mRNA_E-fasciculatus_F_contig144.3201.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig144.3201.1
Unique NamemRNA_E-fasciculatus_F_contig144.3201.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig144.3201.1 vs. uniprot
Match: D7G386_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G386_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.200e-60
Identity = 122/188 (64.89%), Postives = 126/188 (67.02%), Query Frame = 3 
Query:   57 MGRPDSTSDGAVRSATTAPPSPSSSSAWSTAASSAVVPAFAGVREQEPSSTMSPARRRGVGGEGAGSAPSSAAPVAEARAASHKIVRLAPRVYQVPTLRYCCVQVLAEHADKIVDLRGVGQDTARQLLEEIMGRQKLTYPLAKVFMNCGDDELSRQARSIVAVQLAIASLNLWDAIPAGRQGRHSRHL 620
            MG PDSTSDGA R A+TAPPS                                           AGS PS AAPVAE R ASH+I++LAPRVYQ PTLRYCCVQVLAEHADKIVDLRGVGQDTARQLLEEIMGRQKLTYPLAKVFMNCGDDELS           AIASLNLWDAIPAGRQGRHSRHL
Sbjct:    1 MGYPDSTSDGAGRPASTAPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSIPSPAAPVAEVRTASHRIMKLAPRVYQAPTLRYCCVQVLAEHADKIVDLRGVGQDTARQLLEEIMGRQKLTYPLAKVFMNCGDDELSS----------AIASLNLWDAIPAGRQGRHSRHL 178
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BLAST of mRNA_E-fasciculatus_F_contig144.3201.1 vs. uniprot
Match: A0A836C951_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C951_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.120e-13
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 3 
Query:  291 RAASHKIVRLAPRVYQVPTLRYCCVQVLAEHADKIVDLRGVGQDTARQLLEEIMGRQKLTYPLAKVFMNCGDDELSRQARSIVAVQLAIASLNLWDAIPAGR 596
            R  +H+ + +  +   VP+L    +  LA+H + I D+  + +  A QLL EIM RQKLT+ LAKVFMNCG D++ R          A+ SLNL++A+P G+
Sbjct:   40 RKPTHRTITVQMKCAAVPSLTDMAISKLADHCESITDISCLPEMLAVQLLSEIMRRQKLTFALAKVFMNCGHDDICR----------AMESLNLFNAVPVGK 131
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BLAST of mRNA_E-fasciculatus_F_contig144.3201.1 vs. uniprot
Match: A0A7S2D6D4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6D4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.650e-6
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:  285 EARAASHKIVRLAPRVYQVPTLRYCCVQVLAEHADKIVDLRGVGQDTARQLLEEIMGRQKLTYPLAKVFM 494
            E  A  H   ++A + Y+VP+L   C++ LA+++D IVDL  + + +   LL +IM RQKLT PLA+VF+
Sbjct:    1 EPYAPRHTTTKVAVK-YEVPSLSGLCIKFLADNSDSIVDLSNIDERSGVMLLMQIMRRQKLTVPLARVFI 69
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig144.3201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G386_ECTSI1.200e-6064.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C951_9STRA6.120e-1340.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2D6D4_9STRA1.650e-642.86Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig144contigE-fasciculatus_F_contig144:24742..28209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_004930.1
Exons4
Model size1438
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig144.3201.1prot_E-fasciculatus_F_contig144.3201.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig144 25557..28153 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927928.4594517-UTR-E-fasciculatus_F_contig144:24741..255561622927928.4594517-UTR-E-fasciculatus_F_contig144:24741..25556Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig144 24742..25556 -
1695995754.6273546-UTR-E-fasciculatus_F_contig144:24741..255561695995754.6273546-UTR-E-fasciculatus_F_contig144:24741..25556Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig144 24742..25556 -
1622927928.5364678-UTR-E-fasciculatus_F_contig144:28153..282091622927928.5364678-UTR-E-fasciculatus_F_contig144:28153..28209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig144 28154..28209 -
1695995754.6875374-UTR-E-fasciculatus_F_contig144:28153..282091695995754.6875374-UTR-E-fasciculatus_F_contig144:28153..28209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig144 28154..28209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927928.473002-CDS-E-fasciculatus_F_contig144:25556..256291622927928.473002-CDS-E-fasciculatus_F_contig144:25556..25629Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 25557..25629 -
1695995754.6362624-CDS-E-fasciculatus_F_contig144:25556..256291695995754.6362624-CDS-E-fasciculatus_F_contig144:25556..25629Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 25557..25629 -
1622927928.484058-CDS-E-fasciculatus_F_contig144:26357..265461622927928.484058-CDS-E-fasciculatus_F_contig144:26357..26546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 26358..26546 -
1695995754.6449072-CDS-E-fasciculatus_F_contig144:26357..265461695995754.6449072-CDS-E-fasciculatus_F_contig144:26357..26546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 26358..26546 -
1622927928.4992776-CDS-E-fasciculatus_F_contig144:26889..271511622927928.4992776-CDS-E-fasciculatus_F_contig144:26889..27151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 26890..27151 -
1695995754.654248-CDS-E-fasciculatus_F_contig144:26889..271511695995754.654248-CDS-E-fasciculatus_F_contig144:26889..27151Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 26890..27151 -
1622927928.516164-CDS-E-fasciculatus_F_contig144:28110..281531622927928.516164-CDS-E-fasciculatus_F_contig144:28110..28153Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 28111..28153 -
1695995754.6724606-CDS-E-fasciculatus_F_contig144:28110..281531695995754.6724606-CDS-E-fasciculatus_F_contig144:28110..28153Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 28111..28153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig144.3201.1

>prot_E-fasciculatus_F_contig144.3201.1 ID=prot_E-fasciculatus_F_contig144.3201.1|Name=mRNA_E-fasciculatus_F_contig144.3201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=189bp
MGRPDSTSDGAVRSATTAPPSPSSSSAWSTAASSAVVPAFAGVREQEPSS
TMSPARRRGVGGEGAGSAPSSAAPVAEARAASHKIVRLAPRVYQVPTLRY
CCVQVLAEHADKIVDLRGVGQDTARQLLEEIMGRQKLTYPLAKVFMNCGD
DELSRQARSIVAVQLAIASLNLWDAIPAGRQGRHSRHL*
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mRNA from alignment at E-fasciculatus_F_contig144:24742..28209-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig144.3201.1 ID=mRNA_E-fasciculatus_F_contig144.3201.1|Name=mRNA_E-fasciculatus_F_contig144.3201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig144:24742..28209- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACAACACCCTCTCTGCCCGGACAGAGCGCAGAGGATACGACGGTGCCCA
AAGGGGATGGGCCGTCCTGATTCTACGTCAGATGGTGCCGTAAGATCTGG
TGAGGTGTCTGTTTTTTTGTGTCAAACTACCAGGCATTTGCTGTGTTCTC
TCCGCATGTGTCTCCCTCCTGCAGCTCCTACTCTGCACTCGTACACTGCT
GTCTGTATGCATGTATCATACTCCAGACAGGAGCAGTGGTTTGCTGGCAC
GGGTACCGCTACCACCCCGAGGAGCACACCTTTTATGAAGTCACTTGTCA
TCGGCGGTGTGTGTTAATATGCATGGTTGGAGCGTCCGTATGTGGGGCAC
TGCTGCTGTAAGTGACTTCAACTTCTACAGCACCGACTGGGTGCAGACCT
CCGAAGCAGAGGATTGAGGATTTACTACTGCTGTACATGCATACAAACGC
TGCAGGTGCCCGCCGCTGCGCACCCGTAGCAAGCGGTAGGGACGTCTCCC
CACTCACCTCATTTCGTGCCGCCACACTCATTGCCAGGTAGTGTTCAGCT
TTGTGAGCGCGATGCCCCATGCATCGTAGATATACATCAAAGTCTGCGTC
TTCGCCGACGCGGGTTCGTCTCGGCTTCGGGCGTTAACGTTTCCCCCCTA
TGCATATGCAATTATGCATACAATATGTAGCTGCATTTCTACACCGTTCC
CGCTTTACCGATCCATGTCGCTTATACCCATACCCCTCTGCCTGCTGTTT
TTGAATTAGGTCAGCGGCGAACAACAATAAGGTGTTCCTCTTCTTGGTAC
CGAGTAGTCTACTGCTCTATTCCTGTCGTAATTTTGTACCAACACCGGCA
TGCGGAATTTCCTCGTTTCTGTTACTCGTGCCTTCCTCGATAACCACGCG
CATCACGCTTCTGCTCGGATGGTGGGGTTTGAGGTTCCTTCCTCCTTAAC
GACACGCATCCATTACGCCTTCTTTTGTTCTTTCGTTACGCCTTCTTTTG
TTCTTTCGTTACGCCTTCTTTTGTTCTTTCGTTACGCCTTCTTTTGTTGT
TTCGTCAGCAACAACGGCACCACCTTCCCCGTCGTCTTCGTCAGCTTGGT
CGACTGCGGCAAGCAGCGCGGTAGTGCCGGCTTTCGCTGGGGTGAGAGAA
CAAGAGCCGTCCTCTACAATGTCGCCGGCGAGGCGACGAGGGGTCGGTGG
GGAAGGGGCTGGTTCGGCTCCGTCCTCTGCTGCTCCGGTAGCGGAAGCAC
GAGCGGCGAGCCACAAGATCGTGAGGCTTGCTCCGCGAGTCTACCAGGTG
CCAACTTTGAGATATTGCTGGTGAGACCGACTTGTTGTGTTGTTCGTGTT
GTGATGGTGTGGTTGGCGCGTTTCTGTGGGCGATCGATCGCGATTGGACG
ACGTTCATTGTTGTCGACTCACGTTGGCCGGATTCGATTCAATACAAACA
TGGTACCCTTGGCTCCCCGAGAGCCTGGCATACCGCACCCTCTACGTTCG
ACCCACCCTGTGTCTTCCGCCCCCTCCTCTCGCAGCTCGCTTCCACCTTC
TTAGTGCTCAAGCCTTTTCTGCGCCTTCGTGTGTCTCTGCCGCTACGTTT
TCCTCTTGTGTGGACCTCTGTTCCCGCTCCTGTCTGACCCTGTGTCTATC
CCTCTTACTGCAGCGTGCAAGTCCTGGCGGAGCACGCAGATAAAATCGTG
GACCTCAGGGGGGTGGGGCAGGACACAGCTAGGCAGCTCTTGGAGGAGAT
CATGGGGAGGCAGAAGCTAACGTACCCGCTCGCCAAGGTGTTCATGAACT
GCGGTGACGACGAACTTAGCAGGCAAGCTCGATCGATCGTTGCTGTCCAG
CTGTCGCTTGGGTTTCGCTTTCGTATGCATTTGTGGTCGTTGTTGTTGTT
GTCTTCGCATTAATAAAACCGTTCCGGTCTCCGCCTAGTACCTTCCAGTG
TCCGTACTGATCCAACTGTTGTTGTTGTCTTTACGTTAAAATAAAGGTTC
TGCTCTCCGCTCAGTACCTTCTAATGTCCGTACTGGTCCAGCTGTTGTTG
TCGTCTTCGCATTAAATAAACCGTTCCGGTCTCCGCTCAGTACCTTCTAA
ATGTCCGTACTGGTCCAACTGTGTGACGATGTATTTTTCGTGTATGCGTT
CGTCTCATCAGTTCTGGCGCCAGCCTTCACACGCTGAGGTGTACATATAT
GTTTGACGTATCAGCGGGGGTCGCACTGGAAGAAGGTCATGCCTAGAAGA
TTGGGCAGTTCAGCATATTTTTGGAGACGTCCACCCGACGTCCACTTTGG
TGCTTCACTGCCGCCGCACGGCTGTCAGCACACCCTCGAAAAATTGGAGA
TACGTTTTATCAGCCCTTACAAACTATTATAGGGTTGGGTTGTGGCGTGC
CCCTCAGGTTTTCTGGCAGCTCAACGCAATAAGTTGTTCCTAGCAGTTCA
TTTTTTGCGCAAATCGCTGATCACGAGCTTCCTTCGACCCAACGCTGTCC
TCATTTGGTACCCTCTGGCCCTCCGTGTTGCTGTCCCAATGGCTTTCATG
CTCGGTGTCCTCTGATCCCTGTGTTGGCAGTGCGATCGCTTCGTTAAACC
TGTGGGATGCGATACCAGCCGGCCGGCAAGGAAGACATAGCAGGCATCTG
TAGGAAAGCTGGGTCTGCTAAAGGCCAAGGCCGCAAAAAATTGATCGCTG
GTCACGAGAGGCATATTTCTTGTCCGGTCCGGAGCATTTCGGGATCTTGG
TTTCGTGGAGACAAGCGCAGTTTGCCGTACGCAGTGTCGTAAATTTGTAC
ACTATGTATGTAGTTCTAGTTCTAGGGTTTAAGAGAATACATCCGAGGGG
AACCAGCCCAAGCTTGACGGGTCTGACCAGAAGGGGCTTCGCAGATCGCT
GTGCGCCAGGCCGTGACGGTTGCTGTGTTTGTTGCACTTGTTGGGTGGCC
GCGGCGAAATTACCCCTATGTCGCCGCGACCTGGAGAGCTTAGCCTAGCT
GTTCGTTTTGTCCCGTGCGACGATGAGGGGGCGAAGTTTGTGGAAACCTG
CTTGTATCTTACCGAACGCGCTTGGCCTTGTACAAACCCCTCCAGCGACG
GCGGTAGGTACGAAAGGAGGGGGGACATCCCGTCTTTGTGACATTGAATG
CATGCTTCGGTAGGGTATTATAGTGTTTCCCTACAACGTACATGCGCAAA
TGGTTTGGGCGACTTGTCTCTCGTCCCGTTGTTGAAGAGGCGGTCGTCAA
GGTCAAGGTTTACGCAGCACCGAACCGAATGCCCTGGGTGGGGGAGAGCA
CACCCGCAACTGCTGTATCGTTCTTCGTCACGCGCCGCAAGAGCTAGCGA
GCGGTCCTCGTCAGCTCATTCTTGGCAACCTCTCAACGCTGTACGAAAAC
GGGAACTATTAATAGATGTTCAGGTTAACGCTGCACTATCCATCGAAATG
TTGTGTGAAGGATGTGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig144:24742..28209-

>mRNA_E-fasciculatus_F_contig144.3201.1 ID=mRNA_E-fasciculatus_F_contig144.3201.1|Name=mRNA_E-fasciculatus_F_contig144.3201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig144:24742..28209- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCCGTCCTGATTCTACGTCAGATGGTGCCGTAAGATCTGATGGGCC
GTCCTGATTCTACGTCAGATGGTGCCGTAAGATCTGCAACAACGGCACCA
CCTTCCCCGTCGTCTTCGTCAGCTTGGTCGACTGCGGCAAGCAGCGCGGT
AGTGCCGGCTTTCGCTGGGGTGAGAGAACAAGAGCCGTCCTCTACAATGT
CGCCGGCGAGGCGACGAGGGGTCGGTGGGGAAGGGGCTGGTTCGGCTCCG
TCCTCTGCTGCTCCGGTAGCGGAAGCACGAGCGGCGAGCCACAAGATCGT
GAGGCTTGCTCCGCGAGTCTACCAGGTGCCAACTTTGAGATATTGCTGCA
ACAACGGCACCACCTTCCCCGTCGTCTTCGTCAGCTTGGTCGACTGCGGC
AAGCAGCGCGGTAGTGCCGGCTTTCGCTGGGGTGAGAGAACAAGAGCCGT
CCTCTACAATGTCGCCGGCGAGGCGACGAGGGGTCGGTGGGGAAGGGGCT
GGTTCGGCTCCGTCCTCTGCTGCTCCGGTAGCGGAAGCACGAGCGGCGAG
CCACAAGATCGTGAGGCTTGCTCCGCGAGTCTACCAGGTGCCAACTTTGA
GATATTGCTGCGTGCAAGTCCTGGCGGAGCACGCAGATAAAATCGTGGAC
CTCAGGGGGGTGGGGCAGGACACAGCTAGGCAGCTCTTGGAGGAGATCAT
GGGGAGGCAGAAGCTAACGTACCCGCTCGCCAAGGTGTTCATGAACTGCG
GTGACGACGAACTTAGCAGGCAAGCTCGATCGATCGTTGCTGTCCAGCTC
GTGCAAGTCCTGGCGGAGCACGCAGATAAAATCGTGGACCTCAGGGGGGT
GGGGCAGGACACAGCTAGGCAGCTCTTGGAGGAGATCATGGGGAGGCAGA
AGCTAACGTACCCGCTCGCCAAGGTGTTCATGAACTGCGGTGACGACGAA
CTTAGCAGGCAAGCTCGATCGATCGTTGCTGTCCAGCTTGCGATCGCTTC
GTTAAACCTGTGGGATGCGATACCAGCCGGCCGGCAAGGAAGACATAGCA
GGCATCTGTAGTGCGATCGCTTCGTTAAACCTGTGGGATGCGATACCAGC
CGGCCGGCAAGGAAGACATAGCAGGCATCTGTAG
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