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Homology
BLAST of mRNA_E-fasciculatus_F_contig1439.3193.1 vs. uniprot
Match: D8LKM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKM9_ECTSI) HSP 1 Score: 446 bits (1148), Expect = 3.630e-155 Identity = 246/263 (93.54%), Postives = 250/263 (95.06%), Query Frame = 1
Query: 1 MVPRLFAACLALVLSYAAGFVSPAPRASFPSTTRATSGIMAVDLLPGGASGGEITTAIPEASSLLLQRVGLADVVDVHANL---GAAAADGGEGVGSLVSPLLLASAAPGNPSTASGLFGIAALVIALGAGVLVASTVTGKNGLAAFLTQEKGSNPFYQDTMAKFTPKTPDILNKIRLPDLDFVDVYNQPPAPDDYVDLEQDATFDAMANKGAPDADTVATAEALRQKLLMAVQAKDYDLASSLERELATFLRKNGMGFEGDQ 780
MVPRLFAACLALV+SYAAGFVSPAPRASFPSTTRA GI AVDLLPGGASGGEI TAIP+ASSLLLQRVGLADV VHA++ AAAADGGEGVGSLVS LLLASAAPGNPSTASGLFGIAALVIALGAGVLVASTVTGKNGL AFLTQEKGSNPFYQDTMAKFTPKTPDILNKIRLPDLDFVDVYNQPPAPDDYVDLEQD TFDAMANKGAPDADTVATAEALRQKLLMAVQAKDYDLASSLERELATFLRKNGMGFEGDQ
Sbjct: 1 MVPRLFAACLALVVSYAAGFVSPAPRASFPSTTRAR-GITAVDLLPGGASGGEIATAIPDASSLLLQRVGLADVGGVHADVVGPAAAAADGGEGVGSLVSSLLLASAAPGNPSTASGLFGIAALVIALGAGVLVASTVTGKNGLGAFLTQEKGSNPFYQDTMAKFTPKTPDILNKIRLPDLDFVDVYNQPPAPDDYVDLEQDVTFDAMANKGAPDADTVATAEALRQKLLMAVQAKDYDLASSLERELATFLRKNGMGFEGDQ 262
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-16_003600.1 |
| Exons | 6 |
| Model size | 1175 |
| Cds size | 783 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927927.7188785-UTR-E-fasciculatus_F_contig1439:17690..18082 | 1622927927.7188785-UTR-E-fasciculatus_F_contig1439:17690..18082 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1439 17691..18082 + |
| 1695995754.2647078-UTR-E-fasciculatus_F_contig1439:17690..18082 | 1695995754.2647078-UTR-E-fasciculatus_F_contig1439:17690..18082 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1439 17691..18082 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1439.3193.1 >prot_E-fasciculatus_F_contig1439.3193.1 ID=prot_E-fasciculatus_F_contig1439.3193.1|Name=mRNA_E-fasciculatus_F_contig1439.3193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=261bp
MVPRLFAACLALVLSYAAGFVSPAPRASFPSTTRATSGIMAVDLLPGGAS
GGEITTAIPEASSLLLQRVGLADVVDVHANLGAAAADGGEGVGSLVSPLL
LASAAPGNPSTASGLFGIAALVIALGAGVLVASTVTGKNGLAAFLTQEKG
SNPFYQDTMAKFTPKTPDILNKIRLPDLDFVDVYNQPPAPDDYVDLEQDA
TFDAMANKGAPDADTVATAEALRQKLLMAVQAKDYDLASSLERELATFLR
KNGMGFEGDQ* back to topmRNA from alignment at E-fasciculatus_F_contig1439:11049..18082+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1439.3193.1 ID=mRNA_E-fasciculatus_F_contig1439.3193.1|Name=mRNA_E-fasciculatus_F_contig1439.3193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7034bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1439:11049..18082+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGCCAAGACTCTTCGCAGCTTGCCTAGCACTGGTGCTGTCGTATGC
CGCGGGCTTCGTATCCCCTGCGCCTCGCGCATCCTTCCCCTCGACAACAC
GAGCTACATGTAGAGGTGCGTGCTCGAGATGATAGCAGCGCAACTGAAAA
ATAGACAGCAGGCAGGCCAGCGTGGTGTGTGCATGATACCGTCAGGCCCG
AGGTGGCTCGGTCTACCGCCGCGGAAGCCTCCCGCTTCTCTCTCGTGTGT
GCTATAGTCGGCAGTACCATTCCGCGCTTCGGAAAGGTATGATACTACGT
TATAGCTCTGTAGGCTGGAGCACTGCAACGTGCACAATGCCACGGGGTCA
AGAGGAGCCCGGCGGGCGGGTCAATCAGCAGCGCCCCTTCCCGCCCATTT
GCAAGCCATGCGAGTAGCAGTTGTCCTCCAGAGAGCCAACACCCTACGCA
TTACTACAAGGCATGGGCCAATAGGCAGCGGGTGAATTTCAACGCGTTGT
TGGCTCCCGAAATGCAAGTTACACCATTAGTGTAGTACTGTGTTCGTGTG
TGTTACCGTCCCAACTCAACCGGCAACCCACCGCCGCCGCCGCCGCTGCC
TCCTCTCGGCACGAGCAGCAGGCATCATGGCCGTCGATCTCCTTCCAGGC
GGTGCCAGCGGGGGAGAGATCACCACAGCGATACCCGAGGCGTCTTCTCT
ACTGCTACAACGAGTAGGCCTCGCGGACGTTGTCGACGTACACGCGAACC
TTGGCGCTGCTGCTGCTGACGGCGGCGAGGGCGTGGGGTCGTTAGTCTCG
CCTCTGCTGCTGGCTTCGGCGGCACCGGGCAACCCTTCCACGGCGTCGGG
GCTGTTCGGGATCGCCGCTCTCGTGATCGCGTTGGGAGCCGGGTGAGGCG
GGATTCTCTTTCGGTCGGTTGTTTTCGCCTGTTGATGCTTCCCAAAAGGC
GGTTGGAAACAAACTGCTACACCTAAGCTATGCACCCATGGTACTGTATT
TCGTTATGCTTACCGTCCGCAGTACAGGCAGTGCTTGCTGCTGCTGTTGT
GAGGCACTCCCAGGGGAGTGGTTCGCATTGCAAGTGCCACACTGCAGAAG
GCCCTCGACTTTTCGTTCCCTCACGATGAGGAAATCAGACTGGACTTGAG
TTGTTGGTTCTTCTTCTTTCGGCAGTACATCGGCTGTGACGCTTACCTCC
ACTGCAGTCCTGCACATGTGCCCACTCGCTGACATCATCGCTCACTCCAC
CCCAACCCGGCAGGGTCTTGGTAGCCTCGACCGTCACTGGGAAGAACGGC
TTGGCCGCGTTCCTTACCCAGGAGAAGGGCAGCAACCCGTTTTACCAGGT
ACATACGTGTTCGACTGTTTTATTTGTTTTGTCCTCCGGCGGCCGGGTTA
TACATTCTATCGAATAGTCTACTTTTGAGATCGGACCCGTGCTTTGTCTG
TGTTCCTCCCCTCGGCAAAACACGATTACGATGTTCGCTGCGAAACACGA
AATCCCATACGTCCCACCAAGCACCCCCTGTGCCTCTATCCACATATACA
TACATTATAGACCTGTAGACGAACTCCACGCGGGTTGAGGGTGCACGAGG
TTGCAGGATTGGCAATCCTTATGCTCTTGTGGCTCCCGAGCCCATTTTTT
TGCGGTTTCTCCGCCCGTAGACCTCCGTTCGCCGCGAGATTCGCGCCTGC
CGGTAGCCCTGGGCCGCTAGGACCTTTCCCGTGTGCGGCTCGCTCCCGAA
GCGGTACGCCGCGAATCGCCCTTAAAAACATGAACACATATTTAAGACTT
ATTGCAGATTTGTATTTCCTTCCTAAGGAAGCGAAGAACTTCCCTTGGGC
TGCACAACAATGTACGTACGTGGTACGGAAACGTCTTTTGGCTGTCGGTT
TGAACAGTCCGGCAGAGAACGTCAGTGCCAAACACCAAAACCCATATGCA
TAGCACTGCTACTGCTGCTGCTGCTGTGATCAGCAGCCCGGCAGAAGACG
CCAGCTTCAACCACAAACATCAACGGGGACAACAACTGTTGTGATGTTGA
ACCGTGTGTCTGCACAATATGGCAGCTGATTGACTGCCGTGATCAGCACC
CCACGGAAGACTTCAGCTTAACCAAAAGCGCCAGCGGTGATACAGCTGTT
TCTGATTATTTGAACCTACAGTAGGTTGAACCGTCTGTCTGCACACAACA
TGCCAACAGCAGCTCTGACTGAGTGAGCCACGCAACAAAAACGCCAGAAA
AATAACAGTACACCGAGCAGAAATATGCAATTAGCGGTGCACCAGAGGTA
TAGAGTAAGATGCACACCATGCAGTCGCCGAGCCTCAGGCTCGGAAGTCG
GCGTGCGGCCAATTGATGCGGCACACATGATGCACGGTGGGACATGCGCG
GAAGCGGGCTTTCAACCAACAAAAATCCAGCAAATATGAGACCAACTCTT
TTTGTAATCAACCCAAGCTGAGAAAACAGCGATACGACACCACGGCTGGC
CGGTTCTCTACCACCTACGTAAGATCATCAGAACACTGGTGTGGTATTTA
GTTGTAGCGGATCTTAGGTGTGGAGGTGCAGACAAGGGTGAGAGCTCGAG
GTGCGAGGGTCGGATGCCCTCGACACCTCACTCAAGACATCATCTGCATG
AGATCATTTGCATGTATGCAATGGTTCGATCGGGTGTTCTTGCATAAAAA
ATTCCACATTCCAAGAAGGGTCTGTATCGACATCGACCGAAAATCTCGCG
CCGACCTCCTCCCAAAAATGGCGTCAACCCTTTCATGGTCGATATGCATG
TGTATCTATGCATATGCATACGAACATCATCTAATTCTCCGCTGTGCTTT
TCGCATGTTCCTGCATCACCCCCTGCCGCGGTGCGTTCTTTACCCCACTC
CGGAGCGATGGATGCCTTGTACTACGTGTACATACATTACATAAATGCAT
ACATACGTACGTACGTACATACATACATACATACATACATACATACATAC
ATACACGCATACAACATACATATGTATTGTATGTACCTGCGCAACCAGCT
GGAGGGAATAGTCAATGACTGTGTCCGACAGGTTGCGGTAGGCGGCGTCT
CGGTGATCGAGACTGCTGCCGCCGCCTACCGCAACCTGTCGGATACAGTT
CACTACTCCCTCCAAGCGGAGCCAGCCCTCTATACCTTGGCCGCACTTCC
AACGGCTCCAGCAGTGCACCACATGCACGTGGTGGCCGCGGGACTCGCAA
CTGGGCTTCCGACAGTTTTCGGGCACACCGGGAAGCGATGGCCGCCTTCC
TTACACTTCTTGCAGATCCAAAAGGCACATGTCAGATGCGAATGGTTCGG
ATTGCGGTTGTTCGACTGACATTTTCGACACAAGTCCCCCCCGGCACGCC
CGGGCTCGCCAACTGCTGCTGCTGGAGGGCGGAATTGCGCTGGTTGCGCA
GGTACATATATACATATGTGCATACAAGGTGGTCTGGCGGCGTCGCCGCC
TCGCTCAGTAGATCGATTCCAAGATACGCGATTAGCGGTATAACAATGTT
TTAGTGGAAAGAAATAAAAAAACGGCTTGCTTAGTGCAGAAAGAGCGAGA
GAGAGCGTACTCTGGCGGCTTTCGCCGCCCCGCTCAGTAGATCGCCAATA
TATATGCGATGAGCGTAGCAACCAACCATACCGGCTTCGTGCAGAAAGAG
AGAGAAAGAGGGCATCTTCTCTGGCGGCTTTCGCCGCCCCACTCAGAACT
GTTCATGTATATTTCCATTTCGTAAGAAACCCCGCCCCTCGCCCTCGCCT
GGGAAATTTCGAAGAGAAGCGTTCAGAAGAGAAGCGGAATTAAACCCCAA
CGAGACATACATATTGTCGCGCAGTTATGTGGGACACGCGAGAGGGGAGA
GAGAGACTGGTGTGTGATTGGGGAGACAGAGACTGGCATATGTGGATGGA
TGATGAGAGAAGCAGAGGGACGGGCAGCGAAAGATTCCCGCTTTAACCCG
TAGTAAACCGTAGACAACCCGTGCACAACGAGTCCATCGAGGTCTCACAC
AGCTGACTGACAAATTGAGAGGTGTGTCAATTGTCGGAACTAAGGAGAAA
CCCCGCCCCTCGCCCGGGAAATTCGCAAGAGAAGGGTTCCGAAGTGGAAT
GAAAGGAACATGAGGCGCCAAAGACCCAGGACAGATGGTGGTGCGCCACG
CGAGAGGGGAGAGAGAGACTGATGGTGTGTGATAGGGGAGACAGAGACTG
CCATAAAATGTGATGTGTGGATTGATGAGAGCAGCACAGGAACGGGACGG
GCAGCGAAAGATTCCCGATTTAACCCGTCCAGAAGAACGAGAACGGGTCC
ATGGACGTCTTGTCTGTGTGACAGCAGTGTCAAAGTTTGGAACTGAAACA
GGACGTTGTTTGTTGTGGATGTTGATTGTTGAAGAAAAGGTTGTGGATGT
TGACACATGTTGAACGACACAGCAGTAGAGAGCGACGTGCGAAAGCAGAC
TGGATGTGTGACAGCCGAGAGATGAAGATGAAGGCCACGCGTGAGAGACG
TGCGAAAGGGTGGACACGTTCCGCGCGACAGAGAGATGAACAAAAGCGGC
GAATTAGAAAAAGCGGGAAAATGAAATACTGGGAAAATGCACGCCTGTCA
GAGCTCTAAATAGTAGAAGCCAAATGCAGCGCTGTGAGAGCCTGAGAGAA
AATTCTGCTGATCGGAGAGCGGATGGATACAATGTAAAAAGGATACATAC
ATACATACATACATACATACATGCATGCATACATACATACATACATACAT
ACAACATACATACATACGTACATACATACCTACATACGTACGTACCTGCA
TACATATTATACACATGTGCTTCGTTACCATTCCATTTCGTTTCGTTTCG
TCAGGACACGATGGCCAAGTTCACCCCGAAGACGCCGGACATTCTCAACA
AGATCCGCTTGCCGGACTTGGATTTCGTGGACGTGTACAACCAGCCGCCA
GCGCCGGATGACTACGTAGACCTCGAACAGGACGCCACCTTCGACGCGGT
GAGAACAAACGACCAGGACCTACCCTACGAGAAGAAAAAAAGTATTCCCC
CAATTTTCTCATGGGTTGTGTGTGCGTGCAACGGTTTTTGATTGACTCTG
GCTCTTGGCTTTGTATCCCGGTACAATTGGGGACGCACGCGGGAAATGTG
AGTGTGTACGGCGGCTATTGCAAAATACCTCCATGGTGATCGATTGGTTT
GGCGGCAAGACAGGCGTTCTCAACCGAACGGGCAAGCTACCGGATGCTCT
CTCTTATCCCCAAATCGTTCTTGGAGCGGTTTTGTCGGCCATCCGTTGCT
GCGAGAGGTTTTTGCCGATCCTGGGAGCCGTGCCCTGGATGATTCGCACC
TCGTCTTGTCTGGAGAAATCGCTAAGGTTTTTGTCTGTGCGCCTGTCTGC
CTGTCTCTTTATCTTTCTGTCTCTTCATCTCTCTGTCTCTTTATCTCTCT
GTCTCTCTGTCTCTATATCTCCCGGTCTCTCTGTCTCTCTGCGTGTCGTG
TCTTCACCCGCACTTCGCGAACGGCATCGAAACAACAACAAAACACGGCA
ACGCCATAAAAAAACTGCGGTCACAATGATCACGGCGACCTACTCTACGA
TAGATGGCGAACAAGGGGGCACCAGACGCAGACACGGTCGCCACTGCGGA
GGCCTTGCGGCAAAAATTGCTCATGGCGGTGAGTGATCGATGCCTATCCA
TGCGGTGCAGAAAGTGAGGCTGCTGCTTTGTGAAGCTCTAGCGATATACC
CGGGTGCCACTGGCACGCAGAAACACGGATTTCACAGAAGTACCGATGCA
CGAAACGCCGCCGAAGAGCTAAACAAATGCCCCATCCTGTTTGTGGAAGG
AACGACGTTTGCTACCTGAAGAGAATGTAACGAAGATGGAAAGACAGCCG
ATACACAGATGCTTGGGGTTCCGAGGGGCAGAGGCACGGAACGAAACTTG
GAGGACCCTCCTCTTCCCTCGGCCGCGTGTCATCTTTCGTCTCGGTATCA
AGAAGCAGGGCTGTTCCCTTCCCTTCATCCCTGCCTTCTTCTTCTTCCCA
ATCCAGCCCGTTCCCTGTGCAGTTAAATGACTGAAGTGTTCACGCACGAA
GCGAAACACCACTGCCCCGGGCACGTACGTTTATTGACCCTCTTCCGTTC
TCTTCTTAAAGGAAGTCCATGACCCCCCGCCCCGGTCCTCTCGAGGACAT
GTGGTCAATGGTCGTCACAAGGCATGGAAAGACTTGAGTACCCCGATCTC
CGTCCTCTCGAGGACGCATGGTCAATAGTCTAACAACTAAGGCATGCGAA
ACATGAGCACCCCCCCGATCCTCCTCTTTGCTCGCTAGCGACCTGATCTA
ACAATCACTTCGAAGTAATATTAAGGCATGCAAACCGTAAGTACCCCCCC
CCCCCCGCCTGCGAGGTCTATGGTCTAACGACTACGGTATGCATGATACT
GAGTACACCCCCCCGCCCCTCTTTGCCTCGCTCGCTGCCGAGCAAGGTGC
AAGCGAAGGACTACGACCTAGCCTCGTCGCTGGAGAGGGAGCTCGCCACC
TTCTTGCGGAAGAACGGCATGGGGTTTGAGGGCGACCAGTAGGCCGGACG
CCCGTCGTCTCGGCATCAACCGGGCCGCACACACACATGACCCCCCCTCG
CGGGGTGCCAGATCATGGCTTTAGAAGCTTCAGCCGCGGTGAGACTGTCG
GCCGGTTCTGTGGCGCGCTCGATGCAAACACTAAAAACACACGCGCACGG
CAGTTCGTGGTGATTGGCTGGCTACCTCGATGGTATACCCAGGCCTGGCG
CTGCCTCTTATCCCGTCAGGTTGCACCTGGGGACTGGCTCAACACTGCGG
TGTTGAACTGAATAGGTGCATGGGTCAAGAGCGGCGGTGGCGGGGGCGAC
GCTGTATGCTTTTCGGAAGGGGTGGGGGTATTCTGAACCCTGCACGAGGC
TCGTGCAGTCAGTCAGTCTCCTTGATTTGGTGTG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1439:11049..18082+ >mRNA_E-fasciculatus_F_contig1439.3193.1 ID=mRNA_E-fasciculatus_F_contig1439.3193.1|Name=mRNA_E-fasciculatus_F_contig1439.3193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1566bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1439:11049..18082+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGCCAAGACTCTTCGCAGCTTGCCTAGCACTGGTGCTGTCGTATGC
CGCGGGCTTCGTATCCCCTGCGCCTCGCGCATCCTTCCCCTCGACAACAC
GAGCTACATATGGTGCCAAGACTCTTCGCAGCTTGCCTAGCACTGGTGCT
GTCGTATGCCGCGGGCTTCGTATCCCCTGCGCCTCGCGCATCCTTCCCCT
CGACAACACGAGCTACATCAGGCATCATGGCCGTCGATCTCCTTCCAGGC
GGTGCCAGCGGGGGAGAGATCACCACAGCGATACCCGAGGCGTCTTCTCT
ACTGCTACAACGAGTAGGCCTCGCGGACGTTGTCGACGTACACGCGAACC
TTGGCGCTGCTGCTGCTGACGGCGGCGAGGGCGTGGGGTCGTTAGTCTCG
CCTCTGCTGCTGGCTTCGGCGGCACCGGGCAACCCTTCCACGGCGTCGGG
GCTGTTCGGGATCGCCGCTCTCGTGATCGCGTTGGGAGCCGGCAGGCATC
ATGGCCGTCGATCTCCTTCCAGGCGGTGCCAGCGGGGGAGAGATCACCAC
AGCGATACCCGAGGCGTCTTCTCTACTGCTACAACGAGTAGGCCTCGCGG
ACGTTGTCGACGTACACGCGAACCTTGGCGCTGCTGCTGCTGACGGCGGC
GAGGGCGTGGGGTCGTTAGTCTCGCCTCTGCTGCTGGCTTCGGCGGCACC
GGGCAACCCTTCCACGGCGTCGGGGCTGTTCGGGATCGCCGCTCTCGTGA
TCGCGTTGGGAGCCGGGGTCTTGGTAGCCTCGACCGTCACTGGGAAGAAC
GGCTTGGCCGCGTTCCTTACCCAGGAGAAGGGCAGCAACCCGTTTTACCA
GGGTCTTGGTAGCCTCGACCGTCACTGGGAAGAACGGCTTGGCCGCGTTC
CTTACCCAGGAGAAGGGCAGCAACCCGTTTTACCAGGACACGATGGCCAA
GTTCACCCCGAAGACGCCGGACATTCTCAACAAGATCCGCTTGCCGGACT
TGGATTTCGTGGACGTGTACAACCAGCCGCCAGCGCCGGATGACTACGTA
GACCTCGAACAGGACGCCACCTTCGACGCGGACACGATGGCCAAGTTCAC
CCCGAAGACGCCGGACATTCTCAACAAGATCCGCTTGCCGGACTTGGATT
TCGTGGACGTGTACAACCAGCCGCCAGCGCCGGATGACTACGTAGACCTC
GAACAGGACGCCACCTTCGACGCGATGGCGAACAAGGGGGCACCAGACGC
AGACACGGTCGCCACTGCGGAGGCCTTGCGGCAAAAATTGCTCATGGCGA
TGGCGAACAAGGGGGCACCAGACGCAGACACGGTCGCCACTGCGGAGGCC
TTGCGGCAAAAATTGCTCATGGCGGTGCAAGCGAAGGACTACGACCTAGC
CTCGTCGCTGGAGAGGGAGCTCGCCACCTTCTTGCGGAAGAACGGCATGG
GGTTTGAGGGCGACCAGTAGGTGCAAGCGAAGGACTACGACCTAGCCTCG
TCGCTGGAGAGGGAGCTCGCCACCTTCTTGCGGAAGAACGGCATGGGGTT
TGAGGGCGACCAGTAG back to top
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