mRNA_E-fasciculatus_F_contig14421.3217.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14421.3217.1
Unique NamemRNA_E-fasciculatus_F_contig14421.3217.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14421.3217.1 vs. uniprot
Match: A0A6H5KT97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT97_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 4.200e-101
Identity = 210/322 (65.22%), Postives = 227/322 (70.50%), Query Frame = 1 
Query:    1 TCDFHTPTKEPQPSIFAATAAAEP-------EAGAGARAGAAAQRVGAEGAAARECQCCVSCGASGGGAAGTMREGAGERRRGEQPLGEPWDERKE----------GEQELLQASGHSLAFSAKSGYSAGPEEKRRASGGGLSAHGSRTFADEEGSRPGSSRSLYSCSSRAQSLRARKLRAENIVDGIDHAAXXXXXXXXKLGGGTSISSSGSHRDFGGLGDSSRSSTSSLTNTGGSGRSTSYRPQQDSTGSERRRRGLLGGLKKGMGVVWEKIAADHPQPLPIDKTLTKEQXXXXXXXXERQRRNDWHTNSIAEQHVVRKL 915
            T DFHTPTK+PQP +FAATAAAEP         GAG+ AGAA QRVGAEG AA+ CQCC SCGASGG AAG+ REGAG+RR G Q   E      E          G   L  AS  SLAFSA SGYSAGP  KR ASGGGL+A G    ADEEGSRPGSSRSL S SSRAQSL    LRAENIVDGID A         +LGGG+  SS G+ R+ GGL DS RS  SSL +T GS RS SYRPQ DSTGSERRRRGLLGGLKKGMGVVWEKI+ADHPQPLPIDKTLTKEQ        ERQRRN+W TNS+AEQHV+R +
Sbjct:  235 TRDFHTPTKQPQPGVFAATAAAEPGGGGARTATGAGSAAGAAMQRVGAEGVAAQVCQCCASCGASGGAAAGSRREGAGDRRPGGQGQQEGVTHAYESFDCGNVIRVGASSLGWASARSLAFSASSGYSAGPGGKRGASGGGLNASGG-AIADEEGSRPGSSRSLNSYSSRAQSLXXXXLRAENIVDGIDLAGADARS---RLGGGSISSSGGNQREVGGLADSCRSG-SSLADTCGSDRSRSYRPQ-DSTGSERRRRGLLGGLKKGMGVVWEKISADHPQPLPIDKTLTKEQQRQKHLRLERQRRNEWQTNSVAEQHVLRSV 550
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BLAST of mRNA_E-fasciculatus_F_contig14421.3217.1 vs. uniprot
Match: D7G224_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G224_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 4.960e-87
Identity = 192/312 (61.54%), Postives = 203/312 (65.06%), Query Frame = 1 
Query:    1 TCDFHTPTKEPQPSIFAATAAAEPEAGAGARAG-------AAAQRVGAEGAAARECQCCVSCGASGGGAAGTMREGAGERRRGEQPLGEPWDERKEGEQELLQASGHSLAFSAKSGYSAGPEEKRRASGGGLSAHGSRTFADEEGSRPGSSRSLYSCSSRAQSLRARKLRAENIVDGIDHAAXXXXXXXXKLGGGTSISSSGSHRDFGGLGDSSRSSTSSLTNTGGSGRSTSYRPQQDSTGSERRRRGLLGGLKKGMGVVWEKIAADHPQPLPIDKTLTKEQXXXXXXXXERQRRNDWHTNSIAEQHVVRKL 915
            T DFHTP K+PQPS+FAATAAAEP A              AA QRVGAEG AARECQCC S GASGGGAAGT REGAG                    QELLQA                              +GS  FADE+GSRPGSSRSL SCS RAQSLRARKLRAENIVDGID A          LGGG+  SS GSHR+ GGL DS RS  SSL +TGGSGRS SYRPQ DSTGSERRRRGL GGLKKGMGVVWEKIAADHPQPLPIDKTLTKEQ        ERQRRN+W TNS+AEQHV+R +
Sbjct:  243 TRDFHTPRKQPQPSVFAATAAAEPGAEGXXXXXXXXXXXXAATQRVGAEGGAARECQCCASRGASGGGAAGTRREGAGXXXXXXXXX-----------QELLQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGS-AFADEDGSRPGSSRSLNSCSWRAQSLRARKLRAENIVDGIDLAGAAARSG---LGGGSISSSGGSHREIGGLADSCRSG-SSLADTGGSGRSKSYRPQ-DSTGSERRRRGLFGGLKKGMGVVWEKIAADHPQPLPIDKTLTKEQQRQKHLRLERQRRNEWQTNSVAEQHVLRSV 537
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BLAST of mRNA_E-fasciculatus_F_contig14421.3217.1 vs. uniprot
Match: A0A6H5JCZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 9.560e-14
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:  724 LLGGLKKGMGVVWEKIAADHPQPLPIDKTLTKEQXXXXXXXXERQRRNDWHTNSIAEQHVVRKL------KLW 924
            LLG +KKG  VVW K+ +DHP+PLPIDK+LTKE+        E  RRNDW TN++ EQHV  K+      K+W
Sbjct:  783 LLGSVKKGASVVWSKVTSDHPEPLPIDKSLTKEEWKAKHYQMEVARRNDWRTNTMGEQHVYTKVLKQEEEKVW 855
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14421.3217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KT97_9PHAE4.200e-10165.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G224_ECTSI4.960e-8761.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCZ2_9PHAE9.560e-1452.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14421contigE-fasciculatus_F_contig14421:148..3334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_002830.1
Hectar predicted targeting categoryother localisation
Exons4
Model size927
Cds size927
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14421.3217.1prot_E-fasciculatus_F_contig14421.3217.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14421 148..3334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927930.4876058-CDS-E-fasciculatus_F_contig14421:147..2671622927930.4876058-CDS-E-fasciculatus_F_contig14421:147..267Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14421 148..267 -
1695995755.5731266-CDS-E-fasciculatus_F_contig14421:147..2671695995755.5731266-CDS-E-fasciculatus_F_contig14421:147..267Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14421 148..267 -
1622927930.518161-CDS-E-fasciculatus_F_contig14421:1002..11221622927930.518161-CDS-E-fasciculatus_F_contig14421:1002..1122Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14421 1003..1122 -
1695995755.586099-CDS-E-fasciculatus_F_contig14421:1002..11221695995755.586099-CDS-E-fasciculatus_F_contig14421:1002..1122Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14421 1003..1122 -
1622927930.5367932-CDS-E-fasciculatus_F_contig14421:1782..21901622927930.5367932-CDS-E-fasciculatus_F_contig14421:1782..2190Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14421 1783..2190 -
1695995755.598826-CDS-E-fasciculatus_F_contig14421:1782..21901695995755.598826-CDS-E-fasciculatus_F_contig14421:1782..2190Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14421 1783..2190 -
1622927930.5501976-CDS-E-fasciculatus_F_contig14421:3055..33341622927930.5501976-CDS-E-fasciculatus_F_contig14421:3055..3334Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14421 3056..3334 -
1695995755.6103659-CDS-E-fasciculatus_F_contig14421:3055..33341695995755.6103659-CDS-E-fasciculatus_F_contig14421:3055..3334Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14421 3056..3334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14421.3217.1

>prot_E-fasciculatus_F_contig14421.3217.1 ID=prot_E-fasciculatus_F_contig14421.3217.1|Name=mRNA_E-fasciculatus_F_contig14421.3217.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=309bp
TCDFHTPTKEPQPSIFAATAAAEPEAGAGARAGAAAQRVGAEGAAARECQ
CCVSCGASGGGAAGTMREGAGERRRGEQPLGEPWDERKEGEQELLQASGH
SLAFSAKSGYSAGPEEKRRASGGGLSAHGSRTFADEEGSRPGSSRSLYSC
SSRAQSLRARKLRAENIVDGIDHAAAAAAAARSKLGGGTSISSSGSHRDF
GGLGDSSRSSTSSLTNTGGSGRSTSYRPQQDSTGSERRRRGLLGGLKKGM
GVVWEKIAADHPQPLPIDKTLTKEQQRQKHLHLERQRRNDWHTNSIAEQH
VVRKLKLW*
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mRNA from alignment at E-fasciculatus_F_contig14421:148..3334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14421.3217.1 ID=mRNA_E-fasciculatus_F_contig14421.3217.1|Name=mRNA_E-fasciculatus_F_contig14421.3217.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3187bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14421:148..3334- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGTGCGACTTCCACACGCCCACGAAGGAGCCACAGCCTAGCATCTTCGC
GGCTACAGCGGCAGCTGAGCCGGAAGCGGGAGCAGGGGCCCGGGCAGGAG
CAGCCGCGCAAAGAGTGGGGGCGGAGGGGGCAGCTGCACGAGAATGTCAG
TGCTGCGTTTCTTGCGGCGCGAGCGGGGGGGGCGCAGCTGGTACGATGAG
GGAGGGGGCGGGGGAACGGCGCCGGGGGGAACAGCCCCTGGGGGAGCCGT
GGGATGAGCGGAAGGAGGGGGAGCAGGAGGTGGGTGCCAAGCCGATAGGC
GACTGGTTTGATCACGCTTCTCGCCTGACGTCGTGTTTCCCGTCTTTTAA
AGAATTTATTGTGACTCCTCGCTTTGTGTGTCGACCTCACACGGCAATAA
GCTATATAAGTACTTGGTGATTTTGTTGTACAGGGTGTGAGATATGCGTA
CGGGTCGTTCGATTGTGAAAATCTGATCGGCGTCGGTGCGTCGAGCCCTA
ATCCCTTGGTTGGGTAGGTGTTTCGTTGGGAAAGTGTCAATAAAAAGGCA
TGATAGGCGTGAGGGGGCTCTGTTTTCTCGTGAGGCCACTCCGTTGTTGC
TGTCGTGATGCCGAAAAAGACGCTCTCCGTCGGCCCTAGTTACCTTCCAG
AAGCCGTATCTCGCGCCGCCTGATGGTTCACGCTTTCCACAGCAGCAGCA
ACAGCAGCAGCGGCAGCAGTAGCGGTAGCAGCCTTTCGTAGACGCTCATC
TCTTGACATTTGGTTGGAGTTCGAGCTACGTGCACCTTGGCAGCAGGGTT
ACACTTCTCCATGGTTGTGGGGAAGCAGCGTTCTCGCTCCCTTTCGGAAC
TCCGGCAGGCTGACCGGCCGCGATTAGTTTTCCCCGCCGGCGTGACGCAT
CTCTGCCCCCTTCGCTTCTTCCTCTCAGTCTTTGGCGAGGTGTTGCCGCA
ACTGCCGAGCCGCAAAACCACCCATCCTCAACCTCCCTCTCCGGCCACAC
CGGCCGTTGATTGACTCCTGTTGGCAGATTTCTTCCGTGTGTATATACAA
ACCACGGTAGGTTTAGTTACCTCGTGCCTGTATCCCCTTTGCCCCCGCCG
ATACCGACCTCTGTTCTCTCTCTCGCCGTTCGCTCCGGCGGCAGCTGCTG
CAGGCCTCCGGCCACAGCTTAGCCTTCAGCGCCAAGTCGGGGTACTCGGC
CGGGCCGGAGGAGAAGCGCCGCGCCTCCGGCGGCGGCTTGAGCGCCCACG
GCAGCCGCACCTTCGCCGACGAGGAGGGCTCCCGCCCCGGCAGCAGCCGG
TCTCTCTACAGTTGCTCCTCGAGGGCGCAGAGCCTCCGGGCGCGGAAGCT
CCGGGCGGAGAACATCGTGGACGGTATCGACCACGCCGCCGCCGCCGCCG
CGGCCGCTCGTTCCAAGCTAGGCGGCGGCACCAGCATCAGCAGCAGCGGC
AGCCACCGCGATTTTGGTGGGCTGGGCGACAGCTCCCGGTCCAGCACCAG
CAGCCTCACCAACACCGGCGGGAGTGGCAGAAGCACCTCTTACCGCCCAC
AGGTGCGTGCGACCCCGGGACGAGAGCGTGGTAGCAGGGCTGCTGCGATG
AAAGGGTTTGAGTCGTGGGGGATTTGTTGCGGGGCAGAGAGAATGGACCG
GCGATGACAGCAGGGGGCGGTTGCGGGGCGGCGTTAAGAGATACTTTAGC
AGACCGTCGTGGCAGGCAGGCGTTACGCGACTCCCTCGCCCTTGAAGCAT
ACGTACCCATCGAGGAAAGCAGGTGGTGGGATAGCACTCACGCATGTACT
GCTGTAGCATGGTGGTGAGTGTTACTGCATCGGTCCCCCGCCGCATGGGG
GTCCAATTGAAATAGTACGAATGTTCTTTTTTTCGGCAAAACGTATGATA
GGCGGTTTGTTTGTCTCGGAAAACCTCGACAAGCCTTATCGCCACGTCTT
TATCAACCCAACATATGTTGGATTGGCTAGTCGCATATGTATGCAACGAC
AGCAGCAGCATCAACAGCAGAGAATAGCAGCCCACCCTGTTCGGGGTTTT
CAACCTTGCTTGTCACATGAGTATGTGTAATAACTCGGTACTCACGATCT
ACCGGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCG
AATTTCCCACAACTCGAACTCTGTTGATTCCTGGCCGTAACTACGACAAC
ATCGAAACGGAGCAGGACAGTACTGGCAGCGAGCGGCGACGTCGAGGCCT
TTTAGGGGGGCTCAAGAAGGGGATGGGGGTGGTGTGGGAAAAGATTGCGG
CCGACCACCCACAGCCACTGCCCATCGATAAGGTGCGTGGGTAAGAGGCA
AGCGCAACAAAATCGGTCTCGAAGCACGATCTGATTTTTTTGTGTGTGGT
GAGGTAGGTGGTTGCAAGAAAAGTGGCGAGGTATCTAAAGTGGTTGAAAC
GGAAAGAGAAAGAAGAGCAGCAGACAGCGGCAGCTGGCGTGTTTGTGTGT
TTTTATTTTCATGGCGAAAACGGCGGCAACGACTTGAGTGATCCGCAACC
TGGTGAACGTTGTCCGGCCCGGCCCTGTGGAGGACAAGAAGACGCGCGAG
AGAGAGAGAGCTGTTTTCCTGTCCACCATCAGAACGGAACCATATCCCTG
TTCCTTGGTGGACCTCTTTAAATCTTAATCTTATCCGTGTCTCATCCCTT
GCCTCTCTTTTCTCCGCACACGATAAACGAGCTGCCCCCCCCCCATGCCA
CCCTCGTAGCACAAAAATTCCAGGTGTTTAAGTTAGTGTAGTTTTCCTTC
TCTTTGTTCCCTGGTTGCATTTGCGTAGTTTCGGTTTCCAACACATGATG
GTAAAACATGAAGACAACGTGATTTGCACCCCTGCTGCAAGGCCTTTCGT
CTAGTGATTCTGCGCCTTGGTGCATCTTTGTTCGGGCTCCACTCTCTTTG
TTTTCCTCGCGTGCGTGAAAATTGACACCGCCCCGGATTTTTTCCGTTGT
TCGAAACCATCTCGGCGCCGCGTTCTTCTCTCTTCTATTCTTCTTCGCGC
ACTGCGTTGTGCGTCAGACGTTGACGAAGGAGCAACAGCGGCAGAAGCAT
TTGCACCTTGAGAGGCAGAGGCGGAATGACTGGCACACCAACAGCATTGC
GGAGCAACACGTGGTACGCAAACTGAAGCTGTGGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14421:148..3334-

>mRNA_E-fasciculatus_F_contig14421.3217.1 ID=mRNA_E-fasciculatus_F_contig14421.3217.1|Name=mRNA_E-fasciculatus_F_contig14421.3217.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14421:148..3334- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGTGCGACTTCCACACGCCCACGAAGGAGCCACAGCCTAGCATCTTCGC
GGCTACAGCGGCAGCTGAGCCGGAAGCGGGAGCAGGGGCCCGGGCAGGAG
CAGCCGCGCAAAGAGTGGGGGCGGAGGGGGCAGCTGCACGAGAATGTCAG
TGCTGCGTTTCTTGCGGCGCGAGCGGGGGGGGCGCAGCTGGTACGATGAG
GGAGGGGGCGGGGGAACGGCGCCGGGGGGAACAGCCCCTGGGGGAGCCGT
GGGATGAGCGGAAGGAGGGGGAGCAGGAGACGTGCGACTTCCACACGCCC
ACGAAGGAGCCACAGCCTAGCATCTTCGCGGCTACAGCGGCAGCTGAGCC
GGAAGCGGGAGCAGGGGCCCGGGCAGGAGCAGCCGCGCAAAGAGTGGGGG
CGGAGGGGGCAGCTGCACGAGAATGTCAGTGCTGCGTTTCTTGCGGCGCG
AGCGGGGGGGGCGCAGCTGGTACGATGAGGGAGGGGGCGGGGGAACGGCG
CCGGGGGGAACAGCCCCTGGGGGAGCCGTGGGATGAGCGGAAGGAGGGGG
AGCAGGAGCTGCTGCAGGCCTCCGGCCACAGCTTAGCCTTCAGCGCCAAG
TCGGGGTACTCGGCCGGGCCGGAGGAGAAGCGCCGCGCCTCCGGCGGCGG
CTTGAGCGCCCACGGCAGCCGCACCTTCGCCGACGAGGAGGGCTCCCGCC
CCGGCAGCAGCCGGTCTCTCTACAGTTGCTCCTCGAGGGCGCAGAGCCTC
CGGGCGCGGAAGCTCCGGGCGGAGAACATCGTGGACGGTATCGACCACGC
CGCCGCCGCCGCCGCGGCCGCTCGTTCCAAGCTAGGCGGCGGCACCAGCA
TCAGCAGCAGCGGCAGCCACCGCGATTTTGGTGGGCTGGGCGACAGCTCC
CGGTCCAGCACCAGCAGCCTCACCAACACCGGCGGGAGTGGCAGAAGCAC
CTCTTACCGCCCACAGCTGCTGCAGGCCTCCGGCCACAGCTTAGCCTTCA
GCGCCAAGTCGGGGTACTCGGCCGGGCCGGAGGAGAAGCGCCGCGCCTCC
GGCGGCGGCTTGAGCGCCCACGGCAGCCGCACCTTCGCCGACGAGGAGGG
CTCCCGCCCCGGCAGCAGCCGGTCTCTCTACAGTTGCTCCTCGAGGGCGC
AGAGCCTCCGGGCGCGGAAGCTCCGGGCGGAGAACATCGTGGACGGTATC
GACCACGCCGCCGCCGCCGCCGCGGCCGCTCGTTCCAAGCTAGGCGGCGG
CACCAGCATCAGCAGCAGCGGCAGCCACCGCGATTTTGGTGGGCTGGGCG
ACAGCTCCCGGTCCAGCACCAGCAGCCTCACCAACACCGGCGGGAGTGGC
AGAAGCACCTCTTACCGCCCACAGCAGGACAGTACTGGCAGCGAGCGGCG
ACGTCGAGGCCTTTTAGGGGGGCTCAAGAAGGGGATGGGGGTGGTGTGGG
AAAAGATTGCGGCCGACCACCCACAGCCACTGCCCATCGATAAGCAGGAC
AGTACTGGCAGCGAGCGGCGACGTCGAGGCCTTTTAGGGGGGCTCAAGAA
GGGGATGGGGGTGGTGTGGGAAAAGATTGCGGCCGACCACCCACAGCCAC
TGCCCATCGATAAGACGTTGACGAAGGAGCAACAGCGGCAGAAGCATTTG
CACCTTGAGAGGCAGAGGCGGAATGACTGGCACACCAACAGCATTGCGGA
GCAACACGTGGTACGCAAACTGAAGCTGTGGTAGACGTTGACGAAGGAGC
AACAGCGGCAGAAGCATTTGCACCTTGAGAGGCAGAGGCGGAATGACTGG
CACACCAACAGCATTGCGGAGCAACACGTGGTACGCAAACTGAAGCTGTG
GTAG
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