAGTGGGGTGCGGAGGATGCT
GGGCGGGCGTGCCTCAGGCGGTGGTGAGACGCAGCACGCTACATGGTACG
GAACGAGGGAGGAGCGGGATGGCAATGTGCTGCGATGGAAGCCGGGTGAC
GAACGCTATAGGCGACACATACGACGGCAGAGCCCGACAAAAAATAAAGA
AAATACGGTCTAAAACAAAGGGATACTCAACCCATAGGGTTACCGAAGGA
ACAGGAGGGGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14454:199..3309+ >mRNA_E-fasciculatus_F_contig14454.3233.1 ID=mRNA_E-fasciculatus_F_contig14454.3233.1|Name=mRNA_E-fasciculatus_F_contig14454.3233.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2790bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14454:199..3309+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGGAAGCGCTGCGGCAGCCCGCCAGGCGACCTTCGAGGCTTACGCCGT CCAGCACCAGGCCAACCTCCTCGCTACCCGCGCCCGGCGGGAAGCGGAGC TGCGGGACCAGCACCAGACCCAACTGACGGCCGCCCGCGAGGTGCAGCAG GCGGCGGCGCGGGCGCTGGCGGAGGCCCAGGCCAGGCAGGCGGCGGGGAC CCGGGCCCGCCAAGTCGCGGCGGCGGAGGCCAGAGCCGAGCAGGGGGGTA CGCCCCTGGGCGGCGTTTCGGCGTCGTATGATTCCGTGAACGCTGCTGCC GCCACCCCCGCCGCCGCAGCCCCCGCTGCCGCCGCCCCCACTGCCGCCGC CGCCCCCGCTGCCGCTGCTGCCGCTGCTACCCCTTCGGGTGCTGCGGCTC CTAGGGGTCCTAGGATGAGGTACACCGTTGCGGGGTTCACGAACGACAGC ATAATACCTCGGGGGCGATCGTTCGCCACTGCCGCGGAGGCGGCGGCCTT TTCTGCCGGCCACGCCTCGTACGCTGCCGCCGCCGCTGCCGCCGCCGCCG CTGCTCCTGAGCCCGCGAGCTCCAATTCTAGCATGACGCCCACCAACAGG CCTCGAACATTCGCCACTGCCGCCGCGGGCGCCGCTAACGCCGCTGCCGC CGCGCGTGCTGAGGCCAGGTCTGCAGCCACCGCCGCCGCTGCTGCCGCCG CCGCTGCCACCACTGCTTCGGAGCAGCTTCGCGCGCGGATGAGGGCGGAC GACCGCTCCCGCCGGCTGGGGGGGGACGAGGAGGAGGAGAGGTCGCGGCA GCGCGAGCGGCAGCAGGATCATGCCCGCCTCATGCGGGAAATGGACGCCG TGAACGCTGCCGCCTTCACTGAGAGTTTCGCTTATATGACCCGGGAAACG GAGCGGCTTCGGGCGCAGCAGCGGACGGCCGACCGCTCTCGCCGGCTGGG GGAGGGCGAGGAGGAGGAGGAGAGGTCCCAGCAACGCGAGCGCCAGCAGG AGGAGGAGGCCCGCCGCCGCGACGGTGTCAGCGAGGTGGCGGCGGCGGCG GTGGCGGCGGCGGAACTGCCTTCTTCCCGTATGGACCTGCTGGCGCGGCT GGCAGGGTTGGAGGAGCCCATGCCCGCCCGGCGCACCTCCACCGCCGTGT CTCTGAACTCGTCGGCATCGCCACCGCCTTCGATCTCGGCCACGGCTAGG GTAACGAGGTCGGTGACGAGGAACACGAGGTGGTCGTCGGCGTCGTCCGC GCCGGCGTCCGCCACGGCGACTGAGGTCGTTGCTGCCGCCGCCATCCCCA CGAGGGTTTCTCCCCGTCGCACGAGGACGATGTCGGTGGCGTTGGAGCGG TGGGTAGCGAGCGGCCAGGGCGGTGGTGGTGGGCCGTCTGCTTAGATGGG AAGCGCTGCGGCAGCCCGCCAGGCGACCTTCGAGGCTTACGCCGTCCAGC ACCAGGCCAACCTCCTCGCTACCCGCGCCCGGCGGGAAGCGGAGCTGCGG GACCAGCACCAGACCCAACTGACGGCCGCCCGCGAGGTGCAGCAGGCGGC GGCGCGGGCGCTGGCGGAGGCCCAGGCCAGGCAGGCGGCGGGGACCCGGG CCCGCCAAGTCGCGGCGGCGGAGGCCAGAGCCGAGCAGGGGGGTACGCCC CTGGGCGGCGTTTCGGCGTCGTATGATTCCGTGAACGCTGCTGCCGCCAC CCCCGCCGCCGCAGCCCCCGCTGCCGCCGCCCCCACTGCCGCCGCCGCCC CCGCTGCCGCTGCTGCCGCTGCTACCCCTTCGGGTGCTGCGGCTCCTAGG GGTCCTAGGATGAGGTACACCGTTGCGGGGTTCACGAACGACAGCATAAT ACCTCGGGGGCGATCGTTCGCCACTGCCGCGGAGGCGGCGGCCTTTTCTG CCGGCCACGCCTCGTACGCTGCCGCCGCCGCTGCCGCCGCCGCCGCTGCT CCTGAGCCCGCGAGCTCCAATTCTAGCATGACGCCCACCAACAGGCCTCG AACATTCGCCACTGCCGCCGCGGGCGCCGCTAACGCCGCTGCCGCCGCGC GTGCTGAGGCCAGGTCTGCAGCCACCGCCGCCGCTGCTGCCGCCGCCGCT GCCACCACTGCTTCGGAGCAGCTTCGCGCGCGGATGAGGGCGGACGACCG CTCCCGCCGGCTGGGGGGGGACGAGGAGGAGGAGAGGTCGCGGCAGCGCG AGCGGCAGCAGGATCATGCCCGCCTCATGCGGGAAATGGACGCCGTGAAC GCTGCCGCCTTCACTGAGAGTTTCGCTTATATGACCCGGGAAACGGAGCG GCTTCGGGCGCAGCAGCGGACGGCCGACCGCTCTCGCCGGCTGGGGGAGG GCGAGGAGGAGGAGGAGAGGTCCCAGCAACGCGAGCGCCAGCAGGAGGAG GAGGCCCGCCGCCGCGACGGTGTCAGCGAGGTGGCGGCGGCGGCGGTGGC GGCGGCGGAACTGCCTTCTTCCCGTATGGACCTGCTGGCGCGGCTGGCAG GGTTGGAGGAGCCCATGCCCGCCCGGCGCACCTCCACCGCCGTGTCTCTG AACTCGTCGGCATCGCCACCGCCTTCGATCTCGGCCACGGCTAGGGTAAC GAGGTCGGTGACGAGGAACACGAGGTGGTCGTCGGCGTCGTCCGCGCCGG CGTCCGCCACGGCGACTGAGGTCGTTGCTGCCGCCGCCATCCCCACGAGG GTTTCTCCCCGTCGCACGAGGACGATGTCGGTGGCGTTGGAGCGGTGGGT AGCGAGCGGCCAGGGCGGTGGTGGTGGGCCGTCTGCTTAG back to top
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