mRNA_E-fasciculatus_F_contig14428.3220.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE) HSP 1 Score: 602 bits (1552), Expect = 1.370e-201 Identity = 319/335 (95.22%), Postives = 323/335 (96.42%), Query Frame = 2
Query: 2 GFEAVQWLLEPEMGGKRISSFTGPLARALETRRLEFFSTNIVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQQGSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFGGTAPSLDDDGSXXXXXLPEEEEDTEGVLWFDRGGMR 1006
GFEAVQWLLEPEMGGKRISSFTGPLARALETRRLEFFSTNIVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQ GSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPT+IPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVI+EEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGF+MAMFALFGG+APSLD XXXXX DTEGVLWFDRGG R
Sbjct: 735 GFEAVQWLLEPEMGGKRISSFTGPLARALETRRLEFFSTNIVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQ-GSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTKIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIEEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFAMAMFALFGGSAPSLDXXXXXXXXXXXXXXXDTEGVLWFDRGGAR 1068
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI) HSP 1 Score: 149 bits (376), Expect = 3.140e-36 Identity = 109/337 (32.34%), Postives = 167/337 (49.55%), Query Frame = 2
Query: 2 GFEAVQWLLEPEMGGKRISSFTGPLARALETRRLEFFSTNIVLAYVSRKFSRGLPGVFSGASWKMPD----------MHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQQGSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCF-VVKLESPTEIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQS-ELWNVVEAVLLGLVCAAFTFRMVAF---------------GSDVIQE-EAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFGGTAPSLDDDG 928
G VQ +LEPE+ G + GPLA+A+++R ++F T +V+ Y+ KFS GLP F W+ M N D + ++ + G PD+ + +PGLQF G+A + AF+ VPA+R+A DV+ Y ++ +F VV L I A +V + VY++G + ++ E + LR WNVVEA L + AF FRM A+ GS + E +LAQ F A +AP +VLFL Q+ +LG ++ F ++ ++ RFG ++ VI LGF++A +A+FG + SL D G
Sbjct: 527 GTTLVQEMLEPELAGLQPRDCAGPLAQAMQSRHVDFIYTPLVVDYLRLKFSAGLPNPFRETDWRREHGRVDRNLARFMVNEDESQLMVYILQGGCPDSP----------------------SWTYLPGLQFILAGVAGKTAAFFGVPAMRLALDVLVYTGVVSVFVLKVVVLRDVGRITAWDVLWLVYLVGAIWKQVHEVQEAGSLRVHLFNPWNVVEATKLASLSTAFFFRMHAWVCDGHGEYFCGQLSTGSGSVNELNEVYLAQYFQAASAPFVLGKVLFLTQVHSSLGPLMHSAFNVIGDLTRFGALMLVITLGFALAFYAMFGSMSASLPDGG 841
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 115 bits (289), Expect = 8.960e-25 Identity = 106/349 (30.37%), Postives = 155/349 (44.41%), Query Frame = 2
Query: 2 GFEAVQWLLEPEMGGKRISSFTGPLARALETRR-LEFFSTNIVLA-YVSRKFSRGLPGVFSGASWKMPDMHN-RDTRRFVLGLPYGAAPDNVVGAVRMRL---------------CVPFELI----QQGSALRRTSLI----------------------------PGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFG 898
G + EPE+ + GPL AL+ R+ ++ F T +L ++SR+F+ GLPG + D N RR + L G + + G + L C+ +L Q+G L +I PG QF GL PD +Y VPA+RM D+ YL ML+ F VV + E AF Y+L ++ E E R L ++ WN+++ + LGLV R D A + A++APL FSR+LF AQ+ G M+Q++F M E+V+FGVVI V++LGF+M+ ALFG
Sbjct: 629 GMTGCSAVFEPELSREDARGLPGPLRLALQERQHVQTFCTQPLLTDFLSRRFTYGLPG--------LRDTQNILGDRRELTNLARGGPGELMSGQKYLALDEEGRRKEDGRSLDRCLLLDLQDKIGQEGKLLDSRKIIDTLLSPCILLQGANCAGLWNTAVSLTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGPLTPGEAAFAFYILAGIITEGQEMRRDFGLYA-ADHWNILDLLGLGLVTGGLIVRCA--DGDNSWGRALY------ALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFG 960
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE) HSP 1 Score: 114 bits (284), Expect = 3.700e-24 Identity = 75/225 (33.33%), Postives = 116/225 (51.56%), Query Frame = 2
Query: 341 SLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGE------ARYVRKLRGQS---------------------------------ELWNVVEAVLLGLVCAAFTFRMVA-FGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALF 895
+++PGLQF+ G+ +P+ F++VP +R + +YL ML+LFC V L+ P IP EV FY++ G + E+ E R R RG + WN ++ + + AF FRM+A F S E F AQ F+A++APL FSR+L L+QID LG M Q+++RM+ ++RF I +++L F++A A+F
Sbjct: 225 TILPGLQFSLAGILGKPETFFKVPVIRFVYESFSYLVMLVLFCSSVLLKEPDFIPRDEVIFYIFAAGLLWREVLEFLDGVPTRRHRISRGLGPEVGGRVKPGISHLGAGSNFNRMVSAFTRYVFYDTWNFMDMSTICCILVAFIFRMIARFDS----EFDLFYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVIWRMMSHMLRFSAFIAMVMLSFALAFHAVF 445
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI) HSP 1 Score: 114 bits (284), Expect = 3.970e-24 Identity = 74/225 (32.89%), Postives = 116/225 (51.56%), Query Frame = 2
Query: 341 SLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGE------ARYVRKLRGQS---------------------------------ELWNVVEAVLLGLVCAAFTFRMVA-FGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALF 895
+++PGLQF+ G+ +P+ F++VP +R ++ +YL ML+LFC V L+ P IP EV FY++ G + E+ E R R G + WN ++ + + AF FRM+A F S E F AQ F+A++APL FSR+L L+QID LG M Q+++RM+ ++RF I +++L F++A A+F
Sbjct: 857 TILPGLQFSLAGILGKPETFFKVPVIRFVYEIFSYLVMLVLFCSSVLLKEPDFIPRDEVIFYIFAAGLLWREVLEFLDGVPTRRHRTSGGPRTEEGGRVEPGISHLGAGSNFNRMVSAFTRYVFYDTWNFMDTSTICCIFVAFIFRMIARFDS----EFDLFYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVIWRMMSHMLRFSAFIAMVMLSFALAFHAVF 1077
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 111 bits (278), Expect = 2.590e-23 Identity = 92/306 (30.07%), Postives = 157/306 (51.31%), Query Frame = 2
Query: 23 LLEPEMGGKRISSFTGPLARALETR-RLEFFST-NIVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQQ----GSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFC-FVVKLESPTEIPAKEVAFYVYMLGNMVNELGEA-----RYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFGGT 904
+ EPE R + GPL L R ++E + T +VL +++RKF++GLP + RDT +L G + F + Q G AL + PG +F G SRP ++Y+VPA+RM D+VTY+SM+I+F FV+ E+ E+ F +Y+ G ++ E E Y+R + WN+++ L L+ RM +G + +E+ ++ +A++APL F+R+LF AQI + G M+Q++F M + +FG+++ +++LGF + ++L+ T
Sbjct: 1001 IFEPETVISRFHGYQGPLHVVLSKREQMETYCTIPLVLDFMTRKFTKGLPSL-------------RDTEGVLLSNKGFTQTLYGGGLLAEGKVFFFGMALQRGYAGGALSSITYFPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWLEIVFTMYIFGGILTEFREILEDPWEYMR------DQWNLLDVTSLTLLLGGAIQRM--YGQ--VDDES---SRALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKET 1280
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5KIV5_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIV5_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.430e-19 Identity = 97/315 (30.79%), Postives = 147/315 (46.67%), Query Frame = 2
Query: 23 LLEPEMGGKRISSFTGPLARALETR-RLEFFSTN-IVLAYVSRKFSRGLPGVFSGASWKMPDMHNRDTRRFVLGLPYGAAPDNVVGAVRMRLCVPFELIQ----QGSALRRTSLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQ------------------ILFRMLKEVVRFGVVIGVILLGFSMAMFALF 895
L + GG R+ S GPL AL+ R +LE F T +VL Y++R F+RGLPG+ + + ++ +F L + A+ G V EL++ S L +L G QF + +RP Y VPAVRMA D++ YL ML LF V + EV F+VY+LG ++ E+ E R+ + WN ++ L AF R+ + + + A + A APL R LF AQ G M++ I+F + E++RF ++ V ++GF+M+ FALF
Sbjct: 282 LFQDGTGGTRVDS--GPLEMALQARHQLELFCTQPLVLDYLNRAFTRGLPGLDASETGA------QEADQFKLLMQRNASVQVNAGDGESSGEVSRELLEVLEGSHSVLGSLTLSAGKQFILAQVVARPAFSYSVPAVRMAVDLLVYLLMLALFAKDVLWYKEGTVEVGEVVFFVYVLGAILVEITELWDGRE-EYMKDHWNALDVAALAFCGGAFLVRV--YDPESLWGRALYCA------GAPLLLFRTLFFAQFMPAQGPMIEVKEARGYPSFLRDLGLSLIIFSLAGELLRFCTILLVTMMGFAMSFFALF 579
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5KCQ6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ6_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 2.710e-17 Identity = 76/217 (35.02%), Postives = 115/217 (53.00%), Query Frame = 2
Query: 356 LQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCF-VVKLESPTEIPAKEVAFYVYMLGNM-------VNELGEARYVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAF---------------GSDVIQE-EAFFLAQLFFAMAAPLFFSRVLFLAQ--IDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFGGTAPSLDDDG 928
L+F G+A + AF+ VPA+R+A DV+ Y ++ +F VV L I A +V + VY++G + V+E+ EA +R WNVVEA L + AF FRM A+ GS + E +LAQ F A +AP +VLFL Q + +LG ++ F ++ ++ RFG ++ VI LGF++A +A+FG + SL D G
Sbjct: 305 LKFILAGVAGKTAAFFGVPAMRLALDVLVYTGVVSVFVLKVVVLRDVGRITAWDVLWLVYLVGAIWKQVWMVVHEVQEAGSLRVHLFNP--WNVVEATKLASLSTAFFFRMHAWVCDGHGEYFCGQLSTGSGSVNELNEVYLAQYFQAASAPFVLGKVLFLTQARVHSSLGPLMHSAFNVIGDLTRFGALMLVITLGFALAFYAMFGSMSASLPDGG 519
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 2.330e-16 Identity = 62/187 (33.16%), Postives = 106/187 (56.68%), Query Frame = 2
Query: 341 SLIPGLQFNCVGLASRPDAFYEVPAVRMACDVVTYLSMLILFCFVVKLESPTEIPAKEVAFYVYMLGNMVNELGEAR--YVRKLRGQSELWNVVEAVLLGLVCAAFTFRMVAFGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALF 895
+ +PG QF VG+ ++P A+Y+VP +RM +L L L+ V E+ E+A +++ +V+ L + R +V R + WN +E++ L L+ T R+ SDV Q A F A++APL FSRVLF Q + GL++Q++ + E+++F +V+G I++GF+++ +ALF
Sbjct: 469 TFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTAVALESDDGELSNTEIALTFHVMAEIVSNLLQMRAGFVEFWRDK---WNWLESLSLLLLAGGLTIRIR--NSDVHQGRALF------ALSAPLVFSRVLFFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALF 644
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 2.180e-14 Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 2
Query: 599 ELWNVVEAVLLGLVCAAFTFRMVA---FGSDVIQEEAFFLAQLFFAMAAPLFFSRVLFLAQIDENLGLMVQILFRMLKEVVRFGVVIGVILLGFSMAMFALFGGTAPSLDDDGS 931
+ WN+++ + L V AF FR++ FG + FF+AQ F A +APL F+R+L L+QID LG M+QI++RML + +RFGV I V++ GF++A A+FG D D S
Sbjct: 1106 DTWNLLDTLTLSTVFLAFIFRLLGIREFGGPADPGDYFFVAQFFLAASAPLLFARLLRLSQIDSTLGPMIQIIWRMLSQTLRFGVFIVVVMAGFALAFNAVFGSCDAGSDLDES 1219 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14428.3220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14428.3220.1 >prot_E-fasciculatus_F_contig14428.3220.1 ID=prot_E-fasciculatus_F_contig14428.3220.1|Name=mRNA_E-fasciculatus_F_contig14428.3220.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=330bp RVRGGAVAARARDGGQAHQFIHGAPGPGAGDPPPGVLLHQHRPRLRVAEVback to top mRNA from alignment at E-fasciculatus_F_contig14428:3..3223+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14428.3220.1 ID=mRNA_E-fasciculatus_F_contig14428.3220.1|Name=mRNA_E-fasciculatus_F_contig14428.3220.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3221bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14428:3..3223+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14428:3..3223+ >mRNA_E-fasciculatus_F_contig14428.3220.1 ID=mRNA_E-fasciculatus_F_contig14428.3220.1|Name=mRNA_E-fasciculatus_F_contig14428.3220.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1980bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14428:3..3223+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |