mRNA_E-fasciculatus_F_contig14427.3219.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14427.3219.1
Unique NamemRNA_E-fasciculatus_F_contig14427.3219.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Match: A0A6H5L888_9PHAE (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L888_9PHAE)

HSP 1 Score: 814 bits (2102), Expect = 1.510e-295
Identity = 406/477 (85.12%), Postives = 418/477 (87.63%), Query Frame = 1 
Query:    1 PPTRRGIIVDVMVESADKFVDFMGKAAKAKACALQTTVVRSLSATRQTSHEAPPQTRCCLVQEYFRFPDKDGKIMHLAVDVDGVALYVEELGNNMDTGAISTPHARLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKIVPFVMVRDCTAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCGEDASKTEASMTISYEVGKDEAAPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKDMEIGAKFDWRYTWAVEDMPTVYCYGAMSTSEATSPAISEETNKKLPAAFAGAAAAKLAMAGPPASAYYTWDSSPGGTTKFTCGPSVAGGDASAALAKDVDGDDDGLGVRTAGGCKCVTTLHTGPYNELMKCYKATFEWVETKGYESRMPVFELYENDPKDTPPEKLKTKVCI 1431
            PPTRRGIIVDVMVESADKFVDFMGKAAKAK                                EYFRFPD+DGKIMHLA+D+ GVALYVEELGN MDTGAISTPH RLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI+PFV VRDC+AYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHC +DASKTEASMTI+YEVGKDEA PLAKSFKDNGGEVLEEVSMQFWGQVWGRC DPFGQP  LCEVQ GP  SNEDMAKDMEIGAK++WRY W VEDMP VYCYGAMSTS A  PAISEE NK LPAAFAGAAAA LAMAGPPASAYYTWDSSPGGTTKFTCGPSVAGG ASA L KDV+GDD GLGVRTAGGCKCVTTLHTGPY+EL KCY+ATFEWVE KGYESRMPVFELYENDPKDTPPEKLKTKVCI
Sbjct:   20 PPTRRGIIVDVMVESADKFVDFMGKAAKAK--------------------------------EYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKIIPFVSVRDCSAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCSKDASKTEASMTIAYEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCHDPFGQPXXLCEVQEGPPPSNEDMAKDMEIGAKYNWRYNWVVEDMPIVYCYGAMSTSAANGPAISEEINKTLPAAFAGAAAAGLAMAGPPASAYYTWDSSPGGTTKFTCGPSVAGGGASA-LMKDVNGDDIGLGVRTAGGCKCVTTLHTGPYDELKKCYEATFEWVEAKGYESRMPVFELYENDPKDTPPEKLKTKVCI 463
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Match: A0A6H5JNL3_9PHAE (AraC_E_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNL3_9PHAE)

HSP 1 Score: 784 bits (2025), Expect = 8.420e-285
Identity = 378/403 (93.80%), Postives = 391/403 (97.02%), Query Frame = 1 
Query:  223 MHLAVDVDGVALYVEELGNNMDTGAISTPHARLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKIVPFVMVRDCTAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCGEDASKTEASMTISYEVGKDEAAPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKDMEIGAKFDWRYTWAVEDMPTVYCYGAMSTSEATSPAISEETNKKLPAAFAGAAAAKLAMAGPPASAYYTWDSSPGGTTKFTCGPSVAGGDASAALAKDVDGDDDGLGVRTAGGCKCVTTLHTGPYNELMKCYKATFEWVETKGYESRMPVFELYENDPKDTPPEKLKTKVCI 1431
            MHLA+D+ GVALYVEELGN MDTGAISTPH RLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPK+LARKI+PFV VRDC+AYMTF+TDALGAEVVYPPAKDPTGKIMCAE+KINGGIIM+GDHCGEDASKTEASMTIS+EVGKDEA PLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKDMEIGAK+DWRYTWAVEDMPTVYCYGAMSTSEAT PAISEETNK LPAAFAGAAAA LAMAGPPASAYYTWD SPGGTTKFTCGPSVAGG ASA L KDVDGDD+GLGVRTAGGCKCVTTLHTGPY++LMKCYKATFEWVETKGYESRMPVFELYENDPKDTPPEKLKTKVCI
Sbjct:    1 MHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKKLARKIIPFVSVRDCSAYMTFVTDALGAEVVYPPAKDPTGKIMCAELKINGGIIMVGDHCGEDASKTEASMTISHEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKDMEIGAKYDWRYTWAVEDMPTVYCYGAMSTSEATGPAISEETNKTLPAAFAGAAAAGLAMAGPPASAYYTWDPSPGGTTKFTCGPSVAGGGASA-LMKDVDGDDNGLGVRTAGGCKCVTTLHTGPYDQLMKCYKATFEWVETKGYESRMPVFELYENDPKDTPPEKLKTKVCI 402
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Match: D8LJ97_ECTSI (AraC family transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ97_ECTSI)

HSP 1 Score: 486 bits (1251), Expect = 2.930e-169
Identity = 236/265 (89.06%), Postives = 245/265 (92.45%), Query Frame = 1 
Query:  637 MKINGGIIMLGDHCGEDASKTEASMTISYEVGKDEAAPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKDMEIGAKFDWRYTWAVEDMPTVYCYGAMSTSEATSPAISEETNKKLPAAFAGAAAAKLAMAGPPASAYYTWDSSPGGTTKFTCGPSVAGGDASAALAKDVDGDDDGLGVRTAGGCKCVTTLHTGPYNELMKCYKATFEWVETKGYESRMPVFELYENDPKDTPPEKLKTKVCI 1431
            MKINGGI+MLGDHC +DASKTEASMT+SYEV KDEA PLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQ GP  SNEDMAKDMEIGAK+DW YTW VEDMPTVYCYGAMSTS A +PAISEET K LPAAFAGAAAA LAMAGPPASA+YTWD SPGGTTKFT GPSVAGG ASA L KDVDGDD+GLGVRTAGGCKCVTTLHTGPY+EL KCY+ATFEWVE KGYESRMPVFELYENDPKDTPPEKLKTKVCI
Sbjct:    1 MKINGGIVMLGDHCSKDASKTEASMTVSYEVRKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPSNEDMAKDMEIGAKYDWHYTWVVEDMPTVYCYGAMSTSAANTPAISEETKKTLPAAFAGAAAAGLAMAGPPASAFYTWDPSPGGTTKFTSGPSVAGGGASA-LMKDVDGDDNGLGVRTAGGCKCVTTLHTGPYDELKKCYEATFEWVEAKGYESRMPVFELYENDPKDTPPEKLKTKVCI 264
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Match: D8LJ96_ECTSI (Glyoxalase family protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ96_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 1.590e-87
Identity = 142/175 (81.14%), Postives = 149/175 (85.14%), Query Frame = 1 
Query:    1 PPTRRGIIVDVMVESADKFVDFMGKAAKAKACALQTTVVRSLSATRQTSHEAPPQT---RCCLVQEYFRFPDKDGKIMHLAVDVDGVALYVEELGNNMDTGAISTPHARLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI 516
            PPTRRGIIV+VMVESADKFVDFMGK  KAK   L      +LS   +TS+ A P T   R   VQEYFRFPD+DGKIMHLA+D+ GVALYVEELGN MDTGAISTPHARLHLNTDDP GVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI
Sbjct:   20 PPTRRGIIVNVMVESADKFVDFMGKTTKAKIWRLTDGGGDALSRPSRTSYLAAPYTHNHRGFPVQEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHARLHLNTDDPIGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI 194
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Match: UPI001556A403 (VOC family protein n=1 Tax=Pseudoruegeria sp. HB172150 TaxID=2721164 RepID=UPI001556A403)

HSP 1 Score: 83.2 bits (204), Expect = 2.340e-15
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 1 
Query:  499 ELARKIVPFVMVRDCTAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDH---CGEDASKTEASMTISYEVGKDEAAPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCE 870
            EL R ++P++ ++D    ++F   A GAE++  P  D  GKIM A + IN G IML D+    G  ++K + SMT+   V  D+         + G EV +E  ++FWG  +GR +DPFG  W + E
Sbjct:    8 ELMRGVLPYLAIKDAADAISFYKVAFGAEMIGEPYADEQGKIMNASLAINDGTIMLMDNNEAYGIASAKGDRSMTLQLVV--DDGTAWWNRALEAGCEVSQEYKLEFWGDYYGRIRDPFGLEWAILE 132
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Match: A0A0F2P6N2_9HYPH (VOC domain-containing protein n=1 Tax=Hoeflea sp. BRH_c9 TaxID=1629712 RepID=A0A0F2P6N2_9HYPH)

HSP 1 Score: 71.6 bits (174), Expect = 2.530e-11
Identity = 39/125 (31.20%), Postives = 58/125 (46.40%), Query Frame = 1 
Query:  496 KELARKIVPFVMVRDCTAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCGEDASKTEASMTISYEVGKDEAAPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCE 870
            K L R ++P+  V      + F T A GA     P +   G+++ A ++INGG++ML D   E  S+  A      ++   +           G EVL    ++FWG  WGR +DPFG  W   E
Sbjct:    8 KRLMRGVIPYATVDGVDKAIEFYTRAFGAVAHGEPVRSEDGRVLNASIEINGGMVMLMDPFPEHGSQPSAGSNFLLQLVIADGDLWWDRAVKAGCEVLSPFKLEFWGDRWGRVRDPFGLEWAFNE 132
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Match: A0A2V9UEF3_9BACT (Glyoxalase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9UEF3_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 2.770e-11
Identity = 51/150 (34.00%), Postives = 77/150 (51.33%), Query Frame = 1 
Query:  481 IEDVPKELARKIVPFVMVRDCTAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCGEDASKTE-----ASMTISYEVGKDEAAPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKD 915
            ++ VP E    + PF+ V+DCT  + F   A GA+     AKDP+GK+M AE+KI   I+M+ D   +  + +      +SM +   V   +AA   ++ K  G +V   V  QFWG  +G+ KDPFG  W +        T  +DM+ D
Sbjct:    3 VKPVP-ECYHTLTPFMTVKDCTRAIEFYQQAFGAQA-RGVAKDPSGKVMHAEIKIGDSIVMMADEFPDFGALSPESVGGSSMGLHIYVPDVDAA-FDRAVKA-GAKVEMPVMDQFWGDRYGKLKDPFGHKWSIA-------THVKDMSMD 141
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Match: A0A2V7X1W6_9BACT (Glyoxalase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7X1W6_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 3.780e-11
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 1 
Query:  514 IVPFVMVRDCTAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCGEDASKTE-----ASMTISYEVGKDEAAPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKD 915
            + PF+ V+DC   + F   A GAE     AKDP+GK+M AE+KI   +IM+ D   +  + +      +SM +   V   + A  A++ K  G +V   V  QFWG  +GR KDPFG  W +        T  +DM+ D
Sbjct:   13 VTPFMTVKDCARAIEFYKQAFGAEE-RGIAKDPSGKVMHAEIKIGDSVIMMADEFPDFGALSPESVGGSSMGLHIYVTDVDGA-FARAVKA-GAKVEMPVMDQFWGDRYGRLKDPFGHKWSIA-------THVKDMSSD 141
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Match: A0A2W1K493_9CYAN (VOC domain-containing protein n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1K493_9CYAN)

HSP 1 Score: 70.9 bits (172), Expect = 6.250e-11
Identity = 39/145 (26.90%), Postives = 69/145 (47.59%), Query Frame = 1 
Query:  517 VPFVMVRDCTAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGD----HCGEDASKTEASMTISYEVGKDEAAPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLC---------EVQTGPTTSNEDMAK 912
            +P++ + D T  + F T+  G    Y     P G++M  E ++      L +    H G  +  + A+ +++  +  D+   + ++ KDNG  VL E +  FWG+ +GR +DPFG  WG+          E+QT       DM++
Sbjct:   10 IPYLSITDATTAVAFYTNVFGV-APYVLLSMPDGRVMHCEYRVGNARFFLSEELPEHGGTPSPASLAATSVAIHLYVDDCDAMIETMKDNGSTVLMEPADMFWGERFGRVRDPFGHEWGIATQLREMSPDEIQTAAGKMFADMSE 153
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Match: A0A517MUY5_9BACT (VOC domain-containing protein n=1 Tax=Adhaeretor mobilis TaxID=1930276 RepID=A0A517MUY5_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 1.580e-10
Identity = 36/129 (27.91%), Postives = 61/129 (47.29%), Query Frame = 1 
Query:  490 VPKELARKIVPFVMVRDCTAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIM----LGDHCGEDASKTEASMTISYEVGKDEAAPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGL 864
            +P     + +P++ + D T  + F TD  G    Y     P G++M  E ++          L +H G  +    A  T++  +  D+   + ++ K NG  VL E +  FWG+ +GR +DPFG  WG+
Sbjct:    1 MPSPTPSEFIPYLSITDATKAVAFYTDVFGV-APYLLLNMPDGRVMHCEFRVGNARFFVSEELPEHGGTPSPTRLAGTTVAIHLYVDDCDRMIEAMKTNGSTVLMEPADMFWGERFGRVRDPFGHEWGI 128
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14427.3219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L888_9PHAE1.510e-29585.12VOC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JNL3_9PHAE8.420e-28593.80AraC_E_bind domain-containing protein n=2 Tax=Ecto... [more]
D8LJ97_ECTSI2.930e-16989.06AraC family transcriptional regulator n=1 Tax=Ecto... [more]
D8LJ96_ECTSI1.590e-8781.14Glyoxalase family protein (Partial) (Fragment) n=1... [more]
UPI001556A4032.340e-1536.22VOC family protein n=1 Tax=Pseudoruegeria sp. HB17... [more]
A0A0F2P6N2_9HYPH2.530e-1131.20VOC domain-containing protein n=1 Tax=Hoeflea sp. ... [more]
A0A2V9UEF3_9BACT2.770e-1134.00Glyoxalase n=1 Tax=Acidobacteria bacterium TaxID=1... [more]
A0A2V7X1W6_9BACT3.780e-1135.25Glyoxalase n=1 Tax=Acidobacteria bacterium TaxID=1... [more]
A0A2W1K493_9CYAN6.250e-1126.90VOC domain-containing protein n=1 Tax=Acaryochlori... [more]
A0A517MUY5_9BACT1.580e-1027.91VOC domain-containing protein n=1 Tax=Adhaeretor m... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14427contigE-fasciculatus_F_contig14427:3..3333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.5
Seed ortholog evalue7.6e-11
Seed eggNOG ortholog1040987.AZUY01000010_gene4307
KEGG koko:K04750
EggNOG free text desc.Glyoxalase bleomycin resistance protein dioxygenase
EggNOG OGs1RJPS@1224,2UACG@28211,43K54@69277,COG2764@1,COG2764@2
COG Functional cat.S
Best tax levelPhyllobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Ec32 orthologEc-02_005420.1
Exons7
Model size1431
Cds size1431
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927930.7757359-CDS-E-fasciculatus_F_contig14427:2..4401622927930.7757359-CDS-E-fasciculatus_F_contig14427:2..440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 3..440 -
1695995755.7037077-CDS-E-fasciculatus_F_contig14427:2..4401695995755.7037077-CDS-E-fasciculatus_F_contig14427:2..440Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 3..440 -
1622927930.7894764-CDS-E-fasciculatus_F_contig14427:597..7701622927930.7894764-CDS-E-fasciculatus_F_contig14427:597..770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 598..770 -
1695995755.7227972-CDS-E-fasciculatus_F_contig14427:597..7701695995755.7227972-CDS-E-fasciculatus_F_contig14427:597..770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 598..770 -
1622927930.8063257-CDS-E-fasciculatus_F_contig14427:1205..14041622927930.8063257-CDS-E-fasciculatus_F_contig14427:1205..1404Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 1206..1404 -
1695995755.7343915-CDS-E-fasciculatus_F_contig14427:1205..14041695995755.7343915-CDS-E-fasciculatus_F_contig14427:1205..1404Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 1206..1404 -
1622927930.8239224-CDS-E-fasciculatus_F_contig14427:1895..20971622927930.8239224-CDS-E-fasciculatus_F_contig14427:1895..2097Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 1896..2097 -
1695995755.7450166-CDS-E-fasciculatus_F_contig14427:1895..20971695995755.7450166-CDS-E-fasciculatus_F_contig14427:1895..2097Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 1896..2097 -
1622927930.8430893-CDS-E-fasciculatus_F_contig14427:2483..27161622927930.8430893-CDS-E-fasciculatus_F_contig14427:2483..2716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 2484..2716 -
1695995755.7547243-CDS-E-fasciculatus_F_contig14427:2483..27161695995755.7547243-CDS-E-fasciculatus_F_contig14427:2483..2716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 2484..2716 -
1622927930.8602495-CDS-E-fasciculatus_F_contig14427:2898..29941622927930.8602495-CDS-E-fasciculatus_F_contig14427:2898..2994Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 2899..2994 -
1695995755.765194-CDS-E-fasciculatus_F_contig14427:2898..29941695995755.765194-CDS-E-fasciculatus_F_contig14427:2898..2994Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 2899..2994 -
1622927930.87737-CDS-E-fasciculatus_F_contig14427:3243..33331622927930.87737-CDS-E-fasciculatus_F_contig14427:3243..3333Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 3244..3333 -
1695995755.7733493-CDS-E-fasciculatus_F_contig14427:3243..33331695995755.7733493-CDS-E-fasciculatus_F_contig14427:3243..3333Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14427 3244..3333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14427.3219.1prot_E-fasciculatus_F_contig14427.3219.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14427 3..3333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14427.3219.1

>prot_E-fasciculatus_F_contig14427.3219.1 ID=prot_E-fasciculatus_F_contig14427.3219.1|Name=mRNA_E-fasciculatus_F_contig14427.3219.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=477bp
PPTRRGIIVDVMVESADKFVDFMGKAAKAKACALQTTVVRSLSATRQTSH
EAPPQTRCCLVQEYFRFPDKDGKIMHLAVDVDGVALYVEELGNNMDTGAI
STPHARLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQ
IWSVSNSTNTIEDVPKELARKIVPFVMVRDCTAYMTFLTDALGAEVVYPP
AKDPTGKIMCAEMKINGGIIMLGDHCGEDASKTEASMTISYEVGKDEAAP
LAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNE
DMAKDMEIGAKFDWRYTWAVEDMPTVYCYGAMSTSEATSPAISEETNKKL
PAAFAGAAAAKLAMAGPPASAYYTWDSSPGGTTKFTCGPSVAGGDASAAL
AKDVDGDDDGLGVRTAGGCKCVTTLHTGPYNELMKCYKATFEWVETKGYE
SRMPVFELYENDPKDTPPEKLKTKVCI
back to top

mRNA from alignment at E-fasciculatus_F_contig14427:3..3333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14427.3219.1 ID=mRNA_E-fasciculatus_F_contig14427.3219.1|Name=mRNA_E-fasciculatus_F_contig14427.3219.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3331bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14427:3..3333- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCCGACTCGCAGGGGCATCATCGTGGATGTCATGGTCGAGAGCGCGGA
CAAGTTTGTCGACTTCATGGGAAAAGCCGCCAAAGCCAAGGTGTGAAAAG
CTCGTCCGCACATGAACAATTTTAGCGTTTTCGCGGGCTTTTGGGCTCAA
AACTGCTGTCGGGTCTTTTTAGTGTTTGTGCCCCGTTTTGGCTGGCTTTT
GCCCACAACAGTGTTCTCCCGCATCCCAGCAACATCAACTGCACATGCAG
ACTTGCTGCACACGGACAGGCAGTTGCCATCTCAGTCGTCGACGAGATTC
ACATGCGAGTCGGCTTGCTTTATAGGCTTGCTTGTGTAGGCTTGCGCCTT
GCAGACCACGGTGGTGAGATCCCTTTCAGCGACACGGCAGACCTCGCATG
AAGCTCCACCGCAGACACGCTGTTGCTTGGTGCAGGTGCAAGCATCGCGC
ATTTCGTGTTGCTTCGAAAGGTTCCGACGGATTTTGCGTTCTTTGTAGGA
AGAAGAATTTACCAGTCCGGTGTTCTGCGCAGCAAAGTCCATTTCGTTCG
TCACGTTCTTCCAAATCGGAAAGCAACATAACTTGATGCATCCCCCCACC
CGCCCACCGTTCCCCAGGAGTACTTTCGCTTCCCCGACAAGGACGGCAAG
ATCATGCACCTCGCCGTCGACGTCGATGGCGTAGCGCTGTACGTCGAGGA
ACTCGGCAACAACATGGACACCGGCGCCATCAGTACCCCTCACGCCCGCC
TCCACCTCAACACCGACGACCCGGCCGGCGTTGGAGCCAAGCTCGTCGAG
CACGGTGCCAAGGAGCTCACCAAGATGGCCGAGCAGTTCTGGGGCGCCAC
GTGAGTTGATGATGCTCTATGTTTTTGGGTCAAAAAGAATTTCGAGAGAT
GAAAGGGCTTTGTGCCACGGTTGTGCTCTTGAGGGAACTGCAGTCATATA
ACCGGGTGGGTGTCGTTGGATGCTTCGCTCCTTGTCAGGTCAGTACGGTT
GTCGCCCATGATGGTCTTGTTGAAATGTCCCCGCGCACGCGCATCCTTTG
GCGTCCCTTCTACCCCGATATGACAACACATGAGTTCTCTCTGACAATGT
TAGCACGACACGCGCGCCTGATGTGTCTCTTGTTTGGTTGCAAGACCCAC
GACGAAACGTAGCGCACTCAGCACAGGCACAAGCCTGGACACTCTTAAAC
CTAACGCCCTTGCCCTCTATTCGAATACAACAAAAGGTTCGGTGTTTACC
AGGACCCGTTCGGTCAGATCTGGTCGGTGTCCAACTCCACCAACACCATC
GAAGACGTGCCCAAGGAACTGGCCCGCAAGATCGTCCCCTTCGTCATGGT
CCGTGACTGCACCGCCTACATGACCTTCCTCACGGACGCCCTGGGAGCGG
AGGTCGTGTACCCCCCTGCGAAGGACCCCACCGGCAAGGTTCGTGGACTT
TAAGGTAGTAGTGTTAGTCCTTAGACTTGCAAGGTAGGAGTGGGAGTCTC
TAGCACGTCTTCTCAAGAATATTAAGTGTTGTGTGTGAAATAGAGAGGGG
GGGGGTCGAAACCGTATCCCTATCCCCTTAACCCCTACGTAAACCAAGTT
GATTCTTGATATTGATGTCCTCGCGAGAGCTACTGCGTCTGTCTCTAGGT
GTGTAGCATCGTCACAAGTGACCAACGCAGGAACACCGGTCACCCTTTTA
TCAGCCCCGTGTGAGAGGTGGTTCCATATGCTATTCTCAAACATGTCTGG
TGGGCTCCTCGTTGCTTGGCTTGTATATTCTCACGTGCAATCGAGACCAG
TCGCTCGCCCGGGTCGTGATTATCTGTTTGCTGATTTAATTCAGTCTCGT
CGAATATCGGCCGCTGACCGCCAGCCTGAAAGCACGCGTTCATTTTTTCC
TGTTGAATGTATTCTCTTGACGAACCCAGATCATGTGCGCGGAGATGAAG
ATCAACGGCGGCATCATCATGCTCGGCGACCACTGCGGCGAGGACGCGAG
CAAGACGGAGGCCTCGATGACCATCTCGTACGAGGTCGGGAAGGACGAGG
CGGCTCCCCTGGCCAAGTCCTTCAAGGACAACGGCGGGGAGGTCCTCGAG
GAGGTGTCGATGCAGTTCTGGGGACAAGGTGGGCGGGATCGAGATTAGTG
ATCAGGAGGAGGGGTGCTCACTGTCAATCGATCGGTTGTTGCCATCATTT
GGTCTGCACCACAGTGCGTCTGCACAGCACATGGATGCTTGTGCTCTCTT
GCTCTGCCGCCTTCAAATAGGGTTAACCAATGCGAACCGGCACGGTGACA
CATTTTCTGGGCGGTGTGTATGCTGCATGTTTCCAGAACAACCACTTTGT
GATTGTCTCGGTTTCAACCGCTTGTGACTGCTTGTTACGATGCACGCATG
CGCGGCCGTGAAGATCACGATACGATCGTCCGCCAGTAGGGAGATCCACG
GAGGTACTTCACACCAAGCAAATAGTCCACTATTCCTACGCTCATGTCCT
CATGACGATATCGCGCCCTTGTCGTACCGCGTTTTGGTCTCATATTTCGA
TATCGACGTTCAGTGTGGGGTCGATGCAAAGACCCCTTTGGCCAACCGTG
GGGCTTGTGCGAGGTACAGACCGGCCCTACTACCTCCAACGAAGACATGG
CCAAGGACATGGAAATCGGCGCCAAGTTCGACTGGCGCTACACCTGGGCG
GTTGAGGACATGCCTACTGTGTACTGTTACGGAGCGGTGAGAAATAGCCT
AACGTCCATGTTCCTGCTGTCGTTATCGTTGTTGTTGTCGTTGTCGTTGT
CGTTGCTGTTATCCTCATACCGCCCTTGCTTGTGGTTCTGTCTTCACTCG
CAGATTCTTCTTGCCATCCCCTCCCTACCCTGACCCCCCGCAGATGTCCA
CAAGCGAAGCGACCAGCCCCGCCATCAGCGAAGAGACCAACAAGAAGCTC
CCCGCCGCCTTCGCAGGAGCCGCCGCGGCCAAGCTCGCCATGGCCGGGCC
CCCCGCGTCCGCCTACTACACCTGGGACTCTTCCCCCGGCGGGACCACCA
AGTTCACATGCGGACCCTCGGTGGCCGGTGGCGACGCCTCCGCCGCTCTG
GCGAAGGACGTCGACGGGGACGACGACGGCCTCGGCGTGAGGACCGCCGG
CGGCTGCAAGTGTGTGACGACGCTGCACACGGGGCCGTACAACGAGCTGA
TGAAGTGCTACAAGGCGACGTTCGAGTGGGTCGAGACCAAGGGGTACGAG
TCGCGCATGCCCGTGTTCGAGCTGTACGAGAACGACCCCAAGGACACCCC
GCCCGAGAAGCTCAAGACCAAGGTCTGCATC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14427:3..3333-

>mRNA_E-fasciculatus_F_contig14427.3219.1 ID=mRNA_E-fasciculatus_F_contig14427.3219.1|Name=mRNA_E-fasciculatus_F_contig14427.3219.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2862bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14427:3..3333- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCCGACTCGCAGGGGCATCATCGTGGATGTCATGGTCGAGAGCGCGGA
CAAGTTTGTCGACTTCATGGGAAAAGCCGCCAAAGCCAAGCCGCCGACTC
GCAGGGGCATCATCGTGGATGTCATGGTCGAGAGCGCGGACAAGTTTGTC
GACTTCATGGGAAAAGCCGCCAAAGCCAAGGCTTGCGCCTTGCAGACCAC
GGTGGTGAGATCCCTTTCAGCGACACGGCAGACCTCGCATGAAGCTCCAC
CGCAGACACGCTGTTGCTTGGTGCAGGCTTGCGCCTTGCAGACCACGGTG
GTGAGATCCCTTTCAGCGACACGGCAGACCTCGCATGAAGCTCCACCGCA
GACACGCTGTTGCTTGGTGCAGGAGTACTTTCGCTTCCCCGACAAGGACG
GCAAGATCATGCACCTCGCCGTCGACGTCGATGGCGTAGCGCTGTACGTC
GAGGAACTCGGCAACAACATGGACACCGGCGCCATCAGTACCCCTCACGC
CCGCCTCCACCTCAACACCGACGACCCGGCCGGCGTTGGAGCCAAGCTCG
TCGAGCACGGTGCCAAGGAGCTCACCAAGATGGCCGAGCAGTTCTGGGGC
GCCACGAGTACTTTCGCTTCCCCGACAAGGACGGCAAGATCATGCACCTC
GCCGTCGACGTCGATGGCGTAGCGCTGTACGTCGAGGAACTCGGCAACAA
CATGGACACCGGCGCCATCAGTACCCCTCACGCCCGCCTCCACCTCAACA
CCGACGACCCGGCCGGCGTTGGAGCCAAGCTCGTCGAGCACGGTGCCAAG
GAGCTCACCAAGATGGCCGAGCAGTTCTGGGGCGCCACGTTCGGTGTTTA
CCAGGACCCGTTCGGTCAGATCTGGTCGGTGTCCAACTCCACCAACACCA
TCGAAGACGTGCCCAAGGAACTGGCCCGCAAGATCGTCCCCTTCGTCATG
GTCCGTGACTGCACCGCCTACATGACCTTCCTCACGGACGCCCTGGGAGC
GGAGGTCGTGTACCCCCCTGCGAAGGACCCCACCGGCAAGGTTCGGTGTT
TACCAGGACCCGTTCGGTCAGATCTGGTCGGTGTCCAACTCCACCAACAC
CATCGAAGACGTGCCCAAGGAACTGGCCCGCAAGATCGTCCCCTTCGTCA
TGGTCCGTGACTGCACCGCCTACATGACCTTCCTCACGGACGCCCTGGGA
GCGGAGGTCGTGTACCCCCCTGCGAAGGACCCCACCGGCAAGATCATGTG
CGCGGAGATGAAGATCAACGGCGGCATCATCATGCTCGGCGACCACTGCG
GCGAGGACGCGAGCAAGACGGAGGCCTCGATGACCATCTCGTACGAGGTC
GGGAAGGACGAGGCGGCTCCCCTGGCCAAGTCCTTCAAGGACAACGGCGG
GGAGGTCCTCGAGGAGGTGTCGATGCAGTTCTGGGGACAAGATCATGTGC
GCGGAGATGAAGATCAACGGCGGCATCATCATGCTCGGCGACCACTGCGG
CGAGGACGCGAGCAAGACGGAGGCCTCGATGACCATCTCGTACGAGGTCG
GGAAGGACGAGGCGGCTCCCCTGGCCAAGTCCTTCAAGGACAACGGCGGG
GAGGTCCTCGAGGAGGTGTCGATGCAGTTCTGGGGACAAGTGTGGGGTCG
ATGCAAAGACCCCTTTGGCCAACCGTGGGGCTTGTGCGAGGTACAGACCG
GCCCTACTACCTCCAACGAAGACATGGCCAAGGACATGGAAATCGGCGCC
AAGTTCGACTGGCGCTACACCTGGGCGGTTGAGGACATGCCTACTGTGTA
CTGTTACGGAGCGTGTGGGGTCGATGCAAAGACCCCTTTGGCCAACCGTG
GGGCTTGTGCGAGGTACAGACCGGCCCTACTACCTCCAACGAAGACATGG
CCAAGGACATGGAAATCGGCGCCAAGTTCGACTGGCGCTACACCTGGGCG
GTTGAGGACATGCCTACTGTGTACTGTTACGGAGCGATGTCCACAAGCGA
AGCGACCAGCCCCGCCATCAGCGAAGAGACCAACAAGAAGCTCCCCGCCG
CCTTCGCAGGAGCCGCCGCGGCCAAGCTCGCCATGGCCGGGCCCCCCGCG
TCCGCCTACTACACCTGGGACTCTTCCCCCGGCGGGACCACCAAGTTCAC
ATGCGGACCCTCGGTGGCCGGTGGCGACGCCTCCGCCGCTCTGGCGAAGG
ACGTCGACGGGGACGACGACGGCCTCGGCGTGAGGACCGCCGGCGGCTGC
AAGTGTGTGACGACGCTGCACACGGGGCCGTACAACGAGCTGATGAAGTG
CTACAAGGCGACGTTCGAGTGGGTCGAGACCAAGGGGTACGAGTCGCGCA
TGCCCGTGTTCGAGCTGTACGAGAACGACCCCAAGGACACCCCGCCCGAG
AAGCTCAAGACCAAGGTCTGCATCATGTCCACAAGCGAAGCGACCAGCCC
CGCCATCAGCGAAGAGACCAACAAGAAGCTCCCCGCCGCCTTCGCAGGAG
CCGCCGCGGCCAAGCTCGCCATGGCCGGGCCCCCCGCGTCCGCCTACTAC
ACCTGGGACTCTTCCCCCGGCGGGACCACCAAGTTCACATGCGGACCCTC
GGTGGCCGGTGGCGACGCCTCCGCCGCTCTGGCGAAGGACGTCGACGGGG
ACGACGACGGCCTCGGCGTGAGGACCGCCGGCGGCTGCAAGTGTGTGACG
ACGCTGCACACGGGGCCGTACAACGAGCTGATGAAGTGCTACAAGGCGAC
GTTCGAGTGGGTCGAGACCAAGGGGTACGAGTCGCGCATGCCCGTGTTCG
AGCTGTACGAGAACGACCCCAAGGACACCCCGCCCGAGAAGCTCAAGACC
AAGGTCTGCATC
back to top