prot_E-fasciculatus_F_contig1442.3215.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1442.3215.1
Unique Nameprot_E-fasciculatus_F_contig1442.3215.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length831
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI)

HSP 1 Score: 468 bits (1203), Expect = 9.150e-146
Identity = 561/654 (85.78%), Postives = 566/654 (86.54%), Query Frame = 0 
Query:  139 NTRSSMMPVEGPGGARPSEISEISVDHFPNTKNANPSGHG-VPGPSVPGATAAVVRGDIANGVDMFLECMSRRRLKLAXXXXXXXXAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLDELNKRRP-SXXXXXXXXRNGDTNSVEFSREVGHADSDKRSSSSSGRSTGIGDVARKEAAXXXXXXXXXXXXXXXXXGSENVTEAFFSAGAGTTPGTAGIRTIAGPNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWVLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEG 789
            NT+SSMMPVEGP GARPSEI   SVD FPNT NAN SG G VPGPSVPGATAAVVRGDIANGV+MFLECMSRRRLKLA        AAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAM+ACQLRPTIVTFSTLISRAGACRRVRLAERFFREM      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLDELNKRRP SXXXXXXXXRNGDTN+ EF REVGH DSD RSSS  GR TGIGDVARKEAA                  SENVTEAFFS   G TPG AGI TIAGPN                                 GAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETW+LLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEG
Sbjct:    7 NTKSSMMPVEGPAGARPSEI---SVDPFPNTANANASGGGGVPGPSVPGATAAVVRGDIANGVEMFLECMSRRRLKLAAAT-----AAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLDELNKRRPNSXXXXXXXXRNGDTNAAEFVREVGHVDSDTRSSS--GRGTGIGDVARKEAAGRGPATAMAGTVSADPADSENVTEAFFSGTVGITPGPAGIDTIAGPNPLPPPMATAEAITRGGATTGEGGSGETATARGRGAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEG 650
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BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Match: A0A7S2D4Z0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D4Z0_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 2.220e-11
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0 
Query:  236 CNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGI 299
            CN  LR LGD G ++  V  +EAMVA  +RPT VT+ TLISRAGA R+ +LA R +R+ML  G+
Sbjct:    2 CNKLLRVLGDGGHLEAMVGVFEAMVASGVRPTQVTYGTLISRAGAHRQPKLASRMYRDMLRRGL 65
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BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.890e-9
Identity = 39/63 (61.90%), Postives = 44/63 (69.84%), Query Frame = 0 
Query:  226 ASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAE 288
            AS +   V  CN FLR LGD+GR+ D V AYEAMV   L PTIVTFSTLISRAGA  +  LA+
Sbjct:  115 ASKRPPQVRDCNRFLRVLGDSGRLQDAVQAYEAMVKAGLMPTIVTFSTLISRAGAAGKTALAQ 177
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BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC)

HSP 1 Score: 62.8 bits (151), Expect = 2.610e-6
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 0 
Query:  683 LESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWVLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTE 788
            L   L+Q+F QA  ++ AF + E M+++R +PD  T   L +A+                R   H   I+ +TYSA+LGAC RA+ + +AF + + M   GV P E
Sbjct:  369 LTRPLMQMFSQARLLNRAFDMFERMIQQRQAPDQATLQTLFDAIXXXXXXXXXXXXXXXMRESTH---ISRVTYSAVLGACRRARTIVKAFLLFKDMMAAGVTPGE 471
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BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Match: A0A482S411_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S411_9ARCH)

HSP 1 Score: 56.6 bits (135), Expect = 5.100e-5
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 0 
Query:  236 CNVFLRALGDAGRIDDCVAAYEAMV--ACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 294
            CNV LR LGD G +  C   ++ M+  + +L P++VT+STLISRAG  +RV LA  FF  M
Sbjct:  138 CNVLLRVLGDQGALSFCTQIFQLMLTHSPRLSPSLVTYSTLISRAGTWQRVDLARYFFDHM 198
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSJ6_ECTSI9.150e-14685.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2D4Z0_9EUKA2.220e-1154.69Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A836CEM1_9STRA4.890e-961.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4F8K7_VITBC2.610e-633.96Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A482S411_9ARCH5.100e-549.18Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 419..562
e-value: 1.2E-36
score: 128.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 229..399
e-value: 5.7E-46
score: 159.3
coord: 683..831
e-value: 1.6E-29
score: 105.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 301..348
e-value: 4.1E-13
score: 49.3
coord: 378..418
e-value: 5.6E-11
score: 42.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 269..303
e-value: 5.8E-6
score: 24.2
coord: 755..788
e-value: 3.3E-6
score: 24.9
coord: 479..513
e-value: 3.1E-6
score: 25.0
coord: 306..337
e-value: 1.5E-7
score: 29.2
coord: 444..477
e-value: 4.1E-9
score: 34.1
coord: 339..372
e-value: 8.5E-9
score: 33.1
coord: 409..443
e-value: 1.3E-7
score: 29.4
coord: 375..407
e-value: 7.4E-8
score: 30.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 748..798
e-value: 2.8E-9
score: 36.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 269..299
e-value: 0.0049
score: 17.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 715..749
score: 7.432
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 512..546
score: 7.892
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 752..786
score: 11.641
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 267..301
score: 10.534
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 407..441
score: 12.288
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 442..476
score: 12.31
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 787..821
score: 9.525
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 477..511
score: 10.687
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 337..371
score: 12.671
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 302..336
score: 12.233
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 680..714
score: 7.048
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 232..266
score: 8.111
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 372..406
score: 11.674
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 423..540
e-value: 6.4E-15
score: 55.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 241..497
coord: 687..830
coord: 475..542

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1442contigE-fasciculatus_F_contig1442:7440..17652 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1442.3215.1mRNA_E-fasciculatus_F_contig1442.3215.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1442 7440..17652 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1442.3215.1 ID=prot_E-fasciculatus_F_contig1442.3215.1|Name=mRNA_E-fasciculatus_F_contig1442.3215.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=831bp
MTRSGAFPHGSQRCASSLGGSCGMTPAWVQSAGLTQNLLPTREQQQHRRS
LHQLQGRSWCRGSRANSGKCSTALGLCSDLAGGGVVDLQRQRQRRRRRRR
RPFSPERSQQERSNGPAPHREAAAATTTTTTTMALSSSNTRSSMMPVEGP
GGARPSEISEISVDHFPNTKNANPSGHGVPGPSVPGATAAVVRGDIANGV
DMFLECMSRRRLKLAAAAAAAGTAAASPKQGGVPACNVFLRALGDAGRID
DCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGIT
PDVQAINSLINAFAKAGSPDQALKAFDQMSRYGVTPSVITFNTLIDACGR
AGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMR
ARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLI
DACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAV
LEHMLDVGIEPTEVTYTSLLTQCARLGQADRAGIVLDELNKRRPSSSGGG
GGGRNGDTNSVEFSREVGHADSDKRSSSSSGRSTGIGDVARKEAAGGGEA
AAMAGTASAAAAGSENVTEAFFSAGAGTTPGTAGIRTIAGPNTTPPPVAA
TEATTRGGSTVGGGSGESATTPGGGAWRMNRKLESDLLQLFGQADQVDAA
FKVLEGMVERRDSPDGETWVLLLNAVDTAGALDKAVELMERSRAEGHGSE
INELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRH
SRDSKAAVEVFEAMETEGVRPGVRSYTSLLK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf