mRNA_E-fasciculatus_F_contig1444.3226.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1444.3226.1
Unique NamemRNA_E-fasciculatus_F_contig1444.3226.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1444.3226.1 vs. uniprot
Match: A0A6H5JGB4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGB4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 7.920e-27
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:    5 QRQRASTALEEVREEERAPAPQKFQPFLQQEPVPQSFGSSMLQSMTWGVGMALAFTAVGMMFR 193
            QR RASTALEEVREEERAPA  KFQPFLQQ+P PQ+FGSSMLQSMTWGVGMALAFTAVGMMFR
Sbjct:   38 QRPRASTALEEVREEERAPAAPKFQPFLQQDPAPQTFGSSMLQSMTWGVGMALAFTAVGMMFR 100
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1444.3226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGB4_9PHAE7.920e-2790.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1444contigE-fasciculatus_F_contig1444:12156..13688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size750
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1444.3226.1prot_E-fasciculatus_F_contig1444.3226.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1444 12156..13369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.399263-CDS-E-fasciculatus_F_contig1444:12155..123011622927931.399263-CDS-E-fasciculatus_F_contig1444:12155..12301Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1444 12156..12301 +
1695995755.9611373-CDS-E-fasciculatus_F_contig1444:12155..123011695995755.9611373-CDS-E-fasciculatus_F_contig1444:12155..12301Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1444 12156..12301 +
1622927931.417321-CDS-E-fasciculatus_F_contig1444:13086..133691622927931.417321-CDS-E-fasciculatus_F_contig1444:13086..13369Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1444 13087..13369 +
1695995755.969394-CDS-E-fasciculatus_F_contig1444:13086..133691695995755.969394-CDS-E-fasciculatus_F_contig1444:13086..13369Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1444 13087..13369 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.4322183-UTR-E-fasciculatus_F_contig1444:13369..136881622927931.4322183-UTR-E-fasciculatus_F_contig1444:13369..13688Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1444 13370..13688 +
1695995755.9779675-UTR-E-fasciculatus_F_contig1444:13369..136881695995755.9779675-UTR-E-fasciculatus_F_contig1444:13369..13688Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1444 13370..13688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1444.3226.1

>prot_E-fasciculatus_F_contig1444.3226.1 ID=prot_E-fasciculatus_F_contig1444.3226.1|Name=mRNA_E-fasciculatus_F_contig1444.3226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=143bp
AATAAGLDCTRGSARGRARSSPPEIPAISSAGTRAAELRKQHAAVHDVGC
WHGSGFHRRGHDVPVKESTAPSPRDCNIQLPLLLCGHHHRIARHLQHGRE
MADVSPPCPGRARSLQTDWDQALQGARGASSCDTLQARLGSH*
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mRNA from alignment at E-fasciculatus_F_contig1444:12156..13688+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1444.3226.1 ID=mRNA_E-fasciculatus_F_contig1444.3226.1|Name=mRNA_E-fasciculatus_F_contig1444.3226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1533bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1444:12156..13688+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCAACGGCAGCGGGCCTCGACTGCACTCGAGGAAGTGCGAGAGGAAG
AGCGCGCTCCAGCCCCCCAGAAATTCCAGCCATTTCTTCAGCAGGAACCC
GTGCCGCAGAGCTTCGGAAGCAGCATGCTGCAGTCCATGACGTGGGGTGA
GGAAGCACGGCCTTCTCGAAAGTGTCTGGCAAACGTGTTGGTGGTATGAT
AAGTACGGCAACATAAGGCACAACGCGTCGGCGTGAAGCTAAGAGGTTAG
GGAAGGGTTGCGCGAAGACCAGTATGGGCTCATTTTTTTTTGCCACGCCC
CGGCGGGCTGCGGTGCCTCCAACCGTAGTTGCGACGGACACTCTTTTGCG
TGCGATAGCAGGACATCCAGGCCAAAACTATCAGGAGCATCAGGAGTTGT
ACCACCTTCACAATCATCTTAATTTCGAGAAATAGACGTGTGCCTAGGGT
CGAAACTTGAAAATTCCGTGTCTCTACCTAAATCGGCGGTGAGACCTCCT
GTGGAGTCGCTGCGGATGTTCATCATACGTGAGATGACCTCGTCGAAATT
GTCACCGACGAAAAACGTACGTGTACTGAAAACTCGTGCGTTGTACGTTG
TGCGATTGGCAGGTGTTTGCTTCGACCGAATCATTTTCATTTAACGGTAG
CTTTTTTTAGCACACCAAGGCATGCCAATCGGGCGATCCTCATGTCGAGC
GGGGGTGTCGCAAGGATCGAAATGTCACCCATCGAACTCAACCTTTTCAC
GACTTGCTTGTTTGTTCCCGTTGGTGTCTTGGTCCATTCCATGCCTTTGC
GAGGCAACTGCTATCGTTGAGACCCAACCCAACGTGCGCAGACATGTACT
CTTGCACGCGTCGAGTCTATTCGTAGCACGCACGCAAGCTTACCACCCTC
TCTGGCTTCCTCCCTGCTTGTGCTCACCCAGGTGTTGGCATGGCTCTGGC
TTTCACCGCCGTGGGCATGATGTTCCGGTGAAAGAAAGCACCGCACCCTC
GCCGAGAGACTGCAACATCCAACTCCCTCTGCTGCTCTGCGGGCATCATC
ATCGGATAGCACGGCACCTCCAACACGGGCGCGAAATGGCTGATGTTTCG
CCCCCGTGTCCCGGTAGAGCGCGCTCCCTTCAGACAGATTGGGATCAGGC
CTTACAAGGTGCTCGAGGCGCATCCAGTTGTGATACTTTGCAGGCTCGCT
TGGGCTCGCACTAGTTTTCGTACCGGTTTGTTTTTAGAGGGGGACTTGAG
GGATACGAGGAGGAACAAGCGCCACCCGCTCCAGGCCAGGGTCGCCTCGC
TCGGCAATGGCGTGGTGTTAACGTCCCTTCAAAGTCTCGTTCAGCAGTAT
GGCAACGGCGGCGCACAACGCAGAGTCGGAAAAGATTGTCTAGCGGTAAA
CCTTGCATTATTTCGTGTTTTGTGTGCATAATATTTTGTCTTGCGTGGAT
GGGTTTCCGATTGGAGCTTTAGCAAGGCTTAGAACGATGGTGATGGTGAT
GATTTGGCCAAATTGCGTCGTCCGGAAAGGGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1444:12156..13688+

>mRNA_E-fasciculatus_F_contig1444.3226.1 ID=mRNA_E-fasciculatus_F_contig1444.3226.1|Name=mRNA_E-fasciculatus_F_contig1444.3226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1444:12156..13688+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCAACGGCAGCGGGCCTCGACTGCACTCGAGGAAGTGCGAGAGGAAG
AGCGCGCTCCAGCCCCCCAGAAATTCCAGCCATTTCTTCAGCAGGAACCC
GTGCCGCAGAGCTTCGGAAGCAGCATGCTGCAGTCCATGACGTGGGGCAG
CAACGGCAGCGGGCCTCGACTGCACTCGAGGAAGTGCGAGAGGAAGAGCG
CGCTCCAGCCCCCCAGAAATTCCAGCCATTTCTTCAGCAGGAACCCGTGC
CGCAGAGCTTCGGAAGCAGCATGCTGCAGTCCATGACGTGGGGTGTTGGC
ATGGCTCTGGCTTTCACCGCCGTGGGCATGATGTTCCGGTGAAAGAAAGC
ACCGCACCCTCGCCGAGAGACTGCAACATCCAACTCCCTCTGCTGCTCTG
CGGGCATCATCATCGGATAGCACGGCACCTCCAACACGGGCGCGAAATGG
CTGATGTTTCGCCCCCGTGTCCCGGTAGAGCGCGCTCCCTTCAGACAGAT
TGGGATCAGGCCTTACAAGGTGCTCGAGGCGCATCCAGTTGTGATACTTT
GCAGGCTCGCTTGGGCTCGCACTAGGTGTTGGCATGGCTCTGGCTTTCAC
CGCCGTGGGCATGATGTTCCGGTGAAAGAAAGCACCGCACCCTCGCCGAG
AGACTGCAACATCCAACTCCCTCTGCTGCTCTGCGGGCATCATCATCGGA
TAGCACGGCACCTCCAACACGGGCGCGAAATGGCTGATGTTTCGCCCCCG
TGTCCCGGTAGAGCGCGCTCCCTTCAGACAGATTGGGATCAGGCCTTACA
AGGTGCTCGAGGCGCATCCAGTTGTGATACTTTGCAGGCTCGCTTGGGCT
CGCACTAG
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