mRNA_E-fasciculatus_F_contig14438.3224.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14438.3224.1
Unique NamemRNA_E-fasciculatus_F_contig14438.3224.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14438.3224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14438contigE-fasciculatus_F_contig14438:2376..3305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size412
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14438.3224.1prot_E-fasciculatus_F_contig14438.3224.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14438 3099..3305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.3167636-UTR-E-fasciculatus_F_contig14438:2375..25281622927931.3167636-UTR-E-fasciculatus_F_contig14438:2375..2528Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14438 2376..2528 +
1695995755.933523-UTR-E-fasciculatus_F_contig14438:2375..25281695995755.933523-UTR-E-fasciculatus_F_contig14438:2375..2528Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14438 2376..2528 +
1622927931.3350399-UTR-E-fasciculatus_F_contig14438:3046..30981622927931.3350399-UTR-E-fasciculatus_F_contig14438:3046..3098Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14438 3047..3098 +
1695995755.9428988-UTR-E-fasciculatus_F_contig14438:3046..30981695995755.9428988-UTR-E-fasciculatus_F_contig14438:3046..3098Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14438 3047..3098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.352034-CDS-E-fasciculatus_F_contig14438:3098..33051622927931.352034-CDS-E-fasciculatus_F_contig14438:3098..3305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14438 3099..3305 +
1695995755.9523773-CDS-E-fasciculatus_F_contig14438:3098..33051695995755.9523773-CDS-E-fasciculatus_F_contig14438:3098..3305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14438 3099..3305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14438.3224.1

>prot_E-fasciculatus_F_contig14438.3224.1 ID=prot_E-fasciculatus_F_contig14438.3224.1|Name=mRNA_E-fasciculatus_F_contig14438.3224.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MSTSCAQQVVELPPAWAGTPTAATPIVTTNSRSAERRYRKNVKRKAARVK
KYERKRETCSRQGNEADSR
back to top

mRNA from alignment at E-fasciculatus_F_contig14438:2376..3305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14438.3224.1 ID=mRNA_E-fasciculatus_F_contig14438.3224.1|Name=mRNA_E-fasciculatus_F_contig14438.3224.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=930bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14438:2376..3305+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTCCACACAGGACAGCGCGTACGGTCGCAACCTGCGCGAGAAGCATATT
CTCGGCATAGAAGCACGAGCTGAGGTATATACGCGCACGTGCCGAGGTAG
GAGAGGCGCGTTCTACACCACACAACGCAGAGAGAGAGCGAATCTGAGGA
GAGGTGAGAGACAGAAGTTACCGGCAAGACTAGACTAAGTCTAAGACCAC
CGTTGTTGTTGAGCGATGGAGAGGGAATCTGGGCGGGTTGCATGATCAGT
CCTCTTAACAGCAGTGCGCGATGCCACAGCCCGACCTTGGCGCTTGAACA
GCTGATGGCCATGGGGTTCTAGCAGTAGGTCGACCGTAGGGTGGCCAGAC
GCGCCTGAACTACTGCTGTACAACTTAGACCGCACACAGATATTATGCGA
GACTCGGAGTAGATGTTTCACAGCCGGCGCGTTTCACACATACGGCTGTA
TGCTGGAGCAGGGCGAGGCAAACCACCGGGTGCGCCCGTCCTCAGACCGA
GAGGAACGTGACATCATAAGGTTCAGGACGATGGCTCGTGAGTGACCGAG
AACTCAAAAGGGGCCCGCTTTTCATCAGAGGCTTCTTTCTCTTTCATAGC
AGACGCATCTCCTCATGGGCTGAGTCAAGCAAACGTTCCCTTTGTACTTC
AAAATCTCGTCGCCCCTACAGCAGTACATGCTCACCTGAACAGCCCTTCA
AAGGGAAGTGAAGATCGAGCGCCATGAGCACGTCATGTGCCCAGCAAGTT
GTAGAGCTTCCACCAGCGTGGGCGGGCACCCCCACTGCCGCCACGCCCAT
CGTCACTACCAACAGCAGATCGGCGGAGAGGAGGTACAGAAAGAACGTGA
AGAGAAAGGCTGCAAGAGTGAAAAAATATGAGCGAAAACGGGAGACCTGC
TCGCGACAAGGCAACGAAGCGGATTCGAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14438:2376..3305+

>mRNA_E-fasciculatus_F_contig14438.3224.1 ID=mRNA_E-fasciculatus_F_contig14438.3224.1|Name=mRNA_E-fasciculatus_F_contig14438.3224.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14438:2376..3305+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCACGTCATGTGCCCAGCAAGTTGTAGAGCTTCCACCAGCGTGGGC
GGGCACCCCCACTGCCGCCACGCCCATCGTCACTACCAACAGCAGATCGG
CGGAGAGGAGGTACAGAAAGAACGTGAAGAGAAAGGCTGCAAGAGTGAAA
AAATATGAGCGAAAACGGGAGACCTGCTCGCGACAAGGCAACGAAGCGGA
TTCGAGGATGAGCACGTCATGTGCCCAGCAAGTTGTAGAGCTTCCACCAG
CGTGGGCGGGCACCCCCACTGCCGCCACGCCCATCGTCACTACCAACAGC
AGATCGGCGGAGAGGAGGTACAGAAAGAACGTGAAGAGAAAGGCTGCAAG
AGTGAAAAAATATGAGCGAAAACGGGAGACCTGCTCGCGACAAGGCAACG
AAGCGGATTCGAGG
back to top