mRNA_E-fasciculatus_F_contig14416.3213.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14416.3213.1
Unique NamemRNA_E-fasciculatus_F_contig14416.3213.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14416.3213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14416contigE-fasciculatus_F_contig14416:2122..2934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_002910.1
Exons2
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927929.9022918-CDS-E-fasciculatus_F_contig14416:2121..23201622927929.9022918-CDS-E-fasciculatus_F_contig14416:2121..2320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14416 2122..2320 +
1695995755.2870324-CDS-E-fasciculatus_F_contig14416:2121..23201695995755.2870324-CDS-E-fasciculatus_F_contig14416:2121..2320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14416 2122..2320 +
1622927929.9137068-CDS-E-fasciculatus_F_contig14416:2866..29341622927929.9137068-CDS-E-fasciculatus_F_contig14416:2866..2934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14416 2867..2934 +
1695995755.2951357-CDS-E-fasciculatus_F_contig14416:2866..29341695995755.2951357-CDS-E-fasciculatus_F_contig14416:2866..2934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14416 2867..2934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14416.3213.1prot_E-fasciculatus_F_contig14416.3213.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14416 2122..2934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14416.3213.1

>prot_E-fasciculatus_F_contig14416.3213.1 ID=prot_E-fasciculatus_F_contig14416.3213.1|Name=mRNA_E-fasciculatus_F_contig14416.3213.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
DEEDDDDDDDDDEDGGGGRPRRPPLTLARCLFHAGEARRQNGEFRAANAF
LEEAVAVAAAAMESSAAAEASGVDKGDRSKWTALAMEVA
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mRNA from alignment at E-fasciculatus_F_contig14416:2122..2934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14416.3213.1 ID=mRNA_E-fasciculatus_F_contig14416.3213.1|Name=mRNA_E-fasciculatus_F_contig14416.3213.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=813bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14416:2122..2934+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGAGGAGGACGATGACGACGACGACGACGACGACGAAGATGGTGGTGG
CGGGAGACCACGCCGGCCGCCTCTGACCCTGGCTCGCTGCCTGTTTCACG
CCGGGGAGGCTAGGCGGCAGAACGGAGAGTTTCGTGCCGCCAATGCTTTC
CTAGAGGAGGCGGTCGCTGTTGCTGCTGCGGCCATGGAATCCTCCGCGGG
TGAGCCCCTTCGCACCGGCCTGCTGGCATGCTTGCCATGCACGGTAGCTT
TTCGACCGTGTTTCTGTCACGAGCGGGAGTACGGTTGACTGCAGGGGTGC
TGGACACCAAGTATCGGTGCATGAGCGGTGTTGGTGCAAGAACGAGCACG
GACATTTGAGCACGCAGGCTCCATAGCAGTATCACGGTTTTGGCGGGGGG
TGGGGGATGAATGAGGTTCCACATGCGGTGCTTTTCTTTGGGGCTGTTTG
GGTTGAGGTTGGTGGTGCCAAGGACAAGCGGCGCCGCTGCAGAGCTCATA
AGATTATTTTTGTACACGTTCACCTAGCCTTTCTGTTCTGCTCTCGAAAG
CAATGCCCAAACAATGATACCCAAGAAAGATCTCGATCACCTTCCACTGG
AACAACAGGGCTGTCTCCTGTAGCAACAACAATCAGTGCAATCTACACCC
CTTGCTTTGCACACACTCTGTGGTTCCTCTCGCGCGCGCACGATTGCCCT
TGTCGGTCTTGTCCTTGTCCTCTCGCCGGTCTTCTCCGAAAAAAGCCGCC
GAAGCCTCCGGGGTCGACAAGGGGGATCGGTCGAAGTGGACCGCGCTCGC
CATGGAAGTGGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14416:2122..2934+

>mRNA_E-fasciculatus_F_contig14416.3213.1 ID=mRNA_E-fasciculatus_F_contig14416.3213.1|Name=mRNA_E-fasciculatus_F_contig14416.3213.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14416:2122..2934+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGAGGAGGACGATGACGACGACGACGACGACGACGAAGATGGTGGTGG
CGGGAGACCACGCCGGCCGCCTCTGACCCTGGCTCGCTGCCTGTTTCACG
CCGGGGAGGCTAGGCGGCAGAACGGAGAGTTTCGTGCCGCCAATGCTTTC
CTAGAGGAGGCGGTCGCTGTTGCTGCTGCGGCCATGGAATCCTCCGCGGG
ATGAGGAGGACGATGACGACGACGACGACGACGACGAAGATGGTGGTGGC
GGGAGACCACGCCGGCCGCCTCTGACCCTGGCTCGCTGCCTGTTTCACGC
CGGGGAGGCTAGGCGGCAGAACGGAGAGTTTCGTGCCGCCAATGCTTTCC
TAGAGGAGGCGGTCGCTGTTGCTGCTGCGGCCATGGAATCCTCCGCGGCC
GCCGAAGCCTCCGGGGTCGACAAGGGGGATCGGTCGAAGTGGACCGCGCT
CGCCATGGAAGTGGCCCCGCCGAAGCCTCCGGGGTCGACAAGGGGGATCG
GTCGAAGTGGACCGCGCTCGCCATGGAAGTGGCC
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