mRNA_E-fasciculatus_F_contig1442.3215.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI) HSP 1 Score: 468 bits (1203), Expect = 9.150e-146 Identity = 561/654 (85.78%), Postives = 566/654 (86.54%), Query Frame = 1
Query: 415 NTRSSMMPVEGPGGARPSEISEISVDHFPNTKNANPSGHG-VPGPSVPGATAAVVRGDIANGVDMFLECMSRRRLKLAXXXXXXXXAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLDELNKRRP-SXXXXXXXXRNGDTNSVEFSREVGHADSDKRSSSSSGRSTGIGDVARKEAAXXXXXXXXXXXXXXXXXGSENVTEAFFSAGAGTTPGTAGIRTIAGPNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWVLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEG 2367
NT+SSMMPVEGP GARPSEI SVD FPNT NAN SG G VPGPSVPGATAAVVRGDIANGV+MFLECMSRRRLKLA AAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAM+ACQLRPTIVTFSTLISRAGACRRVRLAERFFREM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLDELNKRRP SXXXXXXXXRNGDTN+ EF REVGH DSD RSSS GR TGIGDVARKEAA SENVTEAFFS G TPG AGI TIAGPN GAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETW+LLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEG
Sbjct: 7 NTKSSMMPVEGPAGARPSEI---SVDPFPNTANANASGGGGVPGPSVPGATAAVVRGDIANGVEMFLECMSRRRLKLAAAT-----AAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLDELNKRRPNSXXXXXXXXRNGDTNAAEFVREVGHVDSDTRSSS--GRGTGIGDVARKEAAGRGPATAMAGTVSADPADSENVTEAFFSGTVGITPGPAGIDTIAGPNPLPPPMATAEAITRGGATTGEGGSGETATARGRGAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEG 650
BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Match: A0A7S2D4Z0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D4Z0_9EUKA) HSP 1 Score: 71.2 bits (173), Expect = 2.220e-11 Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1
Query: 706 CNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGI 897
CN LR LGD G ++ V +EAMVA +RPT VT+ TLISRAGA R+ +LA R +R+ML G+
Sbjct: 2 CNKLLRVLGDGGHLEAMVGVFEAMVASGVRPTQVTYGTLISRAGAHRQPKLASRMYRDMLRRGL 65
BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 4.890e-9 Identity = 39/63 (61.90%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 676 ASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAE 864
AS + V CN FLR LGD+GR+ D V AYEAMV L PTIVTFSTLISRAGA + LA+
Sbjct: 115 ASKRPPQVRDCNRFLRVLGDSGRLQDAVQAYEAMVKAGLMPTIVTFSTLISRAGAAGKTALAQ 177
BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC) HSP 1 Score: 62.8 bits (151), Expect = 2.610e-6 Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 1
Query: 2047 LESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWVLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTE 2364
L L+Q+F QA ++ AF + E M+++R +PD T L +A+ R H I+ +TYSA+LGAC RA+ + +AF + + M GV P E
Sbjct: 369 LTRPLMQMFSQARLLNRAFDMFERMIQQRQAPDQATLQTLFDAIXXXXXXXXXXXXXXXMRESTH---ISRVTYSAVLGACRRARTIVKAFLLFKDMMAAGVTPGE 471
BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Match: A0A482S411_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S411_9ARCH) HSP 1 Score: 56.6 bits (135), Expect = 5.100e-5 Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 706 CNVFLRALGDAGRIDDCVAAYEAMV--ACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 882
CNV LR LGD G + C ++ M+ + +L P++VT+STLISRAG +RV LA FF M
Sbjct: 138 CNVLLRVLGDQGALSFCTQIFQLMLTHSPRLSPSLVTYSTLISRAGTWQRVDLARYFFDHM 198 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1442.3215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1442.3215.1 >prot_E-fasciculatus_F_contig1442.3215.1 ID=prot_E-fasciculatus_F_contig1442.3215.1|Name=mRNA_E-fasciculatus_F_contig1442.3215.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=831bp MTRSGAFPHGSQRCASSLGGSCGMTPAWVQSAGLTQNLLPTREQQQHRRSback to top mRNA from alignment at E-fasciculatus_F_contig1442:7440..17652+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1442.3215.1 ID=mRNA_E-fasciculatus_F_contig1442.3215.1|Name=mRNA_E-fasciculatus_F_contig1442.3215.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=10213bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1442:7440..17652+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1442:7440..17652+ >mRNA_E-fasciculatus_F_contig1442.3215.1 ID=mRNA_E-fasciculatus_F_contig1442.3215.1|Name=mRNA_E-fasciculatus_F_contig1442.3215.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4986bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1442:7440..17652+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |