mRNA_E-fasciculatus_F_contig14437.3223.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14437.3223.1
Unique NamemRNA_E-fasciculatus_F_contig14437.3223.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14437.3223.1 vs. uniprot
Match: A0A6H5K7C9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7C9_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.970e-38
Identity = 78/88 (88.64%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:   46 MGRILRSMVARTTWVVLGVQLLAGLCEGSAFASGATGTPAHAGGGSNAQGNGGRAGAGAAMSSKTSSLLSSAKSGVRDFFATASSASD 309
            MG I R+MV RTTW+VLGVQLLAGLCEGSAFAS A GTP HA GGSNAQGNGGRAGAGAAMS+KTSSLLSSAKSGVRDFFATASSASD
Sbjct:    1 MGCIRRAMVTRTTWIVLGVQLLAGLCEGSAFASSAAGTPTHA-GGSNAQGNGGRAGAGAAMSAKTSSLLSSAKSGVRDFFATASSASD 87
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14437.3223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7C9_9PHAE1.970e-3888.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14437contigE-fasciculatus_F_contig14437:1923..3235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.2403774-CDS-E-fasciculatus_F_contig14437:1922..20371622927931.2403774-CDS-E-fasciculatus_F_contig14437:1922..2037Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14437 1923..2037 +
1695995755.9135036-CDS-E-fasciculatus_F_contig14437:1922..20371695995755.9135036-CDS-E-fasciculatus_F_contig14437:1922..2037Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14437 1923..2037 +
1622927931.2582586-CDS-E-fasciculatus_F_contig14437:3035..32351622927931.2582586-CDS-E-fasciculatus_F_contig14437:3035..3235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14437 3036..3235 +
1695995755.9244275-CDS-E-fasciculatus_F_contig14437:3035..32351695995755.9244275-CDS-E-fasciculatus_F_contig14437:3035..3235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14437 3036..3235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14437.3223.1prot_E-fasciculatus_F_contig14437.3223.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14437 1923..3235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14437.3223.1

>prot_E-fasciculatus_F_contig14437.3223.1 ID=prot_E-fasciculatus_F_contig14437.3223.1|Name=mRNA_E-fasciculatus_F_contig14437.3223.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
RGGVPPCRARQGRIPMGRILRSMVARTTWVVLGVQLLAGLCEGSAFASGA
TGTPAHAGGGSNAQGNGGRAGAGAAMSSKTSSLLSSAKSGVRDFFATASS
ASDR*
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mRNA from alignment at E-fasciculatus_F_contig14437:1923..3235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14437.3223.1 ID=mRNA_E-fasciculatus_F_contig14437.3223.1|Name=mRNA_E-fasciculatus_F_contig14437.3223.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1313bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14437:1923..3235+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGGGCGGCGTGCCCCCCTGCAGAGCGAGGCAAGGGAGGATTCCGATGGG
TCGCATCCTGAGGTCTATGGTGGCACGAACGACATGGGTCGTGCTGGGCG
TGCAGCTGCTCGCGGGTGAGTGCAACCAGCCGCTTGTACGACTCGATGGG
CGTGTGCGTCCTCGGCCTACACCAAAGACAGCTACAACAGCAGCAGTGTA
CGTAGTTCATGTTGTTGGCGTGCTTGCGGTGGGGTACGGCAGCAGGCCAG
TGTGCCTGGACAGCAGCAGCGGCGGTGGTGCTAGCTGCAGCGTGCAGTCC
CTGCTTCCTGGAAAACGCCGGGCATCATCGGCGACAAGCGAGGAGAGTTT
TGAATTTTGGTGGGAGCAGGAGTGAAACATCTCAGTTGTGTGTAGCTAGT
TGTGTGCCGTTTTTGCACCCACCCTGCATACTTCAACAGCTGCCCACCTT
GGCGCCCTGTGGATGATACGATTTCAGCCGGCAGGAGAACATGCTTGCAT
GTCGCGGTCGCGCTGCCTGCGTTCGTTATTCAGTCCTAAGGAAGTGGCTA
TAGGGAATAAATGCGTCTCAAGCTGAACGTTGCATTGCTGCATGCGTTCG
CTACAATCTTTTCCCCAGATCTCAGGATTGTACGATTCACACGCATTTAT
TTGGAGGGGCAGAGAGCCAACAACATTGACCACTACTACTTACGCTGCTG
CTCCCAAACGGTAGAGTGCGCACTTTGTTCCGTGAAGCGTTGATGATGCT
TCTCGTCTCGCGAGGCGCCGCCGTTACCGATGGTGTGAAAGCACCTTTCG
TTCCCAGCTGCTCTCCTGTGTCTGTTTCACCGACATACTCCACTAACACT
CTCTCCTGTCCTCGGCGTTTTTGACAAGCAACTGCTAAAGCCCTCCCTAA
ACAGCAGCAGCGTAGTTGGCAGTAGGCATCTGTTGACGGAAGTCCTGTTT
GGTTATGCAGATGACGCGCGCTCAAGAGGTGTGCGGTACTACCAGCGATA
CCCATACATAGCTGCGAAAAATAGGACACCCTTCGAAAATTGACACTATA
ATAAAGAAGGCGTCGTCCCCCTTCACTCATTCGCCCAATCATGTTCTCTT
CTCGTTCGGAAAGGATTGTGCGAGGGCTCAGCGTTCGCGTCAGGCGCCAC
CGGCACGCCGGCCCACGCGGGGGGGGGGAGCAACGCCCAAGGAAATGGCG
GGAGGGCAGGGGCAGGGGCGGCGATGTCCTCAAAGACGTCTTCGCTGCTG
TCGTCCGCGAAGAGCGGCGTGAGAGACTTCTTCGCCACGGCCTCGTCCGC
TAGCGACAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14437:1923..3235+

>mRNA_E-fasciculatus_F_contig14437.3223.1 ID=mRNA_E-fasciculatus_F_contig14437.3223.1|Name=mRNA_E-fasciculatus_F_contig14437.3223.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14437:1923..3235+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGGGCGGCGTGCCCCCCTGCAGAGCGAGGCAAGGGAGGATTCCGATGGG
TCGCATCCTGAGGTCTATGGTGGCACGAACGACATGGGTCGTGCTGGGCG
TGCAGCTGCTCGCGGCGGGGCGGCGTGCCCCCCTGCAGAGCGAGGCAAGG
GAGGATTCCGATGGGTCGCATCCTGAGGTCTATGGTGGCACGAACGACAT
GGGTCGTGCTGGGCGTGCAGCTGCTCGCGGGATTGTGCGAGGGCTCAGCG
TTCGCGTCAGGCGCCACCGGCACGCCGGCCCACGCGGGGGGGGGGAGCAA
CGCCCAAGGAAATGGCGGGAGGGCAGGGGCAGGGGCGGCGATGTCCTCAA
AGACGTCTTCGCTGCTGTCGTCCGCGAAGAGCGGCGTGAGAGACTTCTTC
GCCACGGCCTCGTCCGCTAGCGACAGGTGAGATTGTGCGAGGGCTCAGCG
TTCGCGTCAGGCGCCACCGGCACGCCGGCCCACGCGGGGGGGGGGAGCAA
CGCCCAAGGAAATGGCGGGAGGGCAGGGGCAGGGGCGGCGATGTCCTCAA
AGACGTCTTCGCTGCTGTCGTCCGCGAAGAGCGGCGTGAGAGACTTCTTC
GCCACGGCCTCGTCCGCTAGCGACAGGTGA
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