mRNA_E-fasciculatus_F_contig14391.3194.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14391.3194.1
Unique NamemRNA_E-fasciculatus_F_contig14391.3194.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Match: A0A6H5KPS4_9PHAE (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPS4_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.210e-44
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 IDVNGLHSSPMFAWLKAASGNPHDIPWNFTKFLVLCDSTVKRYSHEVNPMRMDDMISNAQSYCGAGDDENGGSTGEL 231
            IDVNGLHSSP+FAWLKAASGNPHDIPWNFTKFLVLC STVKRYSHEVNPM+MDDMI+NA+S+CGA DDE GG TGEL
Sbjct:  117 IDVNGLHSSPIFAWLKAASGNPHDIPWNFTKFLVLCGSTVKRYSHEVNPMQMDDMITNARSFCGASDDEAGGGTGEL 193
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BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Match: D8LS13_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS13_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.680e-17
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 IDVNGLHSSPMFAWLKAASGNPHDIPWNFTKFLVLCDSTVKRYSHEVNPMRMDDMISNAQSYCGAGD 201
            ++VNGL S P+FAWLKAASG P +I WNFTKFLV+  + V RYSHEVNP +++  I +A S    GD
Sbjct:  102 VEVNGLRSQPLFAWLKAASGVPGNIEWNFTKFLVVGGNHVTRYSHEVNPSQIEQDIISAPSAGYEGD 168
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BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Match: A0A835XQX9_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XQX9_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 8.790e-9
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 IDVNGLHSSPMFAWLKAASGNPHDIPWNFTKFLVLCDSTVK-RYSHEVNPMRMDDMI 168
            IDVNG   SP++A+LK+ASG+  DI WNF KFLV  D TV  RY+    P+ +D  I
Sbjct:   39 IDVNGGGMSPVYAYLKSASGDTSDIGWNFGKFLVRPDGTVAGRYAPTTGPLSIDKDI 95
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BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Match: A0A2J8A427_9CHLO (Glutathione peroxidase n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A427_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.700e-8
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 IDVNGLHSSPMFAWLKAASGNPHDIPWNFTKFLVLCDSTV-KRYSHEVNPMRMDDMI 168
            +DVNG + SP++ +LK ASG+  DI WNF KFLV  D TV  RY+   +P+ +D  +
Sbjct:   51 VDVNGPNMSPVYQYLKVASGDTSDIGWNFGKFLVRPDGTVFGRYAPTTSPLGLDKFV 107
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BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Match: A0A150GUP0_GONPE (Glutathione peroxidase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GUP0_GONPE)

HSP 1 Score: 57.0 bits (136), Expect = 2.070e-8
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 IDVNGLHSSPMFAWLKAASGNPHDIPWNFTKFLVLCDSTV-KRYSHEVNPMRMDDMI 168
            IDVNG ++SP++ +LK ASG+  DI WNF KFLV  D TV  RY+   +P+ ++  +
Sbjct:   78 IDVNGANASPVYQYLKVASGDTSDIGWNFGKFLVRPDGTVFGRYAPTTSPLALEKYV 134
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BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Match: A0A5J4XSU9_9CHLO (Glutathione peroxidase (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XSU9_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 1.910e-7
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 IDVNGLHSSPMFAWLKAASGNPHDIPWNFTKFLVLCDSTV 120
            IDVNG  +SP++ +LK ASG+   IPWNF KFLV  D TV
Sbjct:   52 IDVNGSEASPVYTYLKEASGDASPIPWNFAKFLVKKDGTV 91
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BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Match: A0A3N3ZQW4_9MICC (Glutathione peroxidase n=1 Tax=Kocuria soli TaxID=2485125 RepID=A0A3N3ZQW4_9MICC)

HSP 1 Score: 50.8 bits (120), Expect = 6.330e-6
Identity = 25/52 (48.08%), Postives = 30/52 (57.69%), Query Frame = 1 
Query:    1 IDVNGLHSSPMFAWLKAASGNPH--DIPWNFTKFLV-LCDSTVKRYSHEVNP 147
            +DVNGLH+ P++ WLK     P+  DI WNFTKFLV      V RY     P
Sbjct:   96 VDVNGLHTHPLWEWLKTQKQGPNGADIEWNFTKFLVDQSGQVVARYEPATEP 147
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BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Match: A0A5J5KWD9_9MICC (Glutathione peroxidase n=1 Tax=Kocuria coralli TaxID=1461025 RepID=A0A5J5KWD9_9MICC)

HSP 1 Score: 50.4 bits (119), Expect = 8.870e-6
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 IDVNGLHSSPMFAWLKAASG--NPHDIPWNFTKFLVLCDSTV 120
            +DVNGLH+ P++AWLK+     N  DI WNFTKFLV    TV
Sbjct:   96 VDVNGLHTHPLWAWLKSEKPGENGADIEWNFTKFLVDKSGTV 137
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BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Match: A0A7Y4XMV4_9BACT (Glutathione peroxidase n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4XMV4_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 2.570e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 IDVNGLHSSPMFAWLKAASGNPHDIPWNFTKFLVLCDSTVKRYSHEVNPM 150
            + V G   +P+FAWLK  +G   +  WNF K+L+  D +VK Y   VNPM
Sbjct:  109 VSVKGDDQAPLFAWLKEKTGQ--EPSWNFCKYLIKADGSVKFYKSAVNPM 156
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BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Match: A0A0R1QWE7_9LACO (Glutathione peroxidase n=2 Tax=Levilactobacillus spicheri TaxID=216463 RepID=A0A0R1QWE7_9LACO)

HSP 1 Score: 48.9 bits (115), Expect = 3.280e-5
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 IDVNGLHSSPMFAWLKAASGNPHDIPWNFTKFLVLCDSTVK-RYSHEVNPMRMDDMI 168
            + VNG  + P+F +LKAA+G+   I WNFTKFL+  D TV+ R++    P   +D I
Sbjct:   96 VRVNGADADPLFTYLKAAAGHGR-IKWNFTKFLIGRDGTVRHRFAPTTRPESFEDAI 151
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14391.3194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KPS4_9PHAE2.210e-4488.31Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
D8LS13_ECTSI2.680e-1758.21Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835XQX9_9CHLO8.790e-952.63Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A2J8A427_9CHLO1.700e-847.37Glutathione peroxidase n=1 Tax=Tetrabaena socialis... [more]
A0A150GUP0_GONPE2.070e-847.37Glutathione peroxidase n=1 Tax=Gonium pectorale Ta... [more]
A0A5J4XSU9_9CHLO1.910e-760.00Glutathione peroxidase (Fragment) n=1 Tax=Trebouxi... [more]
A0A3N3ZQW4_9MICC6.330e-648.08Glutathione peroxidase n=1 Tax=Kocuria soli TaxID=... [more]
A0A5J5KWD9_9MICC8.870e-657.14Glutathione peroxidase n=1 Tax=Kocuria coralli Tax... [more]
A0A7Y4XMV4_9BACT2.570e-544.00Glutathione peroxidase n=1 Tax=Cyclobacteriaceae b... [more]
A0A0R1QWE7_9LACO3.280e-543.86Glutathione peroxidase n=2 Tax=Levilactobacillus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14391contigE-fasciculatus_F_contig14391:2329..3236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue8.6e-09
Seed eggNOG ortholog2880.D8LS13
KEGG rclassRC00011,RC00982
KEGG koko:K00432,ko:K05361
KEGG ReactionR00274,R03167,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04216,ko04918,map00480,map00590,map04216,map04918
EggNOG free text desc.glutathione peroxidase activity
EggNOG OGsCOG0386@1,KOG1651@2759
EC1.11.1.12,1.11.1.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlutathione peroxidase
Ec32 orthologEc-14_004400.1
Exons2
Model size234
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14391.3194.1prot_E-fasciculatus_F_contig14391.3194.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14391 2329..3206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927927.7666416-CDS-E-fasciculatus_F_contig14391:2328..24241622927927.7666416-CDS-E-fasciculatus_F_contig14391:2328..2424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14391 2329..2424 -
1695995754.275942-CDS-E-fasciculatus_F_contig14391:2328..24241695995754.275942-CDS-E-fasciculatus_F_contig14391:2328..2424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14391 2329..2424 -
1622927927.7826543-CDS-E-fasciculatus_F_contig14391:3098..32061622927927.7826543-CDS-E-fasciculatus_F_contig14391:3098..3206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14391 3099..3206 -
1695995754.289021-CDS-E-fasciculatus_F_contig14391:3098..32061695995754.289021-CDS-E-fasciculatus_F_contig14391:3098..3206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14391 3099..3206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927927.7995477-UTR-E-fasciculatus_F_contig14391:3206..32361622927927.7995477-UTR-E-fasciculatus_F_contig14391:3206..3236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14391 3207..3236 -
1695995754.2976632-UTR-E-fasciculatus_F_contig14391:3206..32361695995754.2976632-UTR-E-fasciculatus_F_contig14391:3206..3236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14391 3207..3236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14391.3194.1

>prot_E-fasciculatus_F_contig14391.3194.1 ID=prot_E-fasciculatus_F_contig14391.3194.1|Name=mRNA_E-fasciculatus_F_contig14391.3194.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=68bp
MFAWLKAASGNPHDIPWNFTKFLVLCDSTVKRYSHEVNPMRMDDMISNAQ
SYCGAGDDENGGSTGEL*
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mRNA from alignment at E-fasciculatus_F_contig14391:2329..3236-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14391.3194.1 ID=mRNA_E-fasciculatus_F_contig14391.3194.1|Name=mRNA_E-fasciculatus_F_contig14391.3194.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=908bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14391:2329..3236- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTGACGTTAATGGGCTGCACTCCTCCCCGATGTTCGCTTGGCTCAAGGC
CGCCTCCGGCAACCCCCACGACATCCCATGGAACTTCACCAAGTTCCTCG
TCCTGTGCGACTCTACCGTCAAGCGATACTCGCACGAGGTGGGTACATGA
CACTTTTTTTGGCGTAAAAAAACTGTACTTTTCGGTTGTTTCGTGGCTGC
TTGCTGCTGCTGTACACCGCAATCCCGCGCGCCTCCTCCCCTCCACGCTT
GGCACCAAGAAGTATGGTTCGCAAGCAATAGTCTCCCATCGAGGCTGTGT
TCTGAACTCAAGGGAGTAACTAACGCTGGTTGTTTTGGTGTTGCCACCGG
TGGGGTTCTGTCAGCGGGCAGGGTACAGGCGATGTGATCGATGGTGATCG
TGCTTTGGTTCTCTCTCACTAGCGCCCGCATGCGTTACTGTAGCTTTGCC
GTGCCGTGAACGGCGGGAAGGAAGGCTTTTGCCTTTGCACGCGCATCACA
CTGATGCTGGTATGTATGTGTACCCGCGGTGCAGTGAGTGGGGTACGCAA
GGCTACCCGGCGGGGGTTGGTCGTGATGAACGTGTCCGCGCAGGCACTTT
GGTGTGGCACAGAATGACCCCCAGGCTTCGGGGTGACGTCATGCCGCCTT
TTCCCCCTCGAACCCCAGATCAGATCCCGCCCTACTCAAGGATGAGTCTA
TCCTCATCCTCCCCCCTTTACCCGTACGGTTTTCGACAGCGAGCGTGCTG
AGCGTGTTTCGACGCATGATGTTGCGATGATTTATTGTTTTCCCCTTTTT
TTGTGTCGTTAGGTCAACCCCATGCGCATGGACGACATGATCAGCAACGC
TCAGAGCTATTGCGGCGCTGGTGATGACGAGAACGGTGGCAGCACGGGGG
AGCTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14391:2329..3236-

>mRNA_E-fasciculatus_F_contig14391.3194.1 ID=mRNA_E-fasciculatus_F_contig14391.3194.1|Name=mRNA_E-fasciculatus_F_contig14391.3194.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14391:2329..3236- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGCTTGGCTCAAGGCCGCCTCCGGCAACCCCCACGACATCCCATG
GAACTTCACCAAGTTCCTCGTCCTGTGCGACTCTACCGTCAAGCGATACT
CGCACGAGATGTTCGCTTGGCTCAAGGCCGCCTCCGGCAACCCCCACGAC
ATCCCATGGAACTTCACCAAGTTCCTCGTCCTGTGCGACTCTACCGTCAA
GCGATACTCGCACGAGGTCAACCCCATGCGCATGGACGACATGATCAGCA
ACGCTCAGAGCTATTGCGGCGCTGGTGATGACGAGAACGGTGGCAGCACG
GGGGAGCTGTAGGTCAACCCCATGCGCATGGACGACATGATCAGCAACGC
TCAGAGCTATTGCGGCGCTGGTGATGACGAGAACGGTGGCAGCACGGGGG
AGCTGTAG
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