mRNA_E-fasciculatus_F_contig144.3199.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig144.3199.1
Unique NamemRNA_E-fasciculatus_F_contig144.3199.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Match: D7G389_ECTSI (Ras-related protein Rab n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G389_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.610e-41
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 MDQGGS-GGRQAAAAVTVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQASCGN 240
            MDQGGS GGRQAAAAVTVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQ   G+
Sbjct:   63 MDQGGSAGGRQAAAAVTVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQDRFGS 143
[Close]
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Match: A0A7S2V4T6_9STRA (Ras-related protein Rab n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4T6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.700e-26
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:   28 QAAAAVTVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQASCG 237
            +A  ++ +KVLVLGDPATGKTSIIKRYVH+FFS HHKTTVGVDFALKQL V  T V+LQLWDIAGQ   G
Sbjct:    3 EAGESLVLKVLVLGDPATGKTSIIKRYVHNFFSTHHKTTVGVDFALKQLHVRGTDVRLQLWDIAGQDRFG 72
[Close]
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Match: A0A7S2APD4_9STRA (Ras-related protein Rab n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APD4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.420e-26
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:   49 VKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQASCG 237
            +KVLVLGDPATGKTSIIKRYVH+FFS HH+TTVGVDFALKQL V +T V+LQLWDIAGQ   G
Sbjct:   28 LKVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLQVYNTVVRLQLWDIAGQDRFG 90
[Close]
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Match: A0A6V1S8I5_HETAK (Ras-related protein Rab n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S8I5_HETAK)

HSP 1 Score: 103 bits (257), Expect = 7.140e-26
Identity = 52/64 (81.25%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:   46 TVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQASCG 237
            T KVLVLGDPATGKTSIIKRYVH+FFS HHKTTVGVDFALK L V  T VK+QLWDIAGQ   G
Sbjct:    9 TWKVLVLGDPATGKTSIIKRYVHNFFSDHHKTTVGVDFALKALNVNGTEVKMQLWDIAGQDRFG 72
[Close]
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Match: A0A7S2S186_9STRA (Ras-related protein Rab n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S186_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.400e-25
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:   49 VKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQASCG 237
            +KVLVLGDPATGKTSIIKRYVH+FFS HH+TTVGVDFALKQL V +  V+LQLWDIAGQ   G
Sbjct:    9 LKVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLTVRNQLVRLQLWDIAGQDRFG 71
[Close]
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Match: F0YEW4_AURAN (Ras-related protein Rab (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEW4_AURAN)

HSP 1 Score: 100 bits (250), Expect = 3.860e-25
Identity = 54/81 (66.67%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   52 KVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVG-------------------DTTVKLQLWDIAGQASCG 237
            KVLVLGDPATGKTSIIKRYVH+FFS HH+TTVGVDFALKQL VG                   DTTV+LQLWDIAGQ   G
Sbjct:    1 KVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLTVGRRAGAARVPPRVATARDRRDTTVRLQLWDIAGQDRFG 81
[Close]
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Match: A0A397BPL7_9STRA (Ras-related protein Rab n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BPL7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.130e-24
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   16 SGGR-QAAAAVTVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQ 225
            +GGR +AA    VKVLVLGD ATGKTSIIKRYVH+ FS HHKTT+GVDFALK + V +TT++LQLWDIAGQ
Sbjct:    8 NGGRVEAAQDAVVKVLVLGDAATGKTSIIKRYVHNVFSEHHKTTIGVDFALKPVTVQNTTLRLQLWDIAGQ 78
[Close]
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Match: A0A024TU36_9STRA (Ras-related protein Rab n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024TU36_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.190e-24
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   16 SGGR-QAAAAVTVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQ 225
            +GGR +AA    VKVLVLGD ATGKTSIIKRYVH+ FS HHKTT+GVDFALK + V +TT++LQLWDIAGQ
Sbjct:    8 NGGRVEAAQDAVVKVLVLGDAATGKTSIIKRYVHNVFSEHHKTTIGVDFALKPVTVQNTTLRLQLWDIAGQ 78
[Close]
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Match: K3WGR3_GLOUD (Ras-related protein Rab n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WGR3_GLOUD)

HSP 1 Score: 99.8 bits (247), Expect = 2.790e-24
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   31 AAAAVTVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQ 225
            AA    +KVLVLGD ATGKTSIIKRYVHD FS HH+TT+GVDFALK + V  TTV+LQLWDIAGQ
Sbjct:    8 AAQDAVIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTVNGTTVRLQLWDIAGQ 72
[Close]
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Match: W2QJV6_PHYPN (Ras-related protein Rab n=3 Tax=Peronosporaceae TaxID=4777 RepID=W2QJV6_PHYPN)

HSP 1 Score: 99.8 bits (247), Expect = 2.910e-24
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   31 AAAAVTVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVGVDFALKQLVVGDTTVKLQLWDIAGQ 225
            AA    +KVLVLGD ATGKTSIIKRYVHD FS HH+TT+GVDFALK + V  TTV+LQLWDIAGQ
Sbjct:    8 AAQDAVIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTVSGTTVRLQLWDIAGQ 72
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig144.3199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G389_ECTSI1.610e-4193.83Ras-related protein Rab n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V4T6_9STRA1.700e-2675.71Ras-related protein Rab n=1 Tax=Fibrocapsa japonic... [more]
A0A7S2APD4_9STRA4.420e-2680.95Ras-related protein Rab n=1 Tax=Dictyocha speculum... [more]
A0A6V1S8I5_HETAK7.140e-2681.25Ras-related protein Rab n=1 Tax=Heterosigma akashi... [more]
A0A7S2S186_9STRA1.400e-2579.37Ras-related protein Rab n=1 Tax=Rhizochromulina ma... [more]
F0YEW4_AURAN3.860e-2566.67Ras-related protein Rab (Fragment) n=1 Tax=Aureoco... [more]
A0A397BPL7_9STRA1.130e-2473.24Ras-related protein Rab n=3 Tax=Aphanomyces astaci... [more]
A0A024TU36_9STRA1.190e-2473.24Ras-related protein Rab n=6 Tax=Aphanomyces TaxID=... [more]
K3WGR3_GLOUD2.790e-2475.38Ras-related protein Rab n=2 Tax=Pythiaceae TaxID=4... [more]
W2QJV6_PHYPN2.910e-2475.38Ras-related protein Rab n=3 Tax=Peronosporaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig144contigE-fasciculatus_F_contig144:2847..3722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue5.9e-33
Seed eggNOG ortholog2880.D7G389
Preferred nameRAB32
KEGG koko:K07918,ko:K07923,ko:K07976
GOsGO:0000166,GO:0000323,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005776,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006856,GO:0006873,GO:0006885,GO:0006996,GO:0007005,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008055,GO:0008057,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009894,GO:0009987,GO:0010256,GO:0010506,GO:0010876,GO:0010883,GO:0010941,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019748,GO:0019867,GO:0019882,GO:0019915,GO:0021700,GO:0022607,GO:0023052,GO:0030003,GO:0030004,GO:0030139,GO:0030154,GO:0030641,GO:0030659,GO:0030742,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0031984,GO:0032438,GO:0032482,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033036,GO:0033059,GO:0033060,GO:0033162,GO:0033363,GO:0034613,GO:0035556,GO:0035639,GO:0035646,GO:0035650,GO:0035651,GO:0036094,GO:0036211,GO:0036461,GO:0042440,GO:0042441,GO:0042470,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043412,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043687,GO:0044085,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044840,GO:0044841,GO:0044877,GO:0045009,GO:0045184,GO:0045335,GO:0045851,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0048066,GO:0048069,GO:0048072,GO:0048753,GO:0048757,GO:0048770,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0050931,GO:0051179,GO:0051234,GO:0051235,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0060155,GO:0065007,GO:0065008,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0080171,GO:0090382,GO:0090383,GO:0090741,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098805,GO:1901214,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1903232,GO:1905952
EggNOG free text desc.BLOC-2 complex binding
EggNOG OGsKOG4423@1,KOG4423@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927928.2125545-CDS-E-fasciculatus_F_contig144:2846..29851622927928.2125545-CDS-E-fasciculatus_F_contig144:2846..2985Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 2847..2985 -
1695995754.455205-CDS-E-fasciculatus_F_contig144:2846..29851695995754.455205-CDS-E-fasciculatus_F_contig144:2846..2985Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 2847..2985 -
1622927928.2235286-CDS-E-fasciculatus_F_contig144:3618..37221622927928.2235286-CDS-E-fasciculatus_F_contig144:3618..3722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 3619..3722 -
1695995754.467967-CDS-E-fasciculatus_F_contig144:3618..37221695995754.467967-CDS-E-fasciculatus_F_contig144:3618..3722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig144 3619..3722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig144.3199.1prot_E-fasciculatus_F_contig144.3199.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig144 2847..3722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig144.3199.1

>prot_E-fasciculatus_F_contig144.3199.1 ID=prot_E-fasciculatus_F_contig144.3199.1|Name=mRNA_E-fasciculatus_F_contig144.3199.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp
MDQGGSGGRQAAAAVTVKVLVLGDPATGKTSIIKRYVHDFFSGHHKTTVG
VDFALKQLVVGDTTVKLQLWDIAGQASCGN*
back to top

mRNA from alignment at E-fasciculatus_F_contig144:2847..3722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig144.3199.1 ID=mRNA_E-fasciculatus_F_contig144.3199.1|Name=mRNA_E-fasciculatus_F_contig144.3199.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig144:2847..3722- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATCAAGGGGGTTCCGGCGGACGCCAAGCGGCGGCAGCGGTAACCGT
CAAGGTGTTGGTTCTGGGTGACCCTGCCACAGGAAAAACGAGCATCATCA
AGAGGTCAGTTACTCGAAGGTCCGAAAGTCCTTTACTTCCTTCTCCTACG
GGTCAGAAGCACGTGGGTCTCTTTCGATACATATTTGTTTCTCCGCTTGA
GGGCAGGATCGATGTTCCGATGTTCCTGTAGGTTGTGAAGATTGAGGACA
TGGGGAGCCGGGGTTGCGGGCGCGCTATTGTTAACGCATCGTGGTGCCAT
ATGGGGGAGGCAAGATATCCCGTTGGGGCTAGAATGCCGCCGTACTTGTT
GGGTGAGAAAGTCGTGGTTGCCTTGTCTTGGGTATGATTCAGCGGGTGAG
ACCTGGGTTCGCGAGACCCGTGTATTTCTTGTTTTCGCAGCCTGCAAGTC
GAGTCTCTGCAACAGGTGTGCTGGTTTGCAACGGATACAGTGGTGTGCTT
CACCGACTGCTTTTTCCGTCGCCCACACTGCGGGCAAAATTGACCCCATC
GGTTCACTTACCGGTTCGACTAAAGGACACTTTTGGTCAAACGACCATCA
CCTACCGCCGGTGCTGCCGAACCCCATTCGCACGCCTCTTGTTGCTACGG
CTGCTGCTTGCCGAGACGTTGTTGCGCTGCCTACTTAATTGTGATGTTTT
TTTGTCATATATGTTTCTTGCTTGGAACCAACCGCAGATATGTGCACGAC
TTCTTTTCGGGTCACCACAAGACCACCGTAGGGGTGGACTTCGCCCTCAA
GCAGCTCGTGGTAGGGGACACCACGGTCAAGCTGCAGCTCTGGGACATCG
CGGGACAGGCGAGTTGCGGTAACTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig144:2847..3722-

>mRNA_E-fasciculatus_F_contig144.3199.1 ID=mRNA_E-fasciculatus_F_contig144.3199.1|Name=mRNA_E-fasciculatus_F_contig144.3199.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig144:2847..3722- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATCAAGGGGGTTCCGGCGGACGCCAAGCGGCGGCAGCGGTAACCGT
CAAGGTGTTGGTTCTGGGTGACCCTGCCACAGGAAAAACGAGCATCATCA
AGAGATGGATCAAGGGGGTTCCGGCGGACGCCAAGCGGCGGCAGCGGTAA
CCGTCAAGGTGTTGGTTCTGGGTGACCCTGCCACAGGAAAAACGAGCATC
ATCAAGAGATATGTGCACGACTTCTTTTCGGGTCACCACAAGACCACCGT
AGGGGTGGACTTCGCCCTCAAGCAGCTCGTGGTAGGGGACACCACGGTCA
AGCTGCAGCTCTGGGACATCGCGGGACAGGCGAGTTGCGGTAACTGAATA
TGTGCACGACTTCTTTTCGGGTCACCACAAGACCACCGTAGGGGTGGACT
TCGCCCTCAAGCAGCTCGTGGTAGGGGACACCACGGTCAAGCTGCAGCTC
TGGGACATCGCGGGACAGGCGAGTTGCGGTAACTGA
back to top