mRNA_E-fasciculatus_F_contig14430.3222.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14430.3222.1
Unique NamemRNA_E-fasciculatus_F_contig14430.3222.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 4.130e-37
Identity = 60/102 (58.82%), Postives = 81/102 (79.41%), Query Frame = 1
Query:   19 AMANSLPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADDRLSTIFHPSF 324
            ++A+SLP MMYG GD++HPLPETV  MQE+V +YV +VT +AC AA+++G LDTECF  AVR+D+ K KRVK +LD ++ IK+CTR R  DD L T++HP+F
Sbjct:   23 SIADSLPMMMYGFGDEQHPLPETVAYMQEVVGEYVQYVTDKACKAAEVKGKLDTECFVLAVRNDKAKFKRVKELLDMNVHIKNCTRQRYVDDNL-TVYHPTF 123          
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: D8LPL2_ECTSI (EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL2_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.550e-17
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   43 MMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAA 156
            MMYGAGDDEHPLPETVGCMQ+LVA+YVSHVTSEACL +
Sbjct:    1 MMYGAGDDEHPLPETVGCMQQLVAEYVSHVTSEACLVS 38          
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: Q8QN96_ESV1K (EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN96_ESV1K)

HSP 1 Score: 75.9 bits (185), Expect = 4.520e-16
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   43 MMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAA 156
            MMYGAGDDEHPLPETV CMQ+LVA+YVSHVTSEACL +
Sbjct:    9 MMYGAGDDEHPLPETVACMQQLVAEYVSHVTSEACLVS 46          
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: Q8QN93_ESV1K (EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN93_ESV1K)

HSP 1 Score: 75.9 bits (185), Expect = 7.850e-16
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   40 AMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAA 156
            +MMYGAGDDEHPLPETV CMQ+LVA+YVSHVTSEACL +
Sbjct:   31 SMMYGAGDDEHPLPETVDCMQQLVAEYVSHVTSEACLVS 69          
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: UPI000C1CFECD (transcription initiation factor TFIID subunit 13-like isoform X1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CFECD)

HSP 1 Score: 73.2 bits (178), Expect = 3.490e-14
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   34 LPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADD-RLSTI 309
            L  MMYG GD+++PLPETV  ++++V +YV+ +  +A   A  RG L TE F F +R D PKL R   +L  +  +K   +A   D+ +L+TI
Sbjct:   35 LQHMMYGFGDNQNPLPETVALVEDIVVEYVTDLVHKAQDTASKRGKLLTEDFLFLIRKDVPKLNRCTELLSMNEELKQARKAFEVDEEKLATI 127          
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: A0A6I9TB08_SESIN (transcription initiation factor TFIID subunit 13 n=5 Tax=Lamiales TaxID=4143 RepID=A0A6I9TB08_SESIN)

HSP 1 Score: 72.0 bits (175), Expect = 9.830e-14
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   34 LPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADD-RLSTI 309
            L  MMYG GDD++PLPETV   +++V +YV+ +  +A   A  RG L TE F F +R D PKL R   +L  +  +K   +A   D+ +L++I
Sbjct:   35 LQHMMYGFGDDQNPLPETVALAEDIVVEYVTDMVHKAQDIASKRGKLLTEDFLFLIRKDLPKLNRCTELLSMNEELKQARKAFEVDEEKLASI 127          
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: C1E6J7_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E6J7_MICCC)

HSP 1 Score: 72.8 bits (177), Expect = 1.680e-13
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   19 AMANSLPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTR 276
            ++A  L  MMYG GD E+PLPETV  ++EL   Y++    +A  AA+ RG L TE   + +RHDE KL R   +L+ + ++K   +
Sbjct:   81 SLAKDLRYMMYGFGDAENPLPETVDLVEELTIDYLTKFAKKAMEAANRRGRLQTEDLLYVIRHDEKKLARCMELLEMNEQLKEARK 166          
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: UPI00053FB6EB (transcription initiation factor TFIID subunit 13 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FB6EB)

HSP 1 Score: 70.9 bits (172), Expect = 2.830e-13
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   34 LPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADD-RLSTI 309
            L  MMYG GDD++PLPE+V  ++++V +YV+ +  +A   A  RG L TE F F +R D PKL R   +L  +  +K   +A   D+ +L T+
Sbjct:   36 LQHMMYGYGDDQNPLPESVALVEDIVVEYVTDLVYKAQDVASKRGKLLTEDFMFLIRKDLPKLNRCTELLAMNEELKQARKAFDMDEEKLGTV 128          
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: M5X1F9_PRUPE (Uncharacterized protein n=10 Tax=Rosales TaxID=3744 RepID=M5X1F9_PRUPE)

HSP 1 Score: 70.1 bits (170), Expect = 9.110e-13
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   34 LPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADD 294
            L  MMYG GDD++PLPE+V  M+++V +Y++ +  +A      RG L  E F + +R D PKL R + +L  +  +K   +A   D+
Sbjct:   35 LQHMMYGFGDDQNPLPESVALMEDIVVEYITDLVHKAQDIGSKRGKLSVEDFLYLIRKDFPKLNRCRELLSMNEELKQARKAFETDE 121          
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: A0A836CID2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.460e-12
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 1
Query:   19 AMANSLPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACL---AADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADDRLSTIFHPSFGAV-----APQQQTT 354
            A+ ++LP MMYG+GD + PL E+V  +  L+AQ++  +T  A     A D  G +DTE     +R D  KLKRV  +LD +  +K+ TR   +D+    ++     AV     +P QQ T
Sbjct:   49 AILSALPVMMYGSGDHDKPLRESVELVGALLAQHIKELTYRALRHADATDAPGRIDTETVIHIIRKDHAKLKRVSELLDFNKELKAVTRLHFSDET-DAVYDADATAVLELRHSPVQQQT 167          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXB5_ECTSI4.130e-3758.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LPL2_ECTSI4.550e-1789.47EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Q8QN96_ESV1K4.520e-1686.84EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
Q8QN93_ESV1K7.850e-1684.62EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
UPI000C1CFECD3.490e-1440.86transcription initiation factor TFIID subunit 13-l... [more]
A0A6I9TB08_SESIN9.830e-1440.86transcription initiation factor TFIID subunit 13 n... [more]
C1E6J7_MICCC1.680e-1340.70Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
UPI00053FB6EB2.830e-1339.78transcription initiation factor TFIID subunit 13 n... [more]
M5X1F9_PRUPE9.110e-1336.78Uncharacterized protein n=10 Tax=Rosales TaxID=374... [more]
A0A836CID2_9STRA3.460e-1235.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14430contigE-fasciculatus_F_contig14430:1135..1751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue7.8e-29
Seed eggNOG ortholog2880.D7FXB5
Preferred nameTAF13
KEGG koko:K00521,ko:K03127
KEGG Pathwayko03022,ko05168,map03022,map05168
GOsGO:0000003,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007275,GO:0008022,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009960,GO:0009966,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016070,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0022607,GO:0023051,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0048316,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061458,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG5248@1,KOG3901@2759
Ec32 ortholog descriptionEsV-1-193/196 Transcription initiation factor TFIID subunit 13
EC1.16.1.7
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-193/196
Ec32 orthologEc-06_004990.1
Exons3
Model size363
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14430.3222.1prot_E-fasciculatus_F_contig14430.3222.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14430 1135..1751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.1511614-CDS-E-fasciculatus_F_contig14430:1134..11751622927931.1511614-CDS-E-fasciculatus_F_contig14430:1134..1175Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14430 1135..1175 +
1695995755.8808467-CDS-E-fasciculatus_F_contig14430:1134..11751695995755.8808467-CDS-E-fasciculatus_F_contig14430:1134..1175Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14430 1135..1175 +
1622927931.172257-CDS-E-fasciculatus_F_contig14430:1298..14071622927931.172257-CDS-E-fasciculatus_F_contig14430:1298..1407Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14430 1299..1407 +
1695995755.8935268-CDS-E-fasciculatus_F_contig14430:1298..14071695995755.8935268-CDS-E-fasciculatus_F_contig14430:1298..1407Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14430 1299..1407 +
1622927931.190654-CDS-E-fasciculatus_F_contig14430:1538..17511622927931.190654-CDS-E-fasciculatus_F_contig14430:1538..1751Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14430 1539..1751 +
1695995755.903063-CDS-E-fasciculatus_F_contig14430:1538..17511695995755.903063-CDS-E-fasciculatus_F_contig14430:1538..1751Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14430 1539..1751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14430.3222.1

>prot_E-fasciculatus_F_contig14430.3222.1 ID=prot_E-fasciculatus_F_contig14430.3222.1|Name=mRNA_E-fasciculatus_F_contig14430.3222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp
MAGGSDAMANSLPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACL
AADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADDRL
STIFHPSFGAVAPQQQTTPS*
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mRNA from alignment at E-fasciculatus_F_contig14430:1135..1751+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14430.3222.1 ID=mRNA_E-fasciculatus_F_contig14430.3222.1|Name=mRNA_E-fasciculatus_F_contig14430.3222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=617bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14430:1135..1751+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGGAGGTAGCGACGCGATGGCGAACAGCTTACCAGCGTGAGTGAT TTCTTCAATGTTTATTTCGTTCGCGTGTATCCTCACAAATTTCTCAATTC ACAACACAATCAATGTTGTTTCGTGAGCGACTTGTACGCGTGCCACCGTT CGTTGTTGTTACAGGATGATGTACGGCGCCGGAGATGACGAACACCCGTT GCCGGAAACAGTCGGTTGTATGCAGGAGCTGGTCGCGCAGTATGTGAGCC ACGTCACATCCGAGGCTTGTTTGGTGAGTTTGTTGGAGTTTGGTGTTGAA ACTCAGATTGTTCGATTGATTGTGAATTGAAACTCAGATTGTTCGATTGA ATATTATTTTTGATATTTTCCGCCCCTGCATGTATGTGTTTGAAATAATA CCAGGCGGCCGACCTCAGGGGCAACCTGGATACGGAGTGCTTCTTCTTCG CCGTCCGCCATGATGAGCCCAAGTTAAAGCGGGTAAAGCACATCCTGGAC ACCGACTTGCGCATCAAGAGCTGTACGCGCGCGCGCTCCGCGGACGACAG GCTATCCACCATCTTTCACCCGTCGTTCGGAGCCGTGGCGCCACAGCAGC AGACGACACCGTCTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14430:1135..1751+

>mRNA_E-fasciculatus_F_contig14430.3222.1 ID=mRNA_E-fasciculatus_F_contig14430.3222.1|Name=mRNA_E-fasciculatus_F_contig14430.3222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14430:1135..1751+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGGAGGTAGCGACGCGATGGCGAACAGCTTACCAGCATGGCAGGA
GGTAGCGACGCGATGGCGAACAGCTTACCAGCGATGATGTACGGCGCCGG
AGATGACGAACACCCGTTGCCGGAAACAGTCGGTTGTATGCAGGAGCTGG
TCGCGCAGTATGTGAGCCACGTCACATCCGAGGCTTGTTTGGATGATGTA
CGGCGCCGGAGATGACGAACACCCGTTGCCGGAAACAGTCGGTTGTATGC
AGGAGCTGGTCGCGCAGTATGTGAGCCACGTCACATCCGAGGCTTGTTTG
GCGGCCGACCTCAGGGGCAACCTGGATACGGAGTGCTTCTTCTTCGCCGT
CCGCCATGATGAGCCCAAGTTAAAGCGGGTAAAGCACATCCTGGACACCG
ACTTGCGCATCAAGAGCTGTACGCGCGCGCGCTCCGCGGACGACAGGCTA
TCCACCATCTTTCACCCGTCGTTCGGAGCCGTGGCGCCACAGCAGCAGAC
GACACCGTCTTGAGCGGCCGACCTCAGGGGCAACCTGGATACGGAGTGCT
TCTTCTTCGCCGTCCGCCATGATGAGCCCAAGTTAAAGCGGGTAAAGCAC
ATCCTGGACACCGACTTGCGCATCAAGAGCTGTACGCGCGCGCGCTCCGC
GGACGACAGGCTATCCACCATCTTTCACCCGTCGTTCGGAGCCGTGGCGC
CACAGCAGCAGACGACACCGTCTTGA
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