mRNA_E-fasciculatus_F_contig14416.3212.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14416.3212.1
Unique NamemRNA_E-fasciculatus_F_contig14416.3212.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14416.3212.1 vs. uniprot
Match: D8LBS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS1_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 1.860e-71
Identity = 181/206 (87.86%), Postives = 185/206 (89.81%), Query Frame = 1 
Query:    1 MQEDQDFEEDDGDELSAMAWESAIRGKSGREIAQLHESWAAAFLSRGSFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGDFSAAAASSKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAHGVRAVSYQMTGNFLAACNEHEAAAKLAEQRQALPLAPALALGMETNFGIR 618
            MQE QDFEEDD  ELSAMAWESAIRGKSGREIA LH+SWAAAFL+RGSFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGD          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +RA+SYQMTGNFLAACNEHEAAAKLAEQRQ  PLAPA ALGMETNFGIR
Sbjct:    1 MQEHQDFEEDDDGELSAMAWESAIRGKSGREIAHLHQSWAAAFLARGSFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRAMSYQMTGNFLAACNEHEAAAKLAEQRQVHPLAPAFALGMETNFGIR 206
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BLAST of mRNA_E-fasciculatus_F_contig14416.3212.1 vs. uniprot
Match: A0A6H5KDL5_9PHAE (eIF-5a domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.080e-13
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = -2 
Query:  258 MKARRERVAAALQSPRWISQMARLAITDNTKGASSVPSAIFRAIFELAAAAEKSP 422
            MKARRERVAAALQSPRWISQMARL ITDNTKGAS V SAIFRA+F    +A + P
Sbjct:    1 MKARRERVAAALQSPRWISQMARLIITDNTKGASPVSSAIFRAVFNFPRSACRKP 55
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14416.3212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBS1_ECTSI1.860e-7187.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDL5_9PHAE1.080e-1378.18eIF-5a domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14416contigE-fasciculatus_F_contig14416:257..1424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_002920.1
Exons3
Model size621
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14416.3212.1prot_E-fasciculatus_F_contig14416.3212.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14416 257..1424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927929.960314-CDS-E-fasciculatus_F_contig14416:256..4151622927929.960314-CDS-E-fasciculatus_F_contig14416:256..415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14416 257..415 +
1695995755.303321-CDS-E-fasciculatus_F_contig14416:256..4151695995755.303321-CDS-E-fasciculatus_F_contig14416:256..415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14416 257..415 +
1622927929.9736679-CDS-E-fasciculatus_F_contig14416:683..10001622927929.9736679-CDS-E-fasciculatus_F_contig14416:683..1000Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14416 684..1000 +
1695995755.31137-CDS-E-fasciculatus_F_contig14416:683..10001695995755.31137-CDS-E-fasciculatus_F_contig14416:683..1000Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14416 684..1000 +
1622927929.9875863-CDS-E-fasciculatus_F_contig14416:1279..14241622927929.9875863-CDS-E-fasciculatus_F_contig14416:1279..1424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14416 1280..1424 +
1695995755.319324-CDS-E-fasciculatus_F_contig14416:1279..14241695995755.319324-CDS-E-fasciculatus_F_contig14416:1279..1424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14416 1280..1424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14416.3212.1

>prot_E-fasciculatus_F_contig14416.3212.1 ID=prot_E-fasciculatus_F_contig14416.3212.1|Name=mRNA_E-fasciculatus_F_contig14416.3212.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=207bp
MQEDQDFEEDDGDELSAMAWESAIRGKSGREIAQLHESWAAAFLSRGSFN
KAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGDFSAAAASSKIAL
KIAEGTDDAPLVLSVMANRAICEIHLGDCKAAATRSRRAFIRAEAEGRPE
AVLLAHGVRAVSYQMTGNFLAACNEHEAAAKLAEQRQALPLAPALALGME
TNFGIR*
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mRNA from alignment at E-fasciculatus_F_contig14416:257..1424+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14416.3212.1 ID=mRNA_E-fasciculatus_F_contig14416.3212.1|Name=mRNA_E-fasciculatus_F_contig14416.3212.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1168bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14416:257..1424+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAGAGGATCAAGACTTCGAGGAAGACGATGGTGATGAGCTATCGGC
GATGGCTTGGGAATCGGCGATCCGAGGAAAGAGCGGCCGAGAGATCGCAC
AACTCCACGAGAGCTGGGCGGCAGCTTTTCTCTCGCGCGGGTCCTTCAAC
AAAGCCCAGGTTGGGAACAAAATGCATCGAATGCTGCCGCTGGCTCGGAG
GATTGCCATTCATAATAATAGTATGTGCTACGGGCATAAATGTACGTCTA
CGGGCAAAAATGTACGTGTTGCCACAGCAGGCTTCTTGTGGTCCTTGCTC
ATGACGTGATATGAACTTGGTACAATCCACAGATAAACACAGCACTACGG
CCTCACCAAAATCAGGTGGCCTTGCGCGCGCCTTTTTCGATTTAAACCCT
TTTTTCTTCCGACACCAACGAACACAGGAACACCTCGACCACGCCCTCGA
AGCATGGACCGGCTACGACGAGCCCGGCCTCCAGGCCCGCGCATGGTGCC
TGAAGGCGTCGTGCAGCGGCGAGGCCGGCGACTTCTCTGCCGCTGCGGCG
AGCTCAAAAATTGCCCTGAAGATCGCGGAGGGCACGGACGACGCCCCTTT
GGTGTTATCCGTAATGGCCAACCGCGCCATCTGCGAGATCCACCTCGGGG
ACTGCAAGGCCGCCGCCACTCGCTCTCGGCGCGCCTTCATCAGGGCCGAA
GCGGAGGGCAGGCCTGAGGCAGTCCTTTTGGCGCACGGTGTCCGGTACGT
GAGCGTTTCTTGCCATCGGCTGGAGATACAATACATACAGCAGTGGAGTT
TTCTGATGTTGTCGATGTCGCTACTGCAAGTGCAACCCCGTAGTCTAAGC
GTCGAAGGAAGTTCCTGCTGGACAGCTGTAGAAATTTCTGCCTGCACGAT
ACACGAGCCGCGCCGCTCCTTCTATTGAAAAATGTATTTCACGGAAATGT
CGTCCTAGGTGTTCATCCATCCATCTCCTTTCCACTGCATATACACATGC
AACCCGTAAACCTCTCTGCCCAGGGCCGTGAGCTACCAAATGACCGGGAA
CTTCCTGGCAGCATGCAACGAGCACGAGGCCGCGGCGAAACTTGCCGAAC
AACGCCAGGCCCTGCCGCTTGCACCCGCTCTTGCTTTGGGCATGGAAACC
AATTTCGGCATAAGGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14416:257..1424+

>mRNA_E-fasciculatus_F_contig14416.3212.1 ID=mRNA_E-fasciculatus_F_contig14416.3212.1|Name=mRNA_E-fasciculatus_F_contig14416.3212.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1242bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14416:257..1424+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAGAGGATCAAGACTTCGAGGAAGACGATGGTGATGAGCTATCGGC
GATGGCTTGGGAATCGGCGATCCGAGGAAAGAGCGGCCGAGAGATCGCAC
AACTCCACGAGAGCTGGGCGGCAGCTTTTCTCTCGCGCGGGTCCTTCAAC
AAAGCCCAGATGCAAGAGGATCAAGACTTCGAGGAAGACGATGGTGATGA
GCTATCGGCGATGGCTTGGGAATCGGCGATCCGAGGAAAGAGCGGCCGAG
AGATCGCACAACTCCACGAGAGCTGGGCGGCAGCTTTTCTCTCGCGCGGG
TCCTTCAACAAAGCCCAGGAACACCTCGACCACGCCCTCGAAGCATGGAC
CGGCTACGACGAGCCCGGCCTCCAGGCCCGCGCATGGTGCCTGAAGGCGT
CGTGCAGCGGCGAGGCCGGCGACTTCTCTGCCGCTGCGGCGAGCTCAAAA
ATTGCCCTGAAGATCGCGGAGGGCACGGACGACGCCCCTTTGGTGTTATC
CGTAATGGCCAACCGCGCCATCTGCGAGATCCACCTCGGGGACTGCAAGG
CCGCCGCCACTCGCTCTCGGCGCGCCTTCATCAGGGCCGAAGCGGAGGGC
AGGCCTGAGGCAGTCCTTTTGGCGCACGGTGTCCGGAACACCTCGACCAC
GCCCTCGAAGCATGGACCGGCTACGACGAGCCCGGCCTCCAGGCCCGCGC
ATGGTGCCTGAAGGCGTCGTGCAGCGGCGAGGCCGGCGACTTCTCTGCCG
CTGCGGCGAGCTCAAAAATTGCCCTGAAGATCGCGGAGGGCACGGACGAC
GCCCCTTTGGTGTTATCCGTAATGGCCAACCGCGCCATCTGCGAGATCCA
CCTCGGGGACTGCAAGGCCGCCGCCACTCGCTCTCGGCGCGCCTTCATCA
GGGCCGAAGCGGAGGGCAGGCCTGAGGCAGTCCTTTTGGCGCACGGTGTC
CGGGCCGTGAGCTACCAAATGACCGGGAACTTCCTGGCAGCATGCAACGA
GCACGAGGCCGCGGCGAAACTTGCCGAACAACGCCAGGCCCTGCCGCTTG
CACCCGCTCTTGCTTTGGGCATGGAAACCAATTTCGGCATAAGGTAAGGC
CGTGAGCTACCAAATGACCGGGAACTTCCTGGCAGCATGCAACGAGCACG
AGGCCGCGGCGAAACTTGCCGAACAACGCCAGGCCCTGCCGCTTGCACCC
GCTCTTGCTTTGGGCATGGAAACCAATTTCGGCATAAGGTAA
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