mRNA_E-fasciculatus_F_contig14414.3211.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.980e-58 Identity = 114/181 (62.98%), Postives = 134/181 (74.03%), Query Frame = 2
Query: 8 GADVTPGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLQAIQRGCLDGSGGTEEKVVILLLEILPEADIRPAATSRTPKEVMVRSPRVVAPAHDGGLPSMADFAAIKAALEELQADKDKQQEELK---------------------AMRSANEDLQRKMSAMEKRVSEGDCEPGD 487
GAD+TPGDMSEEDVFEYLLEEVASY+RNDHGG RLGKKHLRKLL+AIQRG LDGS GTE+K+ +L+L+ILPEAD AAT TPKEV+VRSP VV PAHDGGLPS A+F A++AALE L+ D++ QQ A+ S N+ L+ K++AMEKRV EGDCEP D
Sbjct: 622 GADMTPGDMSEEDVFEYLLEEVASYKRNDHGGVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRAEFTAMQAALEALKFDRETQQXXXXXXXXXXXXXXXXXXXXXXXXXAVESRNKQLREKVAAMEKRVPEGDCEPCD 802
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI) HSP 1 Score: 193 bits (490), Expect = 1.180e-54 Identity = 101/132 (76.52%), Postives = 112/132 (84.85%), Query Frame = 2
Query: 2 GRGADVTPGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLQAIQRGCLDGSGGTEEKVVILLLEILPEADIRPAATSRTPKEVMVRSPRVVAPAHDGGLPSMADFAAIKAALEELQADKDKQQEEL 397
GRGAD+ PGDMSEEDVF+YLLEEV +YERNDHGGKRLGKKHLRKLL+AIQ GCLDGS GT +K+ ILLLEILPEAD +PAAT TPKEVMVRSP A AHD GLPS A+FAAI+A L L++ KDKQQ EL
Sbjct: 378 GRGADMMPGDMSEEDVFKYLLEEVTAYERNDHGGKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAEL 509
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 188 bits (477), Expect = 5.620e-52 Identity = 99/132 (75.00%), Postives = 111/132 (84.09%), Query Frame = 2
Query: 2 GRGADVTPGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLQAIQRGCLDGSGGTEEKVVILLLEILPEADIRPAATSRTPKEVMVRSPRVVAPAHDGGLPSMADFAAIKAALEELQADKDKQQEEL 397
GRGAD+ PGDMSEEDVF+YLLEEV + ERNDHGGKRLGK+HLRKLL+AIQ GCLDGS GT +K+ ILLLEILPEAD +PAAT TPKEVMVRSP A AHD GLPS A+FAAI+A L L++ KDKQQ EL
Sbjct: 573 GRGADMMPGDMSEEDVFKYLLEEVTADERNDHGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAEL 704
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 182 bits (461), Expect = 1.710e-49 Identity = 94/132 (71.21%), Postives = 110/132 (83.33%), Query Frame = 2
Query: 2 GRGADVTPGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLQAIQRGCLDGSGGTEEKVVILLLEILPEADIRPAATSRTPKEVMVRSPRVVAPAHDGGLPSMADFAAIKAALEELQADKDKQQEEL 397
GR AD++P DM E+DVFEYLLEEVA YER+DHGGKRLGKKHLRKLL+AIQRGCLDGS G ++K+ LLLEILP ADIR + TS TPK+V+VRSP +AP HDG LPSMAD AA++AA+E L KDKQ+ EL
Sbjct: 653 GRDADISPDDMIEDDVFEYLLEEVARYERSDHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSMADIAALQAAVEVLTLAKDKQRAEL 784
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 172 bits (437), Expect = 2.840e-46 Identity = 89/132 (67.42%), Postives = 110/132 (83.33%), Query Frame = 2
Query: 2 GRGADVTPGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLQAIQRGCLDGSGGTEEKVVILLLEILPEADIRPAATSRTPKEVMVRSPRVVAPAHDGGLPSMADFAAIKAALEELQADKDKQQEEL 397
GR AD+ P + E+DVFE+LLEEVA YER+DHGGKRLGKKHLRKLL+AIQRGCLDGS G ++K+ +LLLEILPEADIR + TS +PKEV+V+SP +AP H+G LPSMAD AA++AA+E L + KD Q+ EL
Sbjct: 693 GRDADILPDIIIEDDVFEHLLEEVARYERSDHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMELLLLEILPEADIRTSETSISPKEVIVQSPPALAPTHNGTLPSMADIAALQAAVEALTSAKDMQRAEL 824
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI) HSP 1 Score: 154 bits (388), Expect = 6.390e-40 Identity = 85/134 (63.43%), Postives = 101/134 (75.37%), Query Frame = 2
Query: 2 GRGADVTPGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLQAIQRGCLDGSGGTEEK----------VVILLLEILPEADIRPAATSRTPKEVMVRSPRVVAPAHDGGLPSMADFAAIKAALEELQAD 373
G+G + P MSE DVFEY+L+EVAS NDHGGKRLGKKHLRKLL+A+QRGCLDG TE+K + +LLLEILPEADIR AATS KEV+V+S VV AHD G PSMADFAA++AA+EEL++D
Sbjct: 538 GQGPNSLPAIMSEGDVFEYVLKEVASCGHNDHGGKRLGKKHLRKLLKAVQRGCLDGLSCTEQKARTRMSSRQQMAVLLLEILPEADIRHAATSSLLKEVIVKSLPVVGAAHDSGSPSMADFAALQAAVEELKSD 671
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Match: D7G8A7_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI) HSP 1 Score: 100 bits (249), Expect = 4.200e-21 Identity = 63/163 (38.65%), Postives = 88/163 (53.99%), Query Frame = 2
Query: 23 PGDMSEEDVFEYLLEEVASYERNDHG--------GKRLGKKHLRKLLQAIQRGCLDGSGGTEEKVVILLLEILPEADIRPAATSRTPKEVMVRSPRVVAPAHDGGLPSMADFAAIKAALEELQADKDKQQEELKAMRSANEDLQRKMSAMEKRVSEGDCEPGD 487
P S+ED E+ EE AS N+ G G+RLGK+H+R +L A++RGCL G+ EEKV LL ++PEA +P + S + + P AP+HDGGL A+FAA++A LE L+ + K L RK+S MEK + + EP D
Sbjct: 474 PDCASDEDFMEWFAEEAASCVPNNTGKSTPEEKTGRRLGKRHIRMILAAVERGCLQGTHAIEEKVEQLLKVVVPEAGAKPVSNSNAQERSFEQHPAAPAPSHDGGLDLHAEFAAMQAKLEALEIENGK--------------LTRKVSTMEKSIPKPQGEPSD 622
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Match: D7FHJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ4_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 2.400e-16 Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 2
Query: 101 GKRLGKKHLRKLLQAIQRGCLDGSGGTEEKVVILLLEILPEADIRPAATSRTPKEVMVRSPRVVAPAHDGGLPSMADFAAIKAALEELQA 370
GKRLG++HLR LL A+ RGCL+G+ EKV L+ ILPEA+I P S + +R P V+APAHD GL A A + AALE QA
Sbjct: 29 GKRLGRRHLRMLLTAVGRGCLEGTNNPREKVDALVQVILPEANIHPTTISSAGEHPRMR-PTVLAPAHDAGLDQAAQLATVMAALEAQQA 117
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Match: A0A6H5JVV5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV5_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.250e-15 Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 2
Query: 101 GKRLGKKHLRKLLQAIQRGCLDGSGGTEEKVVILLLEILPEADIRPAATSRTPKEVMVRSPRVVAPAHDGGLPSMADFAAIKAALEELQADKDKQQEELKAMRSANEDLQRKMSAMEKRVSEGDCEPGD 487
G+RL K+H+R +L A++RGCL + EEKV L ++PEA ++P + S + + P AP+HDGGL A+FAA++A LE L+ + K L RK+S MEK + + EP D
Sbjct: 510 GRRLAKRHIRMILAAVERGCLQETHAIEEKVERLRRVVVPEAGVKPVSNSNAQERSFEQRPAAPAPSHDGGLDLHAEFAAMQAKLEALEIENGK--------------LTRKVSTMEKNIPKPQGEPSD 624
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Match: A0A6H5JDK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK8_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 5.160e-5 Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 2
Query: 242 ATSRTPKEVMVRSPRVVAPAHDGGLPSMADFAAIKAALEELQADKDKQQ 388
ATS TPKE++VRSP VVA AHD GLPS AA++A+ E L+ D++ QQ
Sbjct: 289 ATSNTPKEMIVRSPVVVATAHDNGLPSREQIAAMQASSEALKFDRETQQ 337 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14414.3211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14414.3211.1 >prot_E-fasciculatus_F_contig14414.3211.1 ID=prot_E-fasciculatus_F_contig14414.3211.1|Name=mRNA_E-fasciculatus_F_contig14414.3211.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=187bp MSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLQAIQRGCLDGSGGTback to top mRNA from alignment at E-fasciculatus_F_contig14414:12..1501+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14414.3211.1 ID=mRNA_E-fasciculatus_F_contig14414.3211.1|Name=mRNA_E-fasciculatus_F_contig14414.3211.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1490bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14414:12..1501+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14414:12..1501+ >mRNA_E-fasciculatus_F_contig14414.3211.1 ID=mRNA_E-fasciculatus_F_contig14414.3211.1|Name=mRNA_E-fasciculatus_F_contig14414.3211.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1122bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14414:12..1501+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |