mRNA_E-fasciculatus_F_contig14398.3197.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14398.3197.1
Unique NamemRNA_E-fasciculatus_F_contig14398.3197.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14398.3197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14398contigE-fasciculatus_F_contig14398:1915..2389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927928.076559-UTR-E-fasciculatus_F_contig14398:1914..20051622927928.076559-UTR-E-fasciculatus_F_contig14398:1914..2005Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14398 1915..2005 +
1695995754.4026341-UTR-E-fasciculatus_F_contig14398:1914..20051695995754.4026341-UTR-E-fasciculatus_F_contig14398:1914..2005Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14398 1915..2005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927928.0887713-CDS-E-fasciculatus_F_contig14398:2005..23891622927928.0887713-CDS-E-fasciculatus_F_contig14398:2005..2389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14398 2006..2389 +
1695995754.4111211-CDS-E-fasciculatus_F_contig14398:2005..23891695995754.4111211-CDS-E-fasciculatus_F_contig14398:2005..2389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14398 2006..2389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14398.3197.1prot_E-fasciculatus_F_contig14398.3197.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14398 2006..2389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14398.3197.1

>prot_E-fasciculatus_F_contig14398.3197.1 ID=prot_E-fasciculatus_F_contig14398.3197.1|Name=mRNA_E-fasciculatus_F_contig14398.3197.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=128bp
MVSGEMDVHDEVFGKRARLWTGGLFFFSVQLTTKLAGERKGTHCVTQVVI
SISVVLSSSTPRMKYRKNQPVRGLQETSVRDSSPACSAGDCPMSLTPLPN
LCGVWSCLWSCCRDTPARQLYAGVNPPC
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mRNA from alignment at E-fasciculatus_F_contig14398:1915..2389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14398.3197.1 ID=mRNA_E-fasciculatus_F_contig14398.3197.1|Name=mRNA_E-fasciculatus_F_contig14398.3197.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=475bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14398:1915..2389+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTCCGCATACATGCGTATTGCGGTTTCGGGTATGCATGGATGTGTTATG
GTGTTGGATTTGGATTGGATGGGTAAGCTCTTCCCGGTTGCATGGTGTCT
GGGGAAATGGATGTACATGACGAAGTTTTTGGTAAAAGGGCTCGATTGTG
GACAGGCGGATTGTTCTTTTTTTCAGTACAGTTGACCACAAAATTGGCTG
GGGAAAGGAAAGGTACACATTGCGTGACCCAAGTAGTTATCTCCATTTCT
GTTGTACTGTCATCCTCTACCCCCCGGATGAAATACCGTAAGAACCAACC
CGTGAGAGGGCTTCAGGAAACAAGTGTGCGAGATTCGTCACCGGCTTGCA
GCGCCGGCGACTGTCCGATGTCCTTGACTCCACTACCAAACTTGTGTGGC
GTCTGGTCTTGTCTGTGGAGCTGCTGTCGCGATACACCTGCTCGCCAACT
GTACGCTGGAGTTAACCCGCCATGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14398:1915..2389+

>mRNA_E-fasciculatus_F_contig14398.3197.1 ID=mRNA_E-fasciculatus_F_contig14398.3197.1|Name=mRNA_E-fasciculatus_F_contig14398.3197.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14398:1915..2389+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTCTGGGGAAATGGATGTACATGACGAAGTTTTTGGTAAAAGGGC
TCGATTGTGGACAGGCGGATTGTTCTTTTTTTCAGTACAGTTGACCACAA
AATTGGCTGGGGAAAGGAAAGGTACACATTGCGTGACCCAAGTAGTTATC
TCCATTTCTGTTGTACTGTCATCCTCTACCCCCCGGATGAAATACCGTAA
GAACCAACCCGTGAGAGGGCTTCAGGAAACAAGTGTGCGAGATTCGTCAC
CGGCTTGCAGCGCCGGCGACTGTCCGATGTCCTTGACTCCACTACCAAAC
TTGTGTGGCGTCTGGTCTTGTCTGTGGAGCTGCTGTCGCGATACACCTGC
TCGCCAACTGTACGCTGGAGTTAACCCGCCATGCATGGTGTCTGGGGAAA
TGGATGTACATGACGAAGTTTTTGGTAAAAGGGCTCGATTGTGGACAGGC
GGATTGTTCTTTTTTTCAGTACAGTTGACCACAAAATTGGCTGGGGAAAG
GAAAGGTACACATTGCGTGACCCAAGTAGTTATCTCCATTTCTGTTGTAC
TGTCATCCTCTACCCCCCGGATGAAATACCGTAAGAACCAACCCGTGAGA
GGGCTTCAGGAAACAAGTGTGCGAGATTCGTCACCGGCTTGCAGCGCCGG
CGACTGTCCGATGTCCTTGACTCCACTACCAAACTTGTGTGGCGTCTGGT
CTTGTCTGTGGAGCTGCTGTCGCGATACACCTGCTCGCCAACTGTACGCT
GGAGTTAACCCGCCATGC
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