mRNA_E-fasciculatus_F_contig14430.3222.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI) HSP 1 Score: 133 bits (334), Expect = 4.130e-37 Identity = 60/102 (58.82%), Postives = 81/102 (79.41%), Query Frame = 1
Query: 19 AMANSLPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADDRLSTIFHPSF 324
++A+SLP MMYG GD++HPLPETV MQE+V +YV +VT +AC AA+++G LDTECF AVR+D+ K KRVK +LD ++ IK+CTR R DD L T++HP+F
Sbjct: 23 SIADSLPMMMYGFGDEQHPLPETVAYMQEVVGEYVQYVTDKACKAAEVKGKLDTECFVLAVRNDKAKFKRVKELLDMNVHIKNCTRQRYVDDNL-TVYHPTF 123
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: D8LPL2_ECTSI (EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL2_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 4.550e-17 Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1
Query: 43 MMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAA 156
MMYGAGDDEHPLPETVGCMQ+LVA+YVSHVTSEACL +
Sbjct: 1 MMYGAGDDEHPLPETVGCMQQLVAEYVSHVTSEACLVS 38
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: Q8QN96_ESV1K (EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN96_ESV1K) HSP 1 Score: 75.9 bits (185), Expect = 4.520e-16 Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1
Query: 43 MMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAA 156
MMYGAGDDEHPLPETV CMQ+LVA+YVSHVTSEACL +
Sbjct: 9 MMYGAGDDEHPLPETVACMQQLVAEYVSHVTSEACLVS 46
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: Q8QN93_ESV1K (EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN93_ESV1K) HSP 1 Score: 75.9 bits (185), Expect = 7.850e-16 Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query: 40 AMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAA 156
+MMYGAGDDEHPLPETV CMQ+LVA+YVSHVTSEACL +
Sbjct: 31 SMMYGAGDDEHPLPETVDCMQQLVAEYVSHVTSEACLVS 69
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: UPI000C1CFECD (transcription initiation factor TFIID subunit 13-like isoform X1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CFECD) HSP 1 Score: 73.2 bits (178), Expect = 3.490e-14 Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 1
Query: 34 LPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADD-RLSTI 309
L MMYG GD+++PLPETV ++++V +YV+ + +A A RG L TE F F +R D PKL R +L + +K +A D+ +L+TI
Sbjct: 35 LQHMMYGFGDNQNPLPETVALVEDIVVEYVTDLVHKAQDTASKRGKLLTEDFLFLIRKDVPKLNRCTELLSMNEELKQARKAFEVDEEKLATI 127
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: A0A6I9TB08_SESIN (transcription initiation factor TFIID subunit 13 n=5 Tax=Lamiales TaxID=4143 RepID=A0A6I9TB08_SESIN) HSP 1 Score: 72.0 bits (175), Expect = 9.830e-14 Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1
Query: 34 LPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADD-RLSTI 309
L MMYG GDD++PLPETV +++V +YV+ + +A A RG L TE F F +R D PKL R +L + +K +A D+ +L++I
Sbjct: 35 LQHMMYGFGDDQNPLPETVALAEDIVVEYVTDMVHKAQDIASKRGKLLTEDFLFLIRKDLPKLNRCTELLSMNEELKQARKAFEVDEEKLASI 127
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: C1E6J7_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E6J7_MICCC) HSP 1 Score: 72.8 bits (177), Expect = 1.680e-13 Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 19 AMANSLPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTR 276
++A L MMYG GD E+PLPETV ++EL Y++ +A AA+ RG L TE + +RHDE KL R +L+ + ++K +
Sbjct: 81 SLAKDLRYMMYGFGDAENPLPETVDLVEELTIDYLTKFAKKAMEAANRRGRLQTEDLLYVIRHDEKKLARCMELLEMNEQLKEARK 166
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: UPI00053FB6EB (transcription initiation factor TFIID subunit 13 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FB6EB) HSP 1 Score: 70.9 bits (172), Expect = 2.830e-13 Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 1
Query: 34 LPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADD-RLSTI 309
L MMYG GDD++PLPE+V ++++V +YV+ + +A A RG L TE F F +R D PKL R +L + +K +A D+ +L T+
Sbjct: 36 LQHMMYGYGDDQNPLPESVALVEDIVVEYVTDLVYKAQDVASKRGKLLTEDFMFLIRKDLPKLNRCTELLAMNEELKQARKAFDMDEEKLGTV 128
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: M5X1F9_PRUPE (Uncharacterized protein n=10 Tax=Rosales TaxID=3744 RepID=M5X1F9_PRUPE) HSP 1 Score: 70.1 bits (170), Expect = 9.110e-13 Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 34 LPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLAADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADD 294
L MMYG GDD++PLPE+V M+++V +Y++ + +A RG L E F + +R D PKL R + +L + +K +A D+
Sbjct: 35 LQHMMYGFGDDQNPLPESVALMEDIVVEYITDLVHKAQDIGSKRGKLSVEDFLYLIRKDFPKLNRCRELLSMNEELKQARKAFETDE 121
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Match: A0A836CID2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID2_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.460e-12 Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 1
Query: 19 AMANSLPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACL---AADLRGNLDTECFFFAVRHDEPKLKRVKHILDTDLRIKSCTRARSADDRLSTIFHPSFGAV-----APQQQTT 354
A+ ++LP MMYG+GD + PL E+V + L+AQ++ +T A A D G +DTE +R D KLKRV +LD + +K+ TR +D+ ++ AV +P QQ T
Sbjct: 49 AILSALPVMMYGSGDHDKPLRESVELVGALLAQHIKELTYRALRHADATDAPGRIDTETVIHIIRKDHAKLKRVSELLDFNKELKAVTRLHFSDET-DAVYDADATAVLELRHSPVQQQT 167 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14430.3222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14430.3222.1 >prot_E-fasciculatus_F_contig14430.3222.1 ID=prot_E-fasciculatus_F_contig14430.3222.1|Name=mRNA_E-fasciculatus_F_contig14430.3222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp MAGGSDAMANSLPAMMYGAGDDEHPLPETVGCMQELVAQYVSHVTSEACLback to top mRNA from alignment at E-fasciculatus_F_contig14430:1135..1751+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14430.3222.1 ID=mRNA_E-fasciculatus_F_contig14430.3222.1|Name=mRNA_E-fasciculatus_F_contig14430.3222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=617bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14430:1135..1751+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14430:1135..1751+ >mRNA_E-fasciculatus_F_contig14430.3222.1 ID=mRNA_E-fasciculatus_F_contig14430.3222.1|Name=mRNA_E-fasciculatus_F_contig14430.3222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14430:1135..1751+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |