mRNA_E-fasciculatus_F_contig14443.3228.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14443.3228.1
Unique NamemRNA_E-fasciculatus_F_contig14443.3228.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14443.3228.1 vs. uniprot
Match: A0A6H5JMH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.020e-14
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:    2 ALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEASGLLLAY 127
            ALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEA+GLLLAY
Sbjct:  394 ALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAY 435
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BLAST of mRNA_E-fasciculatus_F_contig14443.3228.1 vs. uniprot
Match: D7FPW8_ECTSI (RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW8_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 6.330e-14
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:    2 ALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEASGLLLAY 127
            ALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEA+GLLL+Y
Sbjct:  336 ALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLSY 377
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14443.3228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMH8_9PHAE3.020e-1497.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPW8_ECTSI6.330e-1495.24RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14443contigE-fasciculatus_F_contig14443:2436..3009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size500
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14443.3228.1prot_E-fasciculatus_F_contig14443.3228.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14443 2609..3009 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.8688385-UTR-E-fasciculatus_F_contig14443:2435..26081622927931.8688385-UTR-E-fasciculatus_F_contig14443:2435..2608Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14443 2436..2608 -
1695995756.1811392-UTR-E-fasciculatus_F_contig14443:2435..26081695995756.1811392-UTR-E-fasciculatus_F_contig14443:2435..2608Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14443 2436..2608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.8841934-CDS-E-fasciculatus_F_contig14443:2608..28081622927931.8841934-CDS-E-fasciculatus_F_contig14443:2608..2808Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14443 2609..2808 -
1695995756.1925886-CDS-E-fasciculatus_F_contig14443:2608..28081695995756.1925886-CDS-E-fasciculatus_F_contig14443:2608..2808Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14443 2609..2808 -
1622927931.8968704-CDS-E-fasciculatus_F_contig14443:2882..30091622927931.8968704-CDS-E-fasciculatus_F_contig14443:2882..3009Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14443 2883..3009 -
1695995756.212004-CDS-E-fasciculatus_F_contig14443:2882..30091695995756.212004-CDS-E-fasciculatus_F_contig14443:2882..3009Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14443 2883..3009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14443.3228.1

>prot_E-fasciculatus_F_contig14443.3228.1 ID=prot_E-fasciculatus_F_contig14443.3228.1|Name=mRNA_E-fasciculatus_F_contig14443.3228.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
CADLQGDREDDGAERRGHPEDGVPVDREAAGLGRGQRPAACLQREKERER
DGGGLRDSAVTYATRPCRQFCVITCLLFLWVGFISFTVSKSLGPFVICVC
VVCGVFTG*
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mRNA from alignment at E-fasciculatus_F_contig14443:2436..3009-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14443.3228.1 ID=mRNA_E-fasciculatus_F_contig14443.3228.1|Name=mRNA_E-fasciculatus_F_contig14443.3228.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=574bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14443:2436..3009- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCGCTGACCTTCAAGGAGATCGGGAGGACGATGGAGCTGAGCGCCGAGG
GCATCCGGAAGATGGTGTTCCGGTCGATCGCGAAGCTGCAGGCCTCGGAC
GAGGCCAGCGGCCTGCTGCTTGCCTACGCCGACCTGATTTGAGCTCTTCG
TTTGTTCCGTTTGTTTGGTGTTGTAAGAGGAAGTGAGAAAGGGAGAGAGA
GAGAGAGAGAAAGAGAGAGAGAGAGATGGGGGAGGGCTGAGAGACAGCGC
GGTGACTTACGCCACTCGCCCGTGTCGACAATTTTGCGTCATTACGTGTC
TGTTGTTTTTGTGGGTAGGTTTTATCTCCTTCACTGTAAGCAAGTCACTT
GGGCCTTTCGTTATTTGTGTGTGTGTGGTGTGTGGTGTGTTCACTGGGTG
ATGCTCTCGACAATAAAGAAATCCCCGCTCGGTGGTGGGGTTGTGATGAT
ACCGTGTCGCGTGCAGCGCACCACTTGATTTTGTAAGTTTGCCTTTTGAT
GGTGTGTTTTTTTTGTGTGGGGGCAGAGCATGACAGCATGAAGTGTGGTG
GGAAAAGGTTGGCAGACGTGGTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14443:2436..3009-

>mRNA_E-fasciculatus_F_contig14443.3228.1 ID=mRNA_E-fasciculatus_F_contig14443.3228.1|Name=mRNA_E-fasciculatus_F_contig14443.3228.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14443:2436..3009- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCGCTGACCTTCAAGGAGATCGGGAGGACGATGGAGCTGAGCGCCGAGG
GCATCCGGAAGATGGTGTTCCGGTCGATCGCGAAGCTGCAGGCCTCGGAC
GAGGCCAGCGGCCTGCTGCTTGCCTACTGCGCTGACCTTCAAGGAGATCG
GGAGGACGATGGAGCTGAGCGCCGAGGGCATCCGGAAGATGGTGTTCCGG
TCGATCGCGAAGCTGCAGGCCTCGGACGAGGCCAGCGGCCTGCTGCTTGC
CTACAGAGAGAGAAAGAGAGAGAGAGAGATGGGGGAGGGCTGAGAGACAG
CGCGGTGACTTACGCCACTCGCCCGTGTCGACAATTTTGCGTCATTACGT
GTCTGTTGTTTTTGTGGGTAGGTTTTATCTCCTTCACTGTAAGCAAGTCA
CTTGGGCCTTTCGTTATTTGTGTGTGTGTGGTGTGTGGTGTGTTCACTGG
GTGAAGAGAGAGAAAGAGAGAGAGAGAGATGGGGGAGGGCTGAGAGACAG
CGCGGTGACTTACGCCACTCGCCCGTGTCGACAATTTTGCGTCATTACGT
GTCTGTTGTTTTTGTGGGTAGGTTTTATCTCCTTCACTGTAAGCAAGTCA
CTTGGGCCTTTCGTTATTTGTGTGTGTGTGGTGTGTGGTGTGTTCACTGG
GTGA
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