mRNA_E-fasciculatus_F_contig14445.3229.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14445.3229.1
Unique NamemRNA_E-fasciculatus_F_contig14445.3229.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Match: D8LGK3_ECTSI (Vta1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK3_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.290e-31
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 MAMSVPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRLYATEQAMKLQDNSEAG 165
            MAMS+PPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCR+YATEQAMKLQDNSEAG
Sbjct:    1 MAMSIPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKLQDNSEAG 55          
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Match: F0YCQ0_AURAN (Vta1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCQ0_AURAN)

HSP 1 Score: 53.1 bits (126), Expect = 9.850e-7
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 MAMSVPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRLYATEQAMKLQDNS 156
            ++ SVP  +K    +++RAE LD+A +P A VVAYHCR YA E  + L+D +
Sbjct:    3 LSSSVPADMKACKSFLQRAEELDRASDPNAKVVAYHCRQYAMELGIALRDRA 54          
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Match: A0A7S2R0K1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0K1_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.730e-6
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1
Query:    1 MAMSVPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRLYATEQAMKL 144
            M + VPP LK +TQ+VRRAE LD    PE+ VV+Y+ R YA +  + L
Sbjct:    1 MPLKVPPELKKITQFVRRAEELDSESSPESRVVSYYSRQYAVQMGLPL 48          
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Match: A0A7S2LH26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LH26_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.190e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    7 MSVPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRLYATEQAMKL 144
            + +PP LK +TQY+RRAE LD    +PE+ +VAY+CR YA +  + L
Sbjct:    4 LKIPPELKRITQYIRRAEELDNDKTKPESRLVAYYCRQYAVQSGISL 50          
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Match: W7TAT1_9STRA (Vacuolar protein sorting-associate Vta1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAT1_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 5.980e-6
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   10 SVPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRLYATEQAMKLQ 147
            +VPP LK +T ++RRAE LD+    P++ +VAY+CR +A +QAM L+
Sbjct:    9 TVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLR 55          
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Match: A0A7S4D8M6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8M6_HETAK)

HSP 1 Score: 50.4 bits (119), Expect = 7.540e-6
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   10 SVPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRLYATEQAMKL 144
            ++PP LKP+T Y+RRAE LD+    PE+ +VAY CR YA E  + L
Sbjct:    3 TIPPVLKPITSYIRRAEELDRDTSRPESVLVAYFCRSYAMELGIPL 48          
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Match: A0A7S2LHP1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHP1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 9.580e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    7 MSVPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRLYATEQAMKL 144
            + +PP LK +TQY+RRAE LD    +PE+ +VAY+CR YA +  + L
Sbjct:    4 LKIPPELKRITQYIRRAEELDNDKTKPESRLVAYYCRQYAVQSGISL 50          
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Match: A0A7S2RMG8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RMG8_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.760e-5
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   13 VPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRLYATEQAMKL 144
            +PP LK VT YVRRA+ +++  +P A V+AY+CR +A E  +K+
Sbjct:    4 IPPDLKAVTPYVRRAKEVEQTGDPRAYVIAYYCRTHAMELGLKI 47          
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Match: A0A7S1ZCU8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZCU8_TRICV)

HSP 1 Score: 49.7 bits (117), Expect = 1.800e-5
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 MAMSVPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRLYATEQAMKLQDNSE 159
            M + +PP LK +T +VRRAE LD+    PE+ VVAY+CR +A +  + L  ++E
Sbjct:    1 MPLKIPPELKKITTFVRRAEELDRDKANPESRVVAYYCRQFAVQAGIPLAASAE 54          
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Match: A0A4D9D241_9STRA (Vta1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D241_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.360e-5
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   10 SVPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRLYATEQAMKLQ 147
            +VPP LK +T ++RRAE LD+    P++ +VAY+CR +A +QAM L+
Sbjct:    9 TVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLR 55          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14445.3229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LGK3_ECTSI1.290e-3196.36Vta1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
F0YCQ0_AURAN9.850e-746.15Vta1 domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S2R0K1_9STRA2.730e-650.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2LH26_9STRA4.190e-648.94Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
W7TAT1_9STRA5.980e-648.94Vacuolar protein sorting-associate Vta1 n=1 Tax=Na... [more]
A0A7S4D8M6_HETAK7.540e-652.17Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2LHP1_9STRA9.580e-648.94Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2RMG8_9STRA1.760e-547.73Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1ZCU8_TRICV1.800e-544.44Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A4D9D241_9STRA2.360e-548.94Vta1 domain-containing protein n=1 Tax=Nannochloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14445contigE-fasciculatus_F_contig14445:829..996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.9326873-CDS-E-fasciculatus_F_contig14445:828..9961622927931.9326873-CDS-E-fasciculatus_F_contig14445:828..996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14445 829..996 -
1695995756.228583-CDS-E-fasciculatus_F_contig14445:828..9961695995756.228583-CDS-E-fasciculatus_F_contig14445:828..996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14445 829..996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14445.3229.1prot_E-fasciculatus_F_contig14445.3229.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14445 829..996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14445.3229.1

>prot_E-fasciculatus_F_contig14445.3229.1 ID=prot_E-fasciculatus_F_contig14445.3229.1|Name=mRNA_E-fasciculatus_F_contig14445.3229.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=56bp
MAMSVPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRLYATEQAMKLQD
NSEAG*
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mRNA from alignment at E-fasciculatus_F_contig14445:829..996-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14445.3229.1 ID=mRNA_E-fasciculatus_F_contig14445.3229.1|Name=mRNA_E-fasciculatus_F_contig14445.3229.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=168bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14445:829..996- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGATGTCTGTACCCCCCGGGCTGAAGCCCGTGACGCAGTACGTGCG CCGGGCGGAGAGGCTGGACAAGGCTCCCGAGCCGGAGGCGCCGGTGGTCG CTTACCACTGCCGGCTGTACGCGACCGAGCAGGCGATGAAGCTGCAGGAC AACTCCGAAGCGGGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14445:829..996-

>mRNA_E-fasciculatus_F_contig14445.3229.1 ID=mRNA_E-fasciculatus_F_contig14445.3229.1|Name=mRNA_E-fasciculatus_F_contig14445.3229.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14445:829..996- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGATGTCTGTACCCCCCGGGCTGAAGCCCGTGACGCAGTACGTGCG
CCGGGCGGAGAGGCTGGACAAGGCTCCCGAGCCGGAGGCGCCGGTGGTCG
CTTACCACTGCCGGCTGTACGCGACCGAGCAGGCGATGAAGCTGCAGGAC
AACTCCGAAGCGGGGTGAATGGCGATGTCTGTACCCCCCGGGCTGAAGCC
CGTGACGCAGTACGTGCGCCGGGCGGAGAGGCTGGACAAGGCTCCCGAGC
CGGAGGCGCCGGTGGTCGCTTACCACTGCCGGCTGTACGCGACCGAGCAG
GCGATGAAGCTGCAGGACAACTCCGAAGCGGGGTGA
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