mRNA_E-fasciculatus_F_contig14430.3221.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14430.3221.1
Unique NamemRNA_E-fasciculatus_F_contig14430.3221.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Match: D8LPL1_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 3.550e-42
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:    4 VRRNKGMWTREEHDAFLGGLRQHGSNIHALALAVPTRSALQIRTHSQKYFDKIEGGMQFPAKPYPSQYDRTSGKSCIARGAYEYGAVQEQ 273
            +R+NKG WTREEH+AFL GL QH SN HAL   VPTRSALQIRTH+QKYFDKIE G +FPA+PYPSQYD  SGKSCIARGAYEYGAV +Q
Sbjct:    4 IRKNKGKWTREEHEAFLSGLWQHESNSHAL---VPTRSALQIRTHAQKYFDKIERGEKFPAQPYPSQYDAASGKSCIARGAYEYGAVNQQ 90
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BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Match: D7FXQ4_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ4_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.850e-24
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    4 VRRNKGMWTREEHDAFLGGLRQHG-SNIHALALAVPTRSALQIRTHSQKYFDKIEGGMQFPAKPYPSQYDRTSGKSCIARGAYEYGAVQEQ 273
            +RRNKG WT EEH  FL G+     S++ A+A  +PTR+ LQ+RTH+QKYFDK++ G  FP +PYPSQYDR +G++ +A GAY Y A + +
Sbjct:    3 IRRNKGRWTHEEHAEFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPNEPYPSQYDRAAGRAGVAAGAYMYSAPKHE 93
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BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Match: A0A6H5KVV5_9PHAE (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.000e-24
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    4 VRRNKGMWTREEHDAFLGGLRQHG-SNIHALALAVPTRSALQIRTHSQKYFDKIEGGMQFPAKPYPSQYDRTSGKSCIARGAYEYGAVQEQ 273
            +RRNKG WT EEH  FL G+     S++ A+A  +PTR+ LQ+RTH+QKYFDK++ G  FP +PYPSQYDR +G++ +A GAY Y A + +
Sbjct:    3 IRRNKGRWTHEEHAVFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPTEPYPSQYDRAAGRAGVAAGAYMYSAPKHE 93
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Match: A0A6H5L149_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L149_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.390e-21
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    4 VRRNKGMWTREEHDAFLGGLRQHG-SNIHALALAVPTRSALQIRTHSQKYFDKIEGGMQFPAKPYPSQYDRTSGKSCIARGAYEY 255
            +RRNKG WT EEHDAFL G+R+   +N   +A  +PTR+ LQIRTH+QKY+ K++ G  FP +PYPSQ++  +GKS  + GAY Y
Sbjct:    3 IRRNKGRWTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQHEAAAGKSSASAGAYLY 87
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BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Match: Q8QN94_ESV1K (EsV-1-195 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN94_ESV1K)

HSP 1 Score: 81.3 bits (199), Expect = 7.930e-17
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 3 
Query:    6 SKEQGNVDARRARCFPRGPTATRVEHSRLGIGGANTFCTSNQDTLSKV 149
            SKEQG+VDARRAR FP+ PTATRVE  RLG GGANTFCT NQDTL KV
Sbjct:   95 SKEQGHVDARRARGFPQRPTATRVEQPRLGTGGANTFCTLNQDTLPKV 142
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BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Match: A0A6H5JC35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.070e-15
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   13 NKGMWTREEHDAFLGGLRQHGSNIHALALAVPTRSALQIRTHSQKYFDKIEGGMQFPAKPYPSQY 207
            N G WT+EEHDAFL GL  HG N   +A  V TRSA+Q+RTH QKYF K++ G +FP +PY S +
Sbjct:    6 NNGRWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESMF 70
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BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Match: D7FXJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 5.490e-13
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    4 VRRNKGMWTREEHDAFLGGLRQHG-SNIHALALAVPTRSALQIRTHSQKYFDKIEGGMQFP 183
            +RRNKG WT EEH AFL G+R+   +N   +A  +PTR+ LQIRTH+QKY+ K++ G  FP
Sbjct:    8 IRRNKGRWTSEEHHAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFP 68
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BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Match: D8LU61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU61_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 6.190e-10
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    1 MVRRNKGMWTREEHDAFLGGLRQHGSNIHALAL----AVPTRSALQIRTHSQKYFDKIEGGMQFPAKPY 195
            M RRNKG WT++EH+ FL  + Q G    +  L     V TRS  Q+RTH+QKYF +I  G  FP +PY
Sbjct:    1 MRRRNKGRWTKDEHERFLSVVGQLGKTTESWKLISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPY 69
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Match: A0A1E7FKC4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKC4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.730e-9
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   25 WTREEHDAFLGGLRQHGSNIHALALAVPTRSALQIRTHSQKYFDKI 162
            WT+EEHDAFL GL+ +G     +A  V TR+ +Q RTH+QKYF K+
Sbjct:    2 WTKEEHDAFLSGLKMYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKL 47
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Match: A0A7S2WSS8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSS8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.490e-9
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 VRRNKGMWTREEHDAFLGGLRQHGSNIHALALAVPTRSALQIRTHSQKYFDKIEGGMQ 177
            V+ N G WT EEH+ FL GL+ HG     +A  + TR+ +QIRTH+QKYF K+    Q
Sbjct:  129 VKENTGRWTMEEHNMFLEGLKLHGKGWKQIAQMIKTRTVVQIRTHAQKYFQKLAKAQQ 186
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14430.3221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPL1_ECTSI3.550e-4277.78HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
D7FXQ4_ECTSI2.850e-2452.75HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KVV5_9PHAE3.000e-2452.75HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5L149_9PHAE4.390e-2154.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QN94_ESV1K7.930e-1781.25EsV-1-195 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JC35_9PHAE1.070e-1556.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXJ4_ECTSI5.490e-1354.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU61_ECTSI6.190e-1047.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1E7FKC4_9STRA2.730e-954.35Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A7S2WSS8_9STRA7.490e-948.28Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14430contigE-fasciculatus_F_contig14430:423..981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog2880.D8LU61
EggNOG free text desc.Myb-like DNA-binding domain
EggNOG OGs2EA1V@1,2SGBG@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor. Inserted viral gene
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-06_005000.1
Exons2
Model size435
Cds size435
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.093581-CDS-E-fasciculatus_F_contig14430:422..6681622927931.093581-CDS-E-fasciculatus_F_contig14430:422..668Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14430 423..668 -
1695995755.851206-CDS-E-fasciculatus_F_contig14430:422..6681695995755.851206-CDS-E-fasciculatus_F_contig14430:422..668Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14430 423..668 -
1622927931.1095638-CDS-E-fasciculatus_F_contig14430:792..9811622927931.1095638-CDS-E-fasciculatus_F_contig14430:792..981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14430 793..981 -
1695995755.8696585-CDS-E-fasciculatus_F_contig14430:792..9811695995755.8696585-CDS-E-fasciculatus_F_contig14430:792..981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14430 793..981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14430.3221.1prot_E-fasciculatus_F_contig14430.3221.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14430 423..981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14430.3221.1

>prot_E-fasciculatus_F_contig14430.3221.1 ID=prot_E-fasciculatus_F_contig14430.3221.1|Name=mRNA_E-fasciculatus_F_contig14430.3221.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=145bp
MVRRNKGMWTREEHDAFLGGLRQHGSNIHALALAVPTRSALQIRTHSQKY
FDKIEGGMQFPAKPYPSQYDRTSGKSCIARGAYEYGAVQEQQQQQQQLQQ
QQLQQQQQQQQQQQEQQQQQQQQQQQQQQEQQQQQYRESHRVER*
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mRNA from alignment at E-fasciculatus_F_contig14430:423..981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14430.3221.1 ID=mRNA_E-fasciculatus_F_contig14430.3221.1|Name=mRNA_E-fasciculatus_F_contig14430.3221.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=559bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14430:423..981- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCGAAGGAACAAGGGAATGTGGACGCGCGAAGAGCACGATGCTTT
CCTCGGGGGCCTACGGCAACACGGGTCGAACATTCACGCCTTGGCATTGG
CGGTGCCAACACGTTCTGCACTTCAAATCAGGACACACTCTCAAAAGTAT
TTTGACAAGATCGAAGGGGGGATGCAGTTTCCCGCAAAGGTGTGTGTGTG
TGTGTACCGATGCCAAGCCCTACTTCTGGTGGCCACATGTGATGTTCCAT
ATCGCCTCACAAAAATCACCCATTTCTTTCCGACACTGCTGTATCATTTG
CTGCTTGACGTAGCCGTACCCGAGTCAGTACGACAGGACGTCGGGAAAGT
CTTGCATCGCCCGCGGGGCTTACGAGTATGGTGCTGTTCAAGAACAGCAG
CAGCAGCAGCAGCAGCTACAACAGCAACAGCTACAACAGCAACAGCAGCA
ACAGCAGCAACAGCAAGAGCAACAGCAGCAACAGCAGCAGCAGCAACAGC
AACAGCAACAGGAACAGCAGCAGCAGCAGTATCGCGAATCACACAGGGTA
GAAAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14430:423..981-

>mRNA_E-fasciculatus_F_contig14430.3221.1 ID=mRNA_E-fasciculatus_F_contig14430.3221.1|Name=mRNA_E-fasciculatus_F_contig14430.3221.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14430:423..981- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCGAAGGAACAAGGGAATGTGGACGCGCGAAGAGCACGATGCTTT
CCTCGGGGGCCTACGGCAACACGGGTCGAACATTCACGCCTTGGCATTGG
CGGTGCCAACACGTTCTGCACTTCAAATCAGGACACACTCTCAAAAGTAT
TTTGACAAGATCGAAGGGGGGATGCAGTTTCCCGCAAAGATGGTTCGAAG
GAACAAGGGAATGTGGACGCGCGAAGAGCACGATGCTTTCCTCGGGGGCC
TACGGCAACACGGGTCGAACATTCACGCCTTGGCATTGGCGGTGCCAACA
CGTTCTGCACTTCAAATCAGGACACACTCTCAAAAGTATTTTGACAAGAT
CGAAGGGGGGATGCAGTTTCCCGCAAAGCCGTACCCGAGTCAGTACGACA
GGACGTCGGGAAAGTCTTGCATCGCCCGCGGGGCTTACGAGTATGGTGCT
GTTCAAGAACAGCAGCAGCAGCAGCAGCAGCTACAACAGCAACAGCTACA
ACAGCAACAGCAGCAACAGCAGCAACAGCAAGAGCAACAGCAGCAACAGC
AGCAGCAGCAACAGCAACAGCAACAGGAACAGCAGCAGCAGCAGTATCGC
GAATCACACAGGGTAGAAAGGTGACCGTACCCGAGTCAGTACGACAGGAC
GTCGGGAAAGTCTTGCATCGCCCGCGGGGCTTACGAGTATGGTGCTGTTC
AAGAACAGCAGCAGCAGCAGCAGCAGCTACAACAGCAACAGCTACAACAG
CAACAGCAGCAACAGCAGCAACAGCAAGAGCAACAGCAGCAACAGCAGCA
GCAGCAACAGCAACAGCAACAGGAACAGCAGCAGCAGCAGTATCGCGAAT
CACACAGGGTAGAAAGGTGA
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