mRNA_E-fasciculatus_F_contig14417.3214.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14417.3214.1
Unique NamemRNA_E-fasciculatus_F_contig14417.3214.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14417.3214.1 vs. uniprot
Match: A0A6H5K749_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K749_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 7.010e-5
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 2 
Query:    5 DRGTKSPGGFWAGVFDLLCCRRR 73
            DRGTKSPGGFWAGVFDLL CRRR
Sbjct: 1073 DRGTKSPGGFWAGVFDLLFCRRR 1095
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14417.3214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K749_9PHAE7.010e-595.65WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14417contigE-fasciculatus_F_contig14417:702..1526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size825
Cds size489
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927930.0370991-UTR-E-fasciculatus_F_contig14417:701..10371622927930.0370991-UTR-E-fasciculatus_F_contig14417:701..1037Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14417 702..1037 +
1695995755.327743-UTR-E-fasciculatus_F_contig14417:701..10371695995755.327743-UTR-E-fasciculatus_F_contig14417:701..1037Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14417 702..1037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927930.0537884-CDS-E-fasciculatus_F_contig14417:1037..15261622927930.0537884-CDS-E-fasciculatus_F_contig14417:1037..1526Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14417 1038..1526 +
1695995755.3358545-CDS-E-fasciculatus_F_contig14417:1037..15261695995755.3358545-CDS-E-fasciculatus_F_contig14417:1037..1526Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14417 1038..1526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14417.3214.1prot_E-fasciculatus_F_contig14417.3214.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14417 1038..1526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14417.3214.1

>prot_E-fasciculatus_F_contig14417.3214.1 ID=prot_E-fasciculatus_F_contig14417.3214.1|Name=mRNA_E-fasciculatus_F_contig14417.3214.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=163bp
MGGVGLCGIASRQNGPRCCGYSHAFGGGCEHQAWYFLVHASCGKCSSPAR
QLGAAWGGAQLACLCSPLVFRHRRRQQAPHGLVATNAASQRITPPPVAVP
LPGTVPRGRQSRGEVSPVVDSAVGTRRRTIVLRHFFVSGWFATLAAVLLP
QAAAGFGVWFTDT
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mRNA from alignment at E-fasciculatus_F_contig14417:702..1526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14417.3214.1 ID=mRNA_E-fasciculatus_F_contig14417.3214.1|Name=mRNA_E-fasciculatus_F_contig14417.3214.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=825bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14417:702..1526+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGATCGCGGTACGAAGTCGCCGGGGGGATTCTGGGCAGGCGTTTTCG
ACCTCCTTTGCTGTCGCAGAAGATGATGGATGGAGGCGTGTTCTGATTTT
TTACCTGTGTGGGTGTTTGTCATCGCTCTTTATTCCGAATACTTCATGCA
GCAGCCGAAAGGCCCGGGCAGTGATTGTATTCAGTAGGAGGATGGATGTG
GGGGTTTGGCATGGGTATCGTCGCGTGATTGGGAGGGAAGAAAAAAAGTA
GTTTGTATTCTGCACGGGTTCCAACACGTTCCACGCGGCATTAGAGTTTT
GAAGTATTGTTTGACTGCTGTTGCGTGTTAGTCGAGATGGGGGGCGTGGG
GTTGTGCGGCATAGCCAGCCGGCAGAACGGACCTAGATGCTGCGGGTATT
CACACGCGTTCGGGGGGGGATGTGAGCACCAGGCGTGGTATTTTTTGGTG
CACGCATCTTGTGGAAAGTGCTCTTCCCCTGCCCGGCAGTTGGGGGCCGC
TTGGGGGGGGGCGCAGCTCGCGTGTTTGTGTTCTCCCCTTGTATTTCGGC
ACCGCCGCCGGCAGCAAGCTCCACACGGATTGGTTGCTACCAATGCAGCT
AGCCAAAGAATCACCCCGCCGCCGGTGGCAGTCCCGCTGCCTGGAACAGT
CCCGCGGGGACGACAGTCCCGCGGGGAGGTCAGTCCTGTCGTTGACAGTG
CCGTGGGGACGAGAAGGAGAACAATCGTTTTGCGGCATTTTTTTGTTTCT
GGTTGGTTTGCGACTTTGGCTGCTGTTTTACTGCCGCAGGCGGCGGCTGG
TTTTGGGGTGTGGTTCACCGACACC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14417:702..1526+

>mRNA_E-fasciculatus_F_contig14417.3214.1 ID=mRNA_E-fasciculatus_F_contig14417.3214.1|Name=mRNA_E-fasciculatus_F_contig14417.3214.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=978bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14417:702..1526+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGGCGTGGGGTTGTGCGGCATAGCCAGCCGGCAGAACGGACCTAG
ATGCTGCGGGTATTCACACGCGTTCGGGGGGGGATGTGAGCACCAGGCGT
GGTATTTTTTGGTGCACGCATCTTGTGGAAAGTGCTCTTCCCCTGCCCGG
CAGTTGGGGGCCGCTTGGGGGGGGGCGCAGCTCGCGTGTTTGTGTTCTCC
CCTTGTATTTCGGCACCGCCGCCGGCAGCAAGCTCCACACGGATTGGTTG
CTACCAATGCAGCTAGCCAAAGAATCACCCCGCCGCCGGTGGCAGTCCCG
CTGCCTGGAACAGTCCCGCGGGGACGACAGTCCCGCGGGGAGGTCAGTCC
TGTCGTTGACAGTGCCGTGGGGACGAGAAGGAGAACAATCGTTTTGCGGC
ATTTTTTTGTTTCTGGTTGGTTTGCGACTTTGGCTGCTGTTTTACTGCCG
CAGGCGGCGGCTGGTTTTGGGGTGTGGTTCACCGACACCATGGGGGGCGT
GGGGTTGTGCGGCATAGCCAGCCGGCAGAACGGACCTAGATGCTGCGGGT
ATTCACACGCGTTCGGGGGGGGATGTGAGCACCAGGCGTGGTATTTTTTG
GTGCACGCATCTTGTGGAAAGTGCTCTTCCCCTGCCCGGCAGTTGGGGGC
CGCTTGGGGGGGGGCGCAGCTCGCGTGTTTGTGTTCTCCCCTTGTATTTC
GGCACCGCCGCCGGCAGCAAGCTCCACACGGATTGGTTGCTACCAATGCA
GCTAGCCAAAGAATCACCCCGCCGCCGGTGGCAGTCCCGCTGCCTGGAAC
AGTCCCGCGGGGACGACAGTCCCGCGGGGAGGTCAGTCCTGTCGTTGACA
GTGCCGTGGGGACGAGAAGGAGAACAATCGTTTTGCGGCATTTTTTTGTT
TCTGGTTGGTTTGCGACTTTGGCTGCTGTTTTACTGCCGCAGGCGGCGGC
TGGTTTTGGGGTGTGGTTCACCGACACC
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