mRNA_E-fasciculatus_F_contig1444.3225.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1444.3225.1 vs. uniprot
Match: D8LDM5_ECTSI (UCH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM5_ECTSI) HSP 1 Score: 386 bits (991), Expect = 1.130e-133 Identity = 195/244 (79.92%), Postives = 208/244 (85.25%), Query Frame = 1
Query: 28 LRHHHGRVLSNPAGDSQPPPDGEPCPGAPSVPRIIPNHRGMTNRANDCFLLSAIQMMRALPMCHAALLNFPDAARPTPPPGKELTWAVSRTMRALQQSGGTAGPLNPTELIGTFFTVFNETMA-NGEEDDLANTIGTILDKIHSETVDEGSQSSLVDSARGQMETWTICQMCQVEKRKSSPRTSFSKNEVMLSVENWSVIPPELIVSVGRFQRTWSGGYTKVKDRIAVDMRLDKRAIFGGDQTF 756
LRHHHGRVLSNP GD QPPPDG+ CPGAPSVPRIIPNHRGM NR NDCFLLSAIQM+RALP+CHAA+LNFPDA PP GKELTWAVSRTMRALQ+SGGTA PLNPTELIGTFF VF+ M +GE+DDLANTIGTILDK+HSETVD SQSSLVDSARGQMET T CQMC EK K +PRTSFSKNEVMLS E WSVIPPELIVSVGRFQRT GGY K KD++AVD+ LDK FG D TF
Sbjct: 3 LRHHHGRVLSNPPGDPQPPPDGKSCPGAPSVPRIIPNHRGMINRENDCFLLSAIQMIRALPICHAAILNFPDATELAPPRGKELTWAVSRTMRALQESGGTASPLNPTELIGTFFNVFSGNMVQDGEQDDLANTIGTILDKVHSETVDAESQSSLVDSARGQMETRTFCQMCHAEKNKRTPRTSFSKNEVMLSKEKWSVIPPELIVSVGRFQRTLCGGYIKAKDKVAVDLLLDKTVSFG-DTTF 245 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1444.3225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1444.3225.1 >prot_E-fasciculatus_F_contig1444.3225.1 ID=prot_E-fasciculatus_F_contig1444.3225.1|Name=mRNA_E-fasciculatus_F_contig1444.3225.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=259bp MLTVVVHTPLRHHHGRVLSNPAGDSQPPPDGEPCPGAPSVPRIIPNHRGMback to top mRNA from alignment at E-fasciculatus_F_contig1444:3116..8370+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1444.3225.1 ID=mRNA_E-fasciculatus_F_contig1444.3225.1|Name=mRNA_E-fasciculatus_F_contig1444.3225.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5255bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1444:3116..8370+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1444:3116..8370+ >mRNA_E-fasciculatus_F_contig1444.3225.1 ID=mRNA_E-fasciculatus_F_contig1444.3225.1|Name=mRNA_E-fasciculatus_F_contig1444.3225.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1444:3116..8370+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |