mRNA_E-fasciculatus_F_contig14392.3195.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI) HSP 1 Score: 378 bits (971), Expect = 2.840e-126 Identity = 196/203 (96.55%), Postives = 202/203 (99.51%), Query Frame = 1
Query: 1 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDDEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQLQRELDALKAEARAQEATWKTLERRKASRRIRTKQERLDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLSEYRLLVAEFGLLDAQLANLTKLVAELTGGETEYGVDGLVVDEDELEV 609
LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPD+EGGLAAGGSHGGGDKN KEIPEDSAVMLELRAIGEELEGRQEQL+RELDALKAEARAQEATWKTLERRKA+RRIR+KQE+LDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLSEYRLLVAEFGLLDAQLANLTKLVAELTGGETEYGVDGLVVDEDELE+
Sbjct: 233 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNIKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLSEYRLLVAEFGLLDAQLANLTKLVAELTGGETEYGVDGLVVDEDELEL 435
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE) HSP 1 Score: 365 bits (937), Expect = 4.790e-119 Identity = 192/203 (94.58%), Postives = 199/203 (98.03%), Query Frame = 1
Query: 1 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDDEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQLQRELDALKAEARAQEATWKTLERRKASRRIRTKQERLDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLSEYRLLVAEFGLLDAQLANLTKLVAELTGGETEYGVDGLVVDEDELEV 609
LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPD++GGLAAGGSHGGG KNTKEIPEDSAVMLELRAIGEELEGRQEQLQRELDALKAEARAQEATWKTLERRKA RRIR+KQE+LDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLSEYRLLVAEF LLDAQLANLTKLVAEL+GGE EYGVDGLV+DEDELE+
Sbjct: 417 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEQGGLAAGGSHGGGHKNTKEIPEDSAVMLELRAIGEELEGRQEQLQRELDALKAEARAQEATWKTLERRKAIRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLSEYRLLVAEFVLLDAQLANLTKLVAELSGGE-EYGVDGLVIDEDELEL 618
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Match: A0A7S1NU99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NU99_9EUGL) HSP 1 Score: 105 bits (263), Expect = 8.730e-23 Identity = 77/214 (35.98%), Postives = 122/214 (57.01%), Query Frame = 1
Query: 1 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDDEGGLAAGGSHGGGDKNTKEIPED------SAVMLELRAIGEELEGRQEQLQRELDALKAEARAQEATWKTLERRK-ASRRIRTKQERLDNATKQLQ----LHNIDVDMERICYNIEQEIRESTPSSLSEYRLLVAEFGLLDAQLANLTKLVAELTGGETEYGVDGLVVDEDELEV 609
LFVRDDGTVDWDGA++SG+E+A FGQE+WDR+NG+ D + +PE+ ++L+ +A ELE +++L+ A A+ Q W+ + S R + + L + +L+ L +D+DMERIC +EQEI +ST SL + ++LVAEFGLL+ QL ++ ++ + G+ E+ +D ++E ELE+
Sbjct: 403 LFVRDDGTVDWDGAMESGKELAVFGQEVWDRLNGRTED----------------GYRSLPENLFASDTDPLILKTKA---ELEALEQELETTTQARNAK---QAVLWEARTTGEPVSNEARVELKALAQSVLELRRRVALQRLDLDMERICLYLEQEIEQST--SLRDQKMLVAEFGLLEKQLQSILAILRKF--GDNEFIMDD--IEESELEL 588
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA) HSP 1 Score: 103 bits (257), Expect = 5.490e-22 Identity = 81/218 (37.16%), Postives = 117/218 (53.67%), Query Frame = 1
Query: 1 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDDEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQLQRELDALKAEARAQEATW-KTLERRKASRR------------IRTKQERLDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLSEYRLLVAEFGLLDAQLANLTKLVAELTGGETEYGVDGLVVD--EDELEV 609
+FVR+DGTVDWDGA QSG+E+A++ E+ +R+ G++P +E A +T DS+ ++L LQR L L++E RA E K LE KA R+ +R +++ ++++L +D+DMER C IEQEI +ST S+ E +LLVAEFGLLDAQL+ L + L E ++D EDEL V
Sbjct: 379 VFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKSPGEEAPPAKA--------STSLATIDSSPGMQL-------------LQRYLQELESELRAAEDERDKILELHKALRKQNLDVSKAQKGELRIAEDQAVEMKRRVELQRLDMDMERACAYIEQEIEQST--SIREQKLLVAEFGLLDAQLSTLLTM---LQAAEPNLDASSCLMDLDEDELRV 570
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Match: K0RSL1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RSL1_THAOC) HSP 1 Score: 81.6 bits (200), Expect = 1.930e-14 Identity = 71/236 (30.08%), Postives = 117/236 (49.58%), Query Frame = 1
Query: 1 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPD---DEGGLAAGGS-HGGGDKNTKEIPEDSAVML---ELRAIGEELEGRQEQ----LQRELDALKAEARAQEATWKTLERRKASRRIRTKQERLDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLS--EYRLLVAEFGLLDAQLAN---------------LTKLVAELTGGETEYGVD----GLVVDEDELEVW 612
L+VRDDGT+DWDGA+Q + +FG +W RING++P+ D+GG+++ H G T +IPE A+ +L + +EL + + L L A +A A AT + R K IRT ++LD ++ ++ ++ERI +E E+ + + RL VAE GLL++Q+ + L+ L +L + G+D GL D + +++W
Sbjct: 277 LYVRDDGTIDWDGALQDREALKKFGSAVWSRINGRDPEEGGDDGGVSSADEFHSSGKAVTAKIPETVAIREKKDQLDRLKKELNEMETEHTKLLNSALSAGQAVANVNFATIDPILRVK----IRTSLDQLDKKRAEVSFQMLNYELERIYTYLEGELGNTAAKGYIPLQDRLNVAELGLLESQVESFNRQIELGESLDDDMLSVLSDQLVDFKRRLGIDYYVQGLTFDTEAIKLW 508
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Match: A0A835YNT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT1_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.650e-14 Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query: 1 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDDE 120
LFVRDDGTVDWDGAIQSGREVARFG+ELW+RINGQ+P +E
Sbjct: 193 LFVRDDGTVDWDGAIQSGREVARFGKELWERINGQDPVEE 232
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Match: A0A7S1GKE2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GKE2_CYCTE) HSP 1 Score: 74.7 bits (182), Expect = 4.640e-12 Identity = 70/222 (31.53%), Postives = 113/222 (50.90%), Query Frame = 1
Query: 1 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNP---DDEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQ-EQLQRELDALKAEARAQEATWKTLERRKASRRIRTKQERLDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLSEYRLLVAEFGLLDAQL---------ANLTKLVAE-LTGGETEYGVD----GLVVDEDELEVW 612
L+VRDDGTVDWDGA+Q + FG +W RINGQ+P +D A + + T+EI E A + L A +E + L L+A +A A + AT + RIR ++ L +++ L ++ ++ERI +E E+ + + RL VAEFGLL++QL A++ ++V++ +T + G+D GL D + ++ W
Sbjct: 155 LYVRDDGTVDWDGALQDRAALQNFGAAVWARINGQDPSTLEDTSQSIAKTTVVAKIEETEEIRELKAQVDLLEAELSTMETKHLALLNSALNAGQAVANIRMATLDP----ELRNRIRLSEDELQAKKQEVSLVSLQYELERIFTYLEGEMNNNKGYIPLQDRLSVAEFGLLESQLLALSTQDKDADVLQVVSDQVTDLKRRLGIDYYVQGLTYDREAIQRW 372
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Match: A0A7S2PKJ6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PKJ6_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 9.320e-12 Identity = 69/237 (29.11%), Postives = 114/237 (48.10%), Query Frame = 1
Query: 1 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDD---EGG--LAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQLQR-ELDALK----AEARAQEATWKTLERRKASRR--IRTKQERLDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLS--EYRLLVAEFGLLDAQLANLTK---------------LVAELTGGETEYGVD----GLVVDEDELEVW 612
L+VRDDGT+DWDGA+Q + +FG +W RINGQ+P++ EG ++ G +K ED+ + + R ++LE + +LQR E++ K A + Q L S R IR + LD ++ H ++ +ERI ++ E+ + + RL VAEFGLL++Q+ + + + +LT + G+D GL D + ++VW
Sbjct: 318 LYVRDDGTIDWDGALQDREALKKFGSAVWSRINGQDPENNAMEGQDLMSPGDEFHAQNKVVTAKIEDTDAIRKKR---DQLEREKRELQRLEIEHTKLLNSAISAGQAVANVNLATINPSLRLQIRASSDELDAKAGEVTFHTLNYGLERIYTYLDAELGNTATKGYIPLQDRLNVAEFGLLESQVESFNRQMEIGESLDSDVLAVVADQLTDFKRRLGIDYYVTGLTFDSEAIQVW 551
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Match: A0A7S4EG82_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG82_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 2.330e-11 Identity = 69/200 (34.50%), Postives = 101/200 (50.50%), Query Frame = 1
Query: 1 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDDEGG-------LAAGGSHGGGDKNTKEIPEDSAVMLELRAIGE---ELEGRQEQLQRE-----------LDALKAEARAQEATWKTLERRKASRRIRTKQERLDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLS--EYRLLVAEFGLLDAQLANLTK 531
L+VRDDGTVDW+GA+Q + +FG +W RINGQ PDD G G GGG ++K P +A +++ AI E EL QEQL+ + L A +A A + A+ + R K IR E L +Q+ N+ ++ERI + E+ T + RL VAE+GLL++Q+ + +K
Sbjct: 315 LYVRDDGTVDWEGALQDRAALRKFGGAVWARINGQTPDDLGEEDDXETTSKEDGDIGGGSDHSK--PVVTAKIIDTPAIQEAHKELVVLQEQLKEKEKAHTALVQSGLKAGQAVANVKLASLDPVLRSK----IRLSAEALIILEQQVSHQNLVYELERIYTYLVTELENPTTKGYIPLQDRLNVAEYGLLESQIESCSK 508
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Match: B8C2L4_THAPS (LETM1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2L4_THAPS) HSP 1 Score: 72.8 bits (177), Expect = 2.540e-11 Identity = 60/195 (30.77%), Postives = 95/195 (48.72%), Query Frame = 1
Query: 1 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPD-------DEGGLAAGGS--HGGGDKNTKEIPEDSAVMLELRAIGE------ELEGRQEQLQRE-LDALKAEARAQEATWKTLERRKASRRIRTKQERLDNATKQLQLHNIDVDMERICYNIEQEIRESTPSSLS--EYRLLVAEFGLLDAQLANLTK 531
L+VR+DGT+DWDGA+Q + +FG +W RINGQ+P+ +EGG G H T +I E A+ + + + E+E QL + A + A AT + R K IR E L+ ++ ++ ++ERI +E E+ + + RL VAEFGLL++Q+ + T+
Sbjct: 301 LYVREDGTIDWDGALQDREALKKFGSAVWSRINGQDPETSGDASEEEGGALTAGDDFHSPSKAVTAKIVETDAIREKKKNLSSLTQQLREMEVEHTQLLNSAISAGQVVANVNLATVNSSLRMK----IRVSSEELEKMKGEVTFQTLNYELERIFTYLEGELGNTATKGYIPLQDRLNVAEFGLLESQIESFTR 491 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14392.3195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14392.3195.1 >prot_E-fasciculatus_F_contig14392.3195.1 ID=prot_E-fasciculatus_F_contig14392.3195.1|Name=mRNA_E-fasciculatus_F_contig14392.3195.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=212bp LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDDEGGLAAGGSHGback to top mRNA from alignment at E-fasciculatus_F_contig14392:464..2537- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14392.3195.1 ID=mRNA_E-fasciculatus_F_contig14392.3195.1|Name=mRNA_E-fasciculatus_F_contig14392.3195.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2074bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14392:464..2537- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14392:464..2537- >mRNA_E-fasciculatus_F_contig14392.3195.1 ID=mRNA_E-fasciculatus_F_contig14392.3195.1|Name=mRNA_E-fasciculatus_F_contig14392.3195.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1272bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14392:464..2537- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |